BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473401
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32190.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2326 0.0
> AT1G32190.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:11592955-11595982 REVERSE LENGTH=1624
Length=1624
Score = 2326 bits (1259), Expect = 0.0
Identities = 1521/1639 (93%), Gaps = 52/1639 (3%)
Strand=Plus/Plus
Query 1 GCACTAACCAATTACCTAGGAAACGCACGTTCACTCTCACACGCTTCCTcacaca--cac 58
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1 GCACTAACCAATTACCTAGGAAACGCACGTTCACTTTCACACGCTTCCTCACACACTCAC 60
Query 59 acacacacactcttctctctcttcttcttcctcctcctctgtactctctctttctcACAT 118
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 61 ACACACACACTCTTCTCTCTCTTCTTC-T--TCCTCCTCTGTACTCTCTCTTTCTCACAT 117
Query 119 AACCAGTGGCCAT-TC-ATAtctctctgttcctcttcagtctctctg--ta-cccttctc 173
|||||| ||| | || | |||||||||| ||||||||||||| || || ||||| ||
Sbjct 118 AACCAG-AGCC-TCTCTCTCTCTCTCTGTTTCTCTTCAGTCTCTGTGTATACCCCTT-TC 174
Query 174 cctcctcctctgtctccctctctctAGCGGCGGACTGATGCACACAGCTTTGTATTCTCC 233
||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 175 TCTCCTCCTCTG--TCCCTCTCTCTAGCGGCGGACTGATGCACATACCTTTGTATTCTCC 232
Query 234 GCCGTAACTAACTTACCTAATATGGGGTGCATGTTCTCTCACCTCGCCGCCAAATTCGCC 293
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 233 GCCGTAACTAACTTACAT-A-ATGGGGTGCATGTTCTCTCACCTCGCCGCCAAATTCGCC 290
Query 294 TTCTTCCCACCTTCTCCTCCCACTTACCACCTCACAAAAACCCCCGACGGCAAActctcc 353
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 291 TTCTTCCCACCCTCTCCTCCCACTTACCACCTCACCAAAACCCCCGACGGCAAACTCTCC 350
Query 354 gccgtctcctccgcttcctcctcctcctcaacttttccctccgccgGAGACCCATCTCTC 413
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 351 GCCGTATCCTCCGCTTCCTCCTCCTCCTCCACTTTTCCCTCCGCCGGAGACCCATCTCTC 410
Query 414 GACGTGAAAGTAGTGAAGACAAGACGCGGCAACAAAGTCACAGCTTTTTACCTGAGAAAC 473
||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 411 GACGTCAAAGTAGTAAAGACAAGACGCGGCAACAAAGTCACAGCTTTTTACCTTAGAAAC 470
Query 474 CCTAACGCAAGACTCACACTTCTCTACTCACATGGAAATGCTGCAGATTTGGGACAACTC 533
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 471 CCTAACGCAAGACTCACACTTCTCTACTCTCATGGAAATGCTGCAGATTTGGGACAACTC 530
Query 534 TTCGATCTCTTTGTTCAACTCAAAGTCAATCTCCGAGTCAATCTCATGGGGTATGATTAT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TTCGATCTCTTTGTTCAACTCAAAGTCAATCTCCGAGTCAATCTCATGGGGTATGATTAT 590
Query 594 TCAGGCTATGGAGCTTCTACTGGTAAGCCGAGTGAGTACGATACATATGCGGATATAGAG 653
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 591 TCAGGCTATGGAGCTTCTACTGGTAAGCCGAGTGAGTACGATACATATGCAGATATAGAG 650
Query 654 GCGGTGTATGAGTGTTTGCAGACGGATTATGGGGTCGGGCAAGAAGATTTGATCTTGTAT 713
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 651 GCGGCGTATGAGTGTTTGCAGACGGATTATGGGGTAGGGCAAGAAGATTTGATCTTGTAT 710
Query 714 GGTCAATCTGTTGGCAGCGGACCGACGTTGCACCTTGCCTCTAAGCTTCCCCGGCTTAGA 773
|||||||||||||||||||| || ||| |||||||||||||||||||||| |||||||||
Sbjct 711 GGTCAATCTGTTGGCAGCGGTCCAACGCTGCACCTTGCCTCTAAGCTTCCACGGCTTAGA 770
Query 774 GGTGTGGTTCTTCATAGTGGCATTCTCTCTGGTCTTCGGGTTCTATGTCATGTCAAGTTC 833
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 771 GGTGTCGTTCTTCATAGCGGCATTCTCTCTGGTCTTCGTGTTCTATGTCATGTCAAGTTC 830
Query 834 AAGTTTTGTTGTGACATTTATTCGAACGTAAACAAGATCAAGAAGGTGAAATGCCCGGTT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AAGTTTTGTTGTGACATTTATTCGAACGTAAACAAGATCAAGAAGGTGAAATGCCCGGTT 890
Query 894 CTTGTCATTCATGGAACAGAAGATGATGTGGTGAATTGGTTACATGGAAACAGGCTTTGG 953
|||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 891 CTTGTCATACACGGAACAGAGGATGATGTGGTGAATTGGTTACACGGAAACAGGCTTTGG 950
Query 954 AAAATGGCAAAGGAACCGTATGAACCGCTCTGGATTAAAGGCGGTGGACACTGCAACCTC 1013
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 951 AAAATGGCAAAGGAACCGTATGAACCGCTCTGGATTAAAGGCGGTGGACATTGCAACCTT 1010
Query 1014 GAGATATATCCGGACTACATTAGACATCTCTACCGGTTTATACAAGACATGGAAAATACA 1073
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1011 GAGATATATCCGGACTACATTAGACACCTATACCGGTTTATACAAGACATGGAAAATACA 1070
Query 1074 ACAACTAAGTCTCGTCTCaaaaaaaTTTGGCAAGAAATCCGTCGGCGAGATGAATCCACA 1133
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1071 ACCACTAAGTCTCGTCTCAAAACGATTTGGCAAGAAATCCGTCGGCGAGATGAATCCACA 1130
Query 1134 GGATGTTGTAGTTCCGGACTATGCAGACCTAGCTGCAGTTGTCCCAAACCTCGGTGTCCC 1193
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1131 GGATGTTGTTGTTCCGGACTGTGCAGACCTAGCTGCAGTTGTCCCAAACCTCGGTGTCCC 1190
Query 1194 AAACCTCGGTGTCCCAAACCTAGCTGCAGTTGTGGTTGTGGTTGCAGTGAATGCGGTTGT 1253
|||||| | || | | | || || | | |||||||| | | | |||||||||
Sbjct 1191 AAACCTAGTTG-C--AGT--T-GCGGC--T-GCGGTTGTGG---C-G--ACTGCGGTTGT 1235
Query 1254 TTCAAGTGTTCATGTCCGTCGTTGAAGGGATGTTTCTCTTGCTGCAAGAAACCGAGCTGT 1313
||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1236 TTCAAGTGTTCGTGTCCGACTTTGAAGGGATGTTTCTCTTGCTGCAAGAAACCGAGCTGT 1295
Query 1314 TTTAGTAGTTGTTGCTGTCCCAAGTTCAAATGCAGCAGCTGCTTTGGGAAGCCAAAATGT 1373
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1296 GTTAGTAGTTGTTGCTGTCCCACGTTCAAATGCAGCAGCTGCTTTGGGAAGCCAAAATGT 1355
Query 1374 CCGAAATGCTCTTGTTGGAAATGTTTAAAATGCCCCGAGACCGAGTGTTGTTGGAGTAGT 1433
|||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 1356 CCGAAATGCTCTTGTTGGAAATGTCTAAAATGCCCCGACACCGAGTGTTGCCGGAGTAGT 1415
Query 1434 TGTTGCTGTCCCGGTTGTTTTAGCTGGTTGTGTTGCTGCGGCggagggaggaggaaagag 1493
||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1416 TGTTGTTGTTCCGGTTGTTTTAGCTGGTTGTGTTGCTGCGGTGGAGGGAGGAGGAAAGAG 1475
Query 1494 ggggagaggagaggaacaggaACTACTACGGTGGCTAAGAGTGAAGGGTAATATTGGTAT 1553
||||||||||||||| | ||||||| ||| ||||||||||||| |||||||||
Sbjct 1476 GGGGAGAGGAGAGGATC------TACTACGTTGGAGAAGAGTGAAGGGTGATATTGGTA- 1528
Query 1554 TTTGATATTTTTGTATAGATTTTGTTCAAAAGATTTGGTAAAA--CATTAGGAGATTCAT 1611
|| || |||||||||||||||||| |||||||||||| |||||| ||||||||
Sbjct 1529 ----AT-TT---GTATAGATTTTGTTCAAA-GATTTGGTAAAAAACATTAGAAGATTCAT 1579
Query 1612 TGGAA-GAGACTGAGATTT 1629
|||| |||||||||||||
Sbjct 1580 -GGAAAGAGACTGAGATTT 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80471473635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5