BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473397
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32160.1 | Symbols: | Protein of unknown function (DUF760) ... 2113 0.0
> AT1G32160.1 | Symbols: | Protein of unknown function (DUF760)
| chr1:11568665-11570387 FORWARD LENGTH=1403
Length=1403
Score = 2113 bits (1144), Expect = 0.0
Identities = 1328/1414 (94%), Gaps = 24/1414 (2%)
Strand=Plus/Plus
Query 1 TTTTCGAAATATCAAAAGAGAAAGGaaaaaaaaaaaTGCAAGCCATCGGCAGCAGCCATG 60
||||||||||||| ||| || |||| || |||||||||||||||||| ||||||||||
Sbjct 8 TTTTCGAAATATC-AAA-AG-AAGG---AACAAAAATGCAAGCCATCGGTAGCAGCCATG 61
Query 61 GGAGGAGGCTGTGCTTCAACCATTAtctctccgattccttctccaagttcctctctcctt 120
| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 62 GCAGGAGGCTCTGCTTCAACCACTATCTCTCCGATTCCTTCTCCAAATTCCTCTCTCCTT 121
Query 121 cttcttctccttcccttctccctcAGAGATGCCATTCGTTTTGTATCCCCAAGCTTGGAA 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 122 CTTCTTCTCCTTCCCTTCTCCCTCAGAGATGCCATTCGTTCTGTATCCCCAAGCTTGGAA 181
Query 181 GTAGTAGTATCAATGAGAATGGCAGAGGAAGAATTGTGACAGTGAGAGCTTCAGGAGAAG 240
||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct 182 GTAGTAGTACCAATGAGAATGGCAGAGGAAGAAGTGTAACAGTGAGAGCTTCAGGAGATG 241
Query 241 AAGATTCTAATG-GCAACTTTGCTCCTCTTGCTCCTGTTGAGCTTGAATCTCCTGTAGGA 299
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AAGATTCTAATGAG-AACTTTGCTCCTCTTGCTCCTGTTGAGCTTGAATCTCCTGTAGGA 300
Query 300 CAGCTTTTGGAGCAGATTCTTAGAACTCATCCTCAT-TTGTTACCCGTTACTGTCGATGA 358
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 301 CAGCTTTTGGAGCAGATTCTTAGAACTCATCCTCATCTT-TTACCCGTTACTGTCGATGA 359
Query 359 GCAGCTCCAGAAATTCGCCGCAGAAAACGAGGCTCTTAAAGCCGATTCGTCTGCAACACA 418
||||||| ||||||||||||| |||| |||| ||| |||||| ||||||||| | |||||
Sbjct 360 GCAGCTCGAGAAATTCGCCGCGGAAAGCGAGTCTCGTAAAGCTGATTCGTCTTCCACACA 419
Query 419 AGACATTCTCCAAAAGAGGATATCTGAAGTTAGAGATAAGGAAAGACGTAAAACTTTAGC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGACATTCTCCAAAAGAGGATATCTGAAGTTAGAGATAAGGAAAGACGTAAAACTTTAGC 479
Query 479 GGAGATCATTTACTGTTTAGTGGTACAAAGGTTTGTGGAGAAAGGAATCTCTATGATTCC 538
|||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 480 AGAGATCATTTACTGTTTAGTGGTACACAGATTTGTGGAAAAAGGAATCTCTATGATTCC 539
Query 539 TCAGATTAAACCAACTTCAGACCCAGCGGGACGGATAGACTTATGGCCGAACCAAGAAGA 598
|| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 540 TCGGATTAAACCAACTTCAGACCCAGCAGGACGGATAGACTTATGGCCGAATCAAGAAGA 599
Query 599 GAAGCTCGAAGTCATTCACTCTGCGGATGCTTTCGAGATGATACAGAGTCACTTGTCTTC 658
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 GAAGCTCGAAGTCATTCACTCTGCGGATGCGTTCGAGATGATACAGAGTCACTTGTCTTC 659
Query 659 AGTTCTTGGAGACCGAACAGCGGTTGGTCCTTTAAGCTCTATAGTTCAGATAGGCAAAAT 718
||||||||||||| || |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 660 AGTTCTTGGAGACGGACCAGCAGTTGGTCCGTTAAGCTCTATAGTTCAGATAGGCAAAAT 719
Query 719 CAAACTCGGAAAACTCTACGCTGCTTCAGCCATGTATGGCTATTTTCTTAGAAGAGTAGA 778
||| || ||||||||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct 720 CAAGCTAGGAAAACTCTATGCTGCTTCTGCTATGTATGGATATTTTCTCAGAAGAGTAGA 779
Query 779 CCAAAGATACCAACTTGAGAGAACCATGAACACACTTCCGAAACGGCCTGAGCAAACCAG 838
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 780 CCAAAGATACCAACTTGAGAGAACCATGAACACACTTCCGAAACGCCCTGAGAAAACCAG 839
Query 839 AGAACGATTCGAAGAACCTTCGCCTCCTTACCCGTTATGGGATCCAGATTCCTTGATCAG 898
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 840 AGAACGGTTCGAAGAACCTTCGCCTCCTTACCCGTTATGGGACCCGGATTCCTTGATCAG 899
Query 899 GATCCAACCAGAGGAATACGATCCTGATGAATACGGGATACAAAGAAATGAAGACGAGTC 958
||| |||||||||||||| ||||| |||||||||| |||||||||||||||||| |||||
Sbjct 900 GATTCAACCAGAGGAATATGATCCCGATGAATACGCGATACAAAGAAATGAAGATGAGTC 959
Query 959 ATCGTCTTATGGATTGAGGTCATACGTTACATACTTGGACTCAGATACACTTCAGAGATA 1018
|||||||||||||||||| ||||| ||||| || |||||||| ||||| |||||||||||
Sbjct 960 ATCGTCTTATGGATTGAGATCATATGTTACGTATTTGGACTCGGATACGCTTCAGAGATA 1019
Query 1019 CGCCACGATACGTTCTAAAGAAGCCATGACTCTGATTGAGAAGCAGACTCAGGCGCTCTT 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGCCACGATACGTTCTAAAGAAGCCATGACTCTGATTGAGAAGCAGACTCAGGCGCTCTT 1079
Query 1079 TGGACGACCGGACATAAGGATACTCGAGGACGGTAAGCTCGATACTTCTAACGACGAGGT 1138
|||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1080 TGGACGACCGGATATAAGGATACTCGAGGATGGAAAGCTCGATACTTCTAACGACGAGGT 1139
Query 1139 TCTGTCTCTGAGTGTCTCAGGACTTGCGATGTTGGTTTTGGAAGCTGTGGCTTTTGGGTC 1198
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCTGTCTCTGAGTGTCTCTGGACTTGCGATGTTGGTTTTGGAAGCTGTGGCTTTTGGGTC 1199
Query 1199 TTTCTTATGGGATTCAGAGAGCTACGTTGAATCCAAATACCATTTTCTCAAGGCTTGAGT 1258
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1200 TTTCTTATGGGATTCAGAGAGTTACGTTGAATCCAAATACCATTTCCTCAAGGCTTGAGT 1259
Query 1259 TTAGTCCTCCTTGACATTTGTAC-TTTTTGAGAGTAGTGAATATGTAAATGTTAAATCTC 1317
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1260 TTAGTCCTCCTTGACATTTGTACCTTTTTGAGAGTAGTGAAT--GTAAATGTTAAATCTC 1317
Query 1318 TCATCATGTGAAATTGGTAGCAACTCATATATTCGTAAAATGTAATAAA-TTACACTTCA 1376
|||| ||||||||||||||||||| ||| | |||||||||||||||| || |||||||
Sbjct 1318 TCAT---GTGAAATTGGTAGCAACTCCTAT-T-CGTAAAATGTAATAAACTT-CACTTCA 1371
Query 1377 AAACTTTAGA-TTCAAATCAAGCATTAT-AGCTC 1408
|||||||||| || ||||||||||| || |||||
Sbjct 1372 AAACTTTAGACTT-AAATCAAGCAT-ATTAGCTC 1403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69377153190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5