BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473399
Length=2925
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32180.1 | Symbols: ATCSLD6, CSLD6 | cellulose synthase-like... 4290 0.0
> AT1G32180.1 | Symbols: ATCSLD6, CSLD6 | cellulose synthase-like
D6 | chr1:11586516-11589651 REVERSE LENGTH=2940
Length=2940
Score = 4290 bits (2323), Expect = 0.0
Identities = 2753/2956 (93%), Gaps = 47/2956 (2%)
Strand=Plus/Plus
Query 1 ATGATGTACGGAGAATCTCCTATAAGACTTCCCAGAATCAGCCACGTGTCAAATTCCGGC 60
|||||| |||||||||||||| |||||| |||||||||||||||||| ||||||||||||
Sbjct 1 ATGATGGACGGAGAATCTCCTCTAAGACATCCCAGAATCAGCCACGTATCAAATTCCGGC 60
Query 61 AGTGATTTCGGATGCAGCTCCGATCAC-ACCAGTTACATCGTCCATATCCCTCCGACGCC 119
|| ||||||||| ||||||| ||| || || || ||| ||||||| ||||||||||||||
Sbjct 61 AGCGATTTCGGAAGCAGCTCTGATTACAACAAG-TACCTCGTCCAGATCCCTCCGACGCC 119
Query 120 GGACAACAAT-CCGG--C-GCAG--G-TTTCAATCGTTCTCCGGGAATTCGATTTCAATC 172
|||||||||| |||| | || | | ||||||||||||||| |||| |||||| |||||
Sbjct 120 GGACAACAATCCCGGTCCGGC-GTCGCTTTCAATCGTTCTCCTGGAAATCGATTCCAATC 178
Query 173 CGGCCTCGGTTCTGGTTCCATCCGCTCCCGGGGACATCGATTCCGGTTCATCTAGAAAAG 232
|| | || |||||| |||| | |||| ||||||| |||||| |||||| | ||||
Sbjct 179 AGG----AG-TC-GGTTCCGTCCGTTTCCGGAGACATCGTTTCCGGCTCATCTGGTAAAG 232
Query 233 ACAACGAACCGGATCTAACCGATGTGAGAATC-A-GT-gaagaagaagaagaagaTGATA 289
|||||||||||||||||||||||||||||||| | || | |||||||||||||| ||||
Sbjct 233 ACAACGAACCGGATCTAACCGATGTGAGAATCAACGTAGGTGAAGAAGAAGAAGACGATA 292
Query 290 CCTTGCTTTACAAGATATCTCATCCTCTAACTCGTATCGTCAAAATCTCTCCGATCATCA 349
||||||||| |||||||||| || |||| |||||| ||||||||||||||||||||||||
Sbjct 293 CCTTGCTTTCCAAGATATCTTATTCTCTTACTCGTGTCGTCAAAATCTCTCCGATCATCA 352
Query 350 TCGCTCTTTATCGGATTCTGATAGTTGTTCGAGTAGTATCTCTTGTTCTGTTTCTCTTCT 409
||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct 353 TCGCTCTTTATCGGATTCTAATAGTTGTTCGAGTAGTATCTCTAGCTCTGTTTCTCTTCT 412
Query 410 GGAGAATCAGAAACCCAAACAATAAAGCAATATGGTTATGGTTACTCTCTGTAATCTGTG 469
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 413 GGAGAATCAGAAACCCAAACAACAAAGCATTATGGTTATGGTTACTCTCTGTAATCTGTG 472
Query 470 AAATCTGGTTTGCTTTCTCTTGGTTACTCGACCAAATCCCTAAGTTGTTTCCTGTTAACC 529
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 473 AACTCTGGTTTGCTTTCTCTTGGTTACTTGACCAAATCCCTAAGTTGTTTCCTGTGAACC 532
Query 530 ACGCAACCGATATTGAAGCCTTAAAGGCGACATTCGAATCACCAGACCCGAATAACCTGA 589
||||||||||||| |||||||||||||||||||||||| | ||| ||||| |||||| ||
Sbjct 533 ACGCAACCGATATCGAAGCCTTAAAGGCGACATTCGAAACGCCAAACCCGGATAACCCGA 592
Query 590 CCGTGAAATCAGATCTTCCGGGGATTGATGTGTTTGTTTCAACGGCTGATGCAGAGAAAG 649
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCGGGAAATCAGATCTTCCGGGGATTGATGTGTTTGTTTCAACGGCTGATGCAGAGAAAG 652
Query 650 AGCCTCCATTAGTCACAGCCAATACAATTCTTTCGATTTTATCGGTTGATTATCCTGTTG 709
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 653 AGCCTCCATTAGTTACAGCCAACACAATTCTTTCGATTTTATCTGTTGATTATCCTGTTG 712
Query 710 AGAAGCTCTCTTG-TTATATCTCAGATGATGGCGGATCGCTTGTTACATTTGAAGCAATG 768
|||||||||| || |||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 713 AGAAGCTCTC-TGTTTATATCTCAGATGATGGAGGATCGCTTGTTACGTTTGAAGCAATT 771
Query 769 GCTGAAGCGGCTAGCTTTGCCAAAATATGGGTTCCGTTTTGCAGGAAACATAGGATCGAG 828
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||
Sbjct 772 GCTGAAGCGGCTAGCTTTGCGAAAATATGGGTTCCGTTTTGCAGGAAACATAAGATAGAG 831
Query 829 CCGAGGAATCCGGAGAGTTACTTTGGTTTGAAGAGGGATCCTTATAAGGATAAGGTGAGA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CCGAGGAATCCGGAGAGTTACTTTGGTTTGAAGAGGGATCCTTATAAGGATAAGGTGAGA 891
Query 889 CATGATTTTGTTCGAGAGCGACGGTATGTGAAACGAGGTTATGAGGAGTTTAAAGTTCGG 948
||||||||||||||||||||||||||||| ||||||| |||||| |||||||| ||||||
Sbjct 892 CATGATTTTGTTCGAGAGCGACGGTATGTTAAACGAGCTTATGATGAGTTTAAGGTTCGG 951
Query 949 GTTAACGCGCTGCCTCATTCGATTAGAAGGAGATCGGATGCGTATAATAGCAAAGAAGAG 1008
||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 952 GTTAATGCGCTGCCTCATTCGATAAGAAGGAGATCGGATGCGTTTAATAGCAAAGAAGAG 1011
Query 1009 ATTAAAGCTTTAGAGAAATGGAAGCATTGGAAGGTGAAAGTTGAAGAGGATCAAGTTAAG 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1012 ATTAAAGCTTTAGAGAAATGGAAGCATTGGAAGGTGAAAGTTGAAGAGGATCAAATTAAG 1071
Query 1069 GAACCAAGGCCTGCTTTAGTAGCTCCTAAAGCTACTTGGATGAGTGATGGAACTCATTGG 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 GAACCAAGGCCTGCTTTAGTAGCTCCTAAAGCTACTTGGATGAGTGATGGAACTCATTGG 1131
Query 1129 CCCGGTACTTGGGCTGTCCCTTGTCCGCACCATTCGAGAGGCGATCACGTTAGTATTATA 1188
|||||||||||||||||| || | ||||||||||||||||||||||||| |||| |||||
Sbjct 1132 CCCGGTACTTGGGCTGTCTCTGGACCGCACCATTCGAGAGGCGATCACGCTAGTGTTATA 1191
Query 1189 CAGGTGTTGCTTGATCCTCCCGGAGATGAACCGGTTGAAGGGAAAGGCGGTGAGGGGCGC 1248
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 1192 CAGGTGTTGCTTGATCCTCCTGGTGATGAACCGGTGGAAGGGAAAGGCGGTGAGGGGCGC 1251
Query 1249 GCGCTGGATTTTGAAGGAGTAGACATGCGATTACCTATGCTTGTTTACGTGAGCCGTGAG 1308
|| |||||| |||||||||||||||| || ||||| |||||||||||||||||||| |||
Sbjct 1252 GCACTGGATCTTGAAGGAGTAGACATTCGTTTACCAATGCTTGTTTACGTGAGCCGCGAG 1311
Query 1309 AAACGGCCTGGTTATGACCATAATAAGAAGGCAGGAGCTATGAACGCTTTGGTCCGAGCC 1368
||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1312 AAACGTCCTGGTTATGACCATAACAAGAAGGCAGGAGCTATGAACGCTTTGGTCAGAGCC 1371
Query 1369 TCGGCTATAATGTCTAATGGACCGTTCATCTTGAACTTGGATTGTGACCACTATGTCTAT 1428
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1372 TCGGCTATAATGTCTAATGGACCGTTCATCTTGAACTTGGACTGTGACCACTATGTCTAT 1431
Query 1429 AACTCTAGAGCTTTTAGAGATGGGATCTGTTTCATGATGGACCATGACGGCGACCATGTT 1488
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1432 AACTCAAGAGCTTTTAGAGATGGGATCTGTTTCATGATGGACCATGACGGCGACCGTGTT 1491
Query 1489 TCCTATGTTCAGTTTCCGCAGAGGTTTGAAGGAATTGATCCGTCTGACCGCTATGCTAAC 1548
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1492 TCCTATGTTCAGTTTCCGCAGAGGTTTGAAGGAATTGATCCATCTGATCGCTATGCTAAC 1551
Query 1549 AACAATACTGtttttttCGACATTAATCTGCGGGCTCTCGATGGGATCCAAGGTCCGATG 1608
|| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1552 AAGAATACTGTTTTCTTCGACATTAATCTGCGAGCTCTCGATGGGATCCAAGGTCCAATG 1611
Query 1609 TATGTTGGGACGGGGTGTCTCTTCCGTCGAACCGCACTTTACGGTTTCAACCCGCCTGAT 1668
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1612 TATGTTGGGACGGGGTGTCTCTTCCGTCGAACCGCGCTTTACGGTTTCAACCCGCCTGAT 1671
Query 1669 GTTTTTGTGGT-G-G-A-G--------G------ACTGTTTCCCACGGATCAAGAAACGC 1710
||||||||||| | | | | | |||||||||| | |||||||||||||
Sbjct 1672 GTTTTTGTGGTTGAGGAAGAACCTTCTGGTTCCTACTGTTTCCCGCTGATCAAGAAACGC 1731
Query 1711 AGTCGTGCAACCGTAGCTTCTGAACCAGAGCACTACATTGACGATGAGGATGAAGATCGC 1770
|||| ||||||||||||||||||||||||| |||||| |||||| |||||| | | |
Sbjct 1732 AGTCCTGCAACCGTAGCTTCTGAACCAGAGTACTACACTGACGAGGAGGAT-A-G---G- 1785
Query 1771 TTTGATATTGGTTTGATTCGGAAGCAATTCGGTAGCTCGAGTATGCTAGTGAGTTCGGTA 1830
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1786 TTTGATATTGGTTTGATTCGGAAGCAATTCGGTAGCTCGAGTATGCTAGTGAATTCGGTA 1845
Query 1831 AAGGTCGCAGAGTTTCAAGGTAGGCCACTAGCTACAGTTTACTCAAGCCGGCGT-GGACG 1889
||||| ||||||||| ||||||| ||||||||||||||| |||||||||||| | |||||
Sbjct 1846 AAGGTGGCAGAGTTTGAAGGTAGACCACTAGCTACAGTTCACTCAAGCCGGC-TAGGACG 1904
Query 1890 CCCTCCTGGCTCTTTGACTGGAAGCCGCGAACCGCTTGATTTCGCGACTGTAAACGAGGC 1949
||| |||||||||||||||||||||||| |||||||||||||||||||||| || |||||
Sbjct 1905 CCCACCTGGCTCTTTGACTGGAAGCCGCAAACCGCTTGATTTCGCGACTGTGAATGAGGC 1964
Query 1950 TGTTAACGTGATCTCATGCTGGTACGAAGACAAGACGGAATGGGGATTCAACGTTGGATG 2009
|||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 1965 GGTTAACGTGATCTCGTGCTGGTATGAAGACAAGACTGAATGGGGGTTCAACGTTGGATG 2024
Query 2010 GATATATGGTTCCGTAACTGAAGACGTAGTGACCGGTTTTCGAATGCATGAAAAAGGATG 2069
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2025 GATATATGGTTCTGTAACCGAAGACGTAGTGACTGGTTTTCGAATGCATGAAAAAGGATG 2084
Query 2070 GAGATCATTCTACTGCGTAACAGAGCCAGACGCATTCCGCGGAACCGCACCGATAAACCT 2129
|||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||||
Sbjct 2085 GAGATCATTCTACTGCGTGACAGAGCCAGACGCATTCCGTGGAAGCGCACCTATAAACCT 2144
Query 2130 AACTGATCGGCTCCACCAGGTTCTCCGATGGGCCACCGGATCAGTAGAGATCTTCTTCTC 2189
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2145 AACTGATCGACTCCACCAGGTTCTCCGATGGGCTACGGGATCAGTAGAGATCTTCTTCTC 2204
Query 2190 CCGAAACAACGCCATATTCGCCGGTCCAAAACTCAAATTGCTCCAGAGGATCGCTTACCT 2249
|||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 2205 TCGAAACAACGCCATTTTCGCCGGTCCAAAACTCAAACTCCTCCAGAGAATCGCTTACCT 2264
Query 2250 AAACGTCGGAATCTACCCATTCACAAGCATTTTCATCTTAACCTACTGCTTCCTCCCGCC 2309
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2265 CAATGTTGGAATCTACCCATTCACCAGCATTTTCATCTTAACCTACTGCTTCCTCCCGCC 2324
Query 2310 GTTATCTCTCTTCTCCGGTCACTTCGTTGTTGAAACCCTCACCGGATCATTCCTCATTTA 2369
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2325 GTTATCTCTCTTCTCCGGTCACTTCGTTGTTGAAACCCTCACTGGATCATTCCTCATTTA 2384
Query 2370 CCTTTTGATAATCACATTGTCTCTCTGTGGATTAGCTGTTCTTGAAGTCAAATGGTCAGG 2429
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2385 CCTTTTGATTATCACATTGTCTCTCTGTGGATTAGCTGTTCTTGAAGTCAAATGGTCAGG 2444
Query 2430 TATCTCATTAGAAGAATGGTGGAGAAACGAGCAGTTCTGGTTAATAGGCGGCACGAGCGC 2489
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 2445 TATCTCATTAGAAGAATGGTGGAGAAACGAGCAGTTCTGGTTAATCGGTGGCACGAGCGC 2504
Query 2490 ACATTTAGTCGCGGTACTTCAAGGTATACTCAAAGTTATCGCCGGAATCGAAATCTCATT 2549
|||||||||||| ||||| ||||||||||||||||| || |||||| |||||||||| ||
Sbjct 2505 ACATTTAGTCGCTGTACTACAAGGTATACTCAAAGTCATAGCCGGAGTCGAAATCTCCTT 2564
Query 2550 CACCTTGACTGCAAAATCTTCAACAGGAGGAGATGACGAAGACGACGAGTTCGCTGATCT 2609
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2565 CACCTTGACTTCAAAATCTTCAACAGGAGGAGATGATGAAGACGACGAGTTCGCTGATCT 2624
Query 2610 TTATCTCTTTAAATGGACTGCTCTGATGATTCCACCGTTAACAATCATAATCTTGAACAT 2669
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2625 TTATCTGTTTAAATGGACTGCTCTGATGATTCCACCGTTAACAATCATAATCTTGAACAT 2684
Query 2670 CGTAGCGATACTTTTCGCGGTTTGTAGGACGGTTTTCAGCGAGAATCCACAGTGGAGTAA 2729
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 2685 CGTAGCGATACTTTTCGCGGTTTGTAGGACGGTTTTCAGTGCGAATCCACAGTGGAGCAA 2744
Query 2730 TCTTCTTGGAGGGACATTCTTTGCCAGTTGGGTTTTGCTTCATATGTATCCGTTTGCGAA 2789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2745 TCTTCTTGGAGGGACATTCTTTGCCAGTTGGGTTTTGCTTCATATGTATCCGTTTGCCAA 2804
Query 2790 AGGTTTGATGGGAAGAGGAGGAAGAACACCGACAATTGTGTATGTTTGGTCAGGACTTAT 2849
|||||| |||||||||||||||| |||||||||| |||||||||||||||| ||||||||
Sbjct 2805 AGGTTTAATGGGAAGAGGAGGAAAAACACCGACAGTTGTGTATGTTTGGTCGGGACTTAT 2864
Query 2850 CGCTATTTGCTTATCTCTTCTCTATATTACCATTAAGAATTCGGAGATTGATGGAGGATG 2909
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2865 TGCTATTTGCTTGTCTCTTCTCTACATTACCATTAAGAATTCGGAGATTGATGGAGGATC 2924
Query 2910 GTTTATGTTGGCTTAG 2925
||||||||||| ||||
Sbjct 2925 GTTTATGTTGGTTTAG 2940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145383800814
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5