BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473395
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32130.1 | Symbols: IWS1, ATIWS1 | Transcription elongation ... 2889 0.0
> AT1G32130.1 | Symbols: IWS1, ATIWS1 | Transcription elongation
factor (TFIIS) family protein | chr1:11558881-11561865 REVERSE
LENGTH=1853
Length=1853
Score = 2889 bits (1564), Expect = 0.0
Identities = 1760/1852 (95%), Gaps = 24/1852 (1%)
Strand=Plus/Plus
Query 1 ACAACTCGAAGATCAAAGTATTCGTAAATTCTCTCTTTCGAATCATTTTCTGGAAGCTGA 60
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 14 ACAACTCGAAGATCAAAGAATTCGTAAATTATCTCTTTCGAATCATTTTCTGGAAGCTGA 73
Query 61 GAAGAAATGGGTTTCGAGGATGATCCGTACCGTGATGTAGATGGAGAGCCAATAGTGGAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 GAAGAAATGGGTTTCGAGGATGATCCGTACCGTGATGTAGATGGAGAGCCAATAGTGGAC 133
Query 121 TTTGATGACTTTGGAAATGATCGTGAGCAATCAACAGAGCCACTTCAGGATTTTGATGAA 180
|||||||| ||||| |||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 134 TTTGATGATTTTGGGAATGATCGCGAGCCATCTACAGAGCCACTTCAGGATTTTGATGAA 193
Query 181 GATTTGGCTGATGATATTGGAGATTGGGATGGTGAAGGGTCACAAACACCTGTTTATGAT 240
||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 194 GATCTGGCTGATGATATTGGAGATTGGGATGGTGAAGGATCACAAACGCCTGTTTATGAT 253
Query 241 AATGATAAAGTAGCTAAACCGAGGAAGAGGTTGGTGAAGAAAGCTTCTAGTGAACGTGAG 300
|||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
Sbjct 254 AATGATAAAGTAGCTAAACCAAGGAAGAGATTGGTGAAGAAATCTTCTAGTGAACGTGTG 313
Query 301 ACTATTGATGTTCCTGAATTGATTGATGAGGATGTGGAGGATGCTGAGTTTGATGAGTTT 360
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 314 ACTATTGATGTTCCGGAATTGATTGATGAGGATGTGGATGATGCTGAGTTTGATGAGTTT 373
Query 361 ATGGGAGGAAGAGGTGGTGGTGGTGGTACTGATTATGATGATAAGGTTGGTAGGAAGAGG 420
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 374 ATGGGAGGAAGA---GGTGGTGGTAGTACTGATTATGATGATAAGGTTGGTAGGAAGAGG 430
Query 421 AAGAAGGAGAAAGATCGAAGTAGTAGTGGTAGTGGGAAGGAGAAGAGGCATAAGTTCCCG 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 431 AAGAAGGAGAAAGAGAGAAGTAGTAGTGGTAGTGGGAAGGAGAAGAGGCATAAGTTTCCG 490
Query 481 AACCGTGGCGAGAGGAAGTCAGAAGAGATTGATGAGATGTGGAAATCTATTGCTCATAAC 540
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 AATCGTGGCGAAAGGAAGTCAGAAGAGATTGATGAGATGTGGAAATCTATTGCTCATAAC 550
Query 541 CCTGAGAATGATGAAGAAGGTGTTAGGACTATGGATGACGATAATTTCATTGACGATACT 600
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 551 CCAGAGAATGATGAAGAAGGTGTTAGGACTATGGATGATGATAATTTCATTGACGATACT 610
Query 601 GGTTTGGATCCTTCTGAGAGGTATGGAGGTGACGCTGGAGACCGCTCTCCAACTCATTAT 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 611 GGTTTGGATCCTTCTGAGAGGTATGGAGGTGACGCTGGAGACCGTTCTCCAACTCATTAT 670
Query 661 CCTCAGGCAGAGGAGGGTGAGGATGATGATGAGGTGAATAACCTTTTCaaaatggggaag 720
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 671 CCTCAGGCAGAAGAGGGTGAGGATGAAGATGAGGTAAATAACCTTTTCAAAATGGGGAAG 730
Query 721 aaaaagaaaaagactgaaagaaaTCCTGCGGAAATCGCTCTCTTGGTTGAGAATGTGATG 780
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 731 AAAAAGAAAAAGACTGAAAGAAATCCTGCGGAAATTGCGCTTTTGGTTGAGAATGTGATG 790
Query 781 GCTGAGCTTGAGGTTACTGCTGAGGAAGATGCAGAACTTAATAGACGGGGGAAGCCTGCT 840
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 791 GCTGAGCTTGAGGTTACTGCTGAGGAAGATGCAGAACTTAATAGACAGGGGAAGCCTGCT 850
Query 841 ATCAACAAGCTTAAGAAACTTTCGCTTCTTACCGATGTACTTGGAAAGAAGCAGCTTCAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 ATCAACAAGCTTAAGAAACTTTCGCTTCTTACCGATGTACTTGGAAAGAAGCAGCTTCAA 910
Query 901 ACAGAATTCCTGGACCATGGAGTTTTAACTCTGTTGAAGAATTGGCTTGAGCCTCTTCCA 960
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 911 ACAGAATTCCTGGACCATGGAGTTTTAACCCTGTTGAAGAATTGGCTTGAGCCTCTTCCA 970
Query 961 GATGGAAGCTTGCCAAATATCAACATCCGTGCAGCTATTCTAAGAGTTCTTACTGATTTT 1020
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 971 GATGGAAGCTTGCCAAATATAAACATCCGTGCAGCTATTCTAAGAGTTCTTACTGATTTT 1030
Query 1021 CCGATTGACTTGGACCAGTATGATAGAAGGGAGCAATTGAAAAAGAGTGGGCTTGGAAAG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 CCGATTGACTTGGACCAGTATGATAGAAGGGAGCAATTGAAAAAGAGTGGGCTTGGAAAG 1090
Query 1081 GTCATTATGTTCTTATCAAAGTCTGACGAGGAAACTAATTCCAACAGACGACTTGCTAAG 1140
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1091 GTCATTATGTTCTTATCAAAGTCCGACGAGGAAACTAATTCCAACAGACGACTTGCTAAG 1150
Query 1141 GATTTGGTTGATAAATGGTCTCGTCCAATTTTCAACAAGAGTACTAGGTTTGAGGACATG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 GATTTGGTTGATAAATGGTCTCGTCCAATTTTCAACAAGAGTACTAGGTTTGAGGACATG 1210
Query 1201 AGAAATCTCGATGAAGATAGGGTTCCCTATAGAAGGCCACCAGTGAAGAAACCTAGCAAC 1260
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1211 AGAAATCTCGATGAAGATAGGGTTCCCTATAGAAGACCACCAGTGAAGAAACCTAGCAAC 1270
Query 1261 AAAGCGACAATGGAGTCCAGAGATGGTGACTTTGACTTGGAGATTCGGGAACGTAAAACT 1320
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1271 AAAGCGACAATGGAGTCCAGAGATGGTGACTTTGACTTGGAAATTCGGGAACGTAAAACT 1330
Query 1321 GGTCTGACTTCTGGTCAGAGTTCAAGGGGAGACAGGCAAATGACGATGAGGCCGGAAGCA 1380
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 GGTCTGACTTCGGGTCAGAGTTCAAGGGGAGACAGGCAAATGACGATGAGGCCGGAAGCA 1390
Query 1381 ACCCCATTGGACTTTTTGATCCGTCCTCAATCCAAGATTGACCCGGATGAGATCAGAGCC 1440
||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 1391 ACCCCATTGGACTTTTTGATCCGTCCTCAATCCAAGATTGATCCAGATGAGATCATAGCC 1450
Query 1441 CGTGCAAAACAGGGCTCTCAGGACCAGCGTCGGGTCAAGATGAACAAGAAACTTCAGCAG 1500
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 CGTGCAAAACAGGTTTCTCAGGACCAGCGTCGGGTCAAGATGAACAAGAAACTTCAGCAG 1510
Query 1501 CTAAAAGGAACAAAGAAAAAGCGGCTGCAAGCCACGAAGGTGAGCGTGGAAGGTCGGGGT 1560
||||||||||||||||| |||||||| ||||| ||||| |||||||| ||||||||||||
Sbjct 1511 CTAAAAGGAACAAAGAAGAAGCGGCTACAAGCTACGAAAGTGAGCGTTGAAGGTCGGGGT 1570
Query 1561 ATGATCAAGTACCTGTAGAGAGTTTACAACCAAACCAGACCATCAAGCCACATTGGAACT 1620
|||||||||||||| ||||||| ||||||||| |||| |||||| | |||||||| || |
Sbjct 1571 ATGATCAAGTACCTCTAGAGAGGTTACAACCAGACCATACCATCCATCCACATTGAAATT 1630
Query 1621 GGTTC-TTCTATCGTGTTAATCTTCCAACTTTGCTTGGATCAGTGTTTAAAAAGGTCTTC 1679
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1631 GGTTCCTTCTATCGTGTTAATCTTCCAACTTTGCTTGGATCAGTGTTTAAA--GGTCTTT 1688
Query 1680 CAGGTGAAGTCAAAGACTTGATG-CATTGGGGTTTATACTTATATGTACTCTTCTATATA 1738
||||||||||| ||||||| | | |||||||||| |||| ||||||||||||||||||||
Sbjct 1689 CAGGTGAAGTCGAAGACTTAAAGGCATTGGGGTT-ATACGTATATGTACTCTTCTATATA 1747
Query 1739 TGGTTTGCTTTGAGCCTCTTTCTAATGTAATTGGAAAGTGAAAACA-TTACGTTCGTCAC 1797
|| |||||||||||||||| |||||||| |||| ||||||||| || |||||||||
Sbjct 1748 TGCTTTGCTTTGAGCCTCT----AATGTAATGGGAA-GTGAAAACACTTT-GTTCGTCAC 1801
Query 1798 TTACTT-CTTGAGAGCAGATACATTCTTCTATTATGGTAATCAATTTTCAGT 1848
|| ||| ||| |||||| | | || |||||| |||||||||||||||
Sbjct 1802 TT-CTTTCTTCAGAGCATAAA-AT------ATTATGATAATCAATTTTCAGT 1845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91465392990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5