BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473398
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32170.1 | Symbols: XTR4, XTH30 | xyloglucan endotransglucos... 1757 0.0
> AT1G32170.1 | Symbols: XTR4, XTH30 | xyloglucan endotransglucosylase/hydrolase
30 | chr1:11575320-11577927 FORWARD LENGTH=1297
Length=1297
Score = 1757 bits (951), Expect = 0.0
Identities = 1072/1129 (95%), Gaps = 13/1129 (1%)
Strand=Plus/Plus
Query 43 AAACACAAATCATAAATCtttttttttttCATTCCCAGAAAGAATGTCTAAATCATCGTA 102
|||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||
Sbjct 76 AAACACAAATCATAAATC---TTTTTCTTC-TTCCGAGAAAGAATGTCTAAATCATCGTA 131
Query 103 TAATAACATCTTTTTCATCATCATCTTGATCTTGGGTTTGGGTTTGAGATCATCATTAGC 162
|||| || |||| |||||||||||||| |||| ||||||||||||||| |||
Sbjct 132 TAAT--CA-------CATCTTCATCTTGATCTTGTGTTTATGTTTGAGATCATCATCAGC 182
Query 163 CTTCACGAATCTCAACAGCTTAAGCTTTGAAGAATCACTTTCTCCTCTCTTTGGCGATGC 222
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 183 CTTCACGAATCTCAACACCTTAAGCTTTGAAGAATCACTTTCTCCTCTCTTTGGAGATGC 242
Query 223 AAATCTCGTCCGTTCTCCTGATGATCTCTCTGTTCGTCTCCTCCTTGATCGATATACCGG 282
|||||||||||||| |||||||||||||| |||||||| ||||| ||||| ||||||||
Sbjct 243 CAATCTCGTCCGTTCACCTGATGATCTCTCCGTTCGTCTTCTCCTCGATCGCTATACCGG 302
Query 283 TTCTGGTTTCATATCATCGAATATGTATCAACATGGATTTTACAGCTCCATGATCAAGCT 342
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 303 TTCTGGTTTCATATCATCGAATATGTATCAACATGGATTTTACAGCTCCATGATTAAGCT 362
Query 343 TCCCGCTGATTATACCGCCGGCGTCGTCGTCGCATTTTATACATCAAACGGGGACGTGTT 402
||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 363 TCCCGCTGATTATACTGCCGGCGTCGTCGTCGCCTTTTATACATCAAACGGAGACGTGTT 422
Query 403 CGAGAAAACACACGACGAATTAGACATAGAGTTTCTAGGGAACATAAAAGGAAAGCCATG 462
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 423 CGAGAAAACACACGACGAGTTAGACATAGAGTTTCTAGGGAACATAAAAGGAAAGCCGTG 482
Query 463 GAGGTTTCAGACAAATCTATACGGAAATGGAAGTACACATAGAGGTCGTGAAGAGAGATA 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GAGGTTTCAGACAAATCTATACGGAAATGGAAGTACACATAGAGGTCGTGAAGAGAGATA 542
Query 523 TCGTCTCTGGTTCGATCCTTCTAAAGAGTTTCATCGTTATAGCATTCTCTGGACTCCTCA 582
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 543 TCGTCTCTGGTTTGATCCTTCTAAGGAGTTTCATCGTTATAGCATTCTCTGGACTCCTCA 602
Query 583 CAAGATCATATTTTGGGTAGATGATGTGCCAATAAGAGAAGTGATCAGAAACGATGCAAT 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 CAAGATCATATTTTGGGTAGATGATGTGCCAATAAGAGAAGTGATCAGAAACGATGCAAT 662
Query 643 GGGAGCAGATTATCCGGCGAAGCCAATGGCTCTTTACGCCACCATTTGGGATGCTTCCGA 702
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 663 GGGAGCAGATTATCCGGCAAAGCCAATGGCTCTTTACGCCACCATTTGGGACGCTTCTGA 722
Query 703 TTGGGCTACTTCCGGCGGCAAATACAAAGCTAATTACAAATTTGCCCCTTTCGTAGCCGA 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 723 TTGGGCTACTTCCGGCGGCAAATACAAAGCTAATTACAAATTTGCCCCTTTCGTAGCTGA 782
Query 763 ATTCAAATCTTTCTCTCTTGACGGCTGCTCCGTTGATCCTATCCAAGAAGTTCCCGTGGA 822
|||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||| ||||
Sbjct 783 ATTCAAATCTTTCTCTCTAGACGGTTGCTCCGTTGATCCTATTCAAGAAGTCCCCATGGA 842
Query 823 TTGTTCCGACTCAGTCGATTTCCTTGAGTCTCAAGATTACTCTTCCATTAATGCCCATCA 882
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 843 TTGTTCCGACTCAGTCGATTTCCTTGAGTCTCAAGATTACTCTTCCATTAATTCCCATCA 902
Query 883 ACGAGCTGCCATGCGAAGATTTCGACAACGTTTCATGTACTATTCTTACTGTTACGATAC 942
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 ACGCGCCGCCATGCGAAGATTTCGACAACGTTTCATGTACTATTCTTACTGTTACGATAC 962
Query 943 ACTTAGGTATCCTGAGCCTCTGCCAGAGTGTGTCATTGTTCCGGCCGAGAAAGATAGGTT 1002
||||||||||||||||||||| || || ||||| ||||||||||| ||||||||||||||
Sbjct 963 ACTTAGGTATCCTGAGCCTCTACCGGAATGTGTGATTGTTCCGGCTGAGAAAGATAGGTT 1022
Query 1003 TAAGGAAACGGGAAGGTTGAAATTTGGTGGTACGGAGGCGCGTGAACGGCGGAGAAATCG 1062
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TAAGGAAACGGGAAGGTTGAAGTTTGGTGGTACGGAGGCGCGTGAACGGCGGAGAAATCG 1082
Query 1063 ACGGCAGCAACGTCGGCCTGAGATTGAGATTGAGAGTGATCCTGACGACAGAAAACTTTT 1122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 CCGGCAGCAACGTCGGCCTGAGATTGAGATTGAGAGTGATCCTGACGACAGAAAACTTTT 1142
Query 1123 ATAAGATTTGTTTGTGCCAttttttttACTTAAGATTCGTTTGTGAGTA 1171
||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1143 ATAAGATTTGTTTGTGCCATTCTTTTTACTTAAAATTCGTTTGTGAGTA 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57479624025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5