BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473407
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
AT5G34837.1 | Symbols: | transposable element gene | chr5:1300... 1415 0.0
AT5G28710.1 | Symbols: | transposable element gene | chr5:1075... 1173 0.0
> AT5G34837.1 | Symbols: | transposable element gene | chr5:13005694-13006653
FORWARD LENGTH=960
Length=960
Score = 1415 bits (766), Expect = 0.0
Identities = 899/960 (94%), Gaps = 21/960 (2%)
Strand=Plus/Plus
Query 1 GATTCAACGAATCCATATAATCATACTTCAAGCTTTATAAACCTGTTGAACAGTCAAGAT 60
|||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 3 GATTCACCGAATCCATATCATCATACTTCAAGCTTTATAAACCTTTTGAACAGTCAAGAT 62
Query 61 GACAGTCACATTCTCCCATCAAATCCATATGAATGCTTGGAACTTGGATCAACAAATGTC 120
|||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 63 GACAGTCACATTCTCCCACCAAATCCATATGAATGCTTTGAACTTGGATCAGCAAATGTC 122
Query 121 TCTGTGTTTAGCACTGATTGGTCTGATGATGATCTAAGTGAAGATGAAACACCAATTGCT 180
|||||| ||||||||| |||||||||||||||| ||||||||||||| |||||||||||
Sbjct 123 CCTGTGTATAGCACTGAGTGGTCTGATGATGATCCAAGTGAAGATGAAGCACCAATTGCT 182
Query 181 --------GGGAAGAAA--G--G--A---AAGAAAGCCAAGAAACCAAGGAGGAATTGGT 223
||||||||| | | | ||||||| ||||||||||| |||||||||||
Sbjct 183 GGGAAAAAGGGAAGAAAGGGAAGAAAGGGAAGAAAGTCAAGAAACCAAAGAGGAATTGGT 242
Query 224 CTTCAACTGAAGATGTTGTTCTCATAAGTGGGTGGCTGAACACTTCCAAAGATCCGGTGG 283
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 243 CATCAACTGAAGATGTTGTTCTCATAAGTGGGTGGCTGAACACTTCCAAGGATCCGGTGG 302
Query 284 TGGGCAATGAGCAAAAGGGGGCAGCGTTCTGGGAACGTATAGCATCGTACTACAACTCAA 343
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 303 TGGGCAATGAGCAAAAGGGGGCAGCTTTCTGGGAACGTATAGCAGCGTACTACAACTCAA 362
Query 344 GTCCCAAGCTCAAAGGTGTGGAAAAGAGAGGCCACATATGTTGTAAACAGAGGTGGTCAA 403
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 363 GTCCCAAGCTCAAAGGTGTGGAAAAGAGAGGCCACATATGTTGTAAACAAAGGTGGTCAA 422
Query 404 AAGTGAATGACGCCGTGAACAAGTTTGTAGGGAGCTACTTGGCCGCAAGCAAACAACAAA 463
|||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 423 AAGTGAATGATGTTGTGAACAAGTTTGTAGGGAGCTACTTGGCTGCAAGCAAACAACAAA 482
Query 464 CAAGTGGTCAGAATGATGATGATGTGGTGTCTATGGCACATCAGATCTTCTCGAAAGATT 523
|||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 483 CAAGTGGTCAAAATGATGATGATGTGGTGTCTTTGGCACATCAGATCTTCTCAAAAGATT 542
Query 524 ATGGCTGCAAGTTTACTTGTGAGCATGCTTGGAGGGAGCTTAGATATGATCAAAAGTGGA 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 ATGGCTGCAAGTTTACTTGTGAGCATGCTTGGAGGGAGCTTAGATATGATCAAAAGTGGA 602
Query 584 TTGGTCAGTCTACTCATGGGAAAGCAAAGAGAAGAAAATGTGAAGCTGACTCTG-ACTTT 642
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 603 TTGCTCAGTCTACTCATGGGAAAGCAAAGAGAAGAAAATGTGAAGATGACTCTGAAC-CT 661
Query 643 GTTGGCGTTGAAGACAAGGAAGCTCGTCCCATTGGTGTTAAGGCTGCCAAAGCCGCAGCC 702
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 662 GTTGGCCTTGAAGACAAGGAAGCTCGTCCCATTGGTGTTAAGGCGGCCAAAGCCGCAGCC 721
Query 703 AAAGCTAAA-GACAAAGCCAAGCTAAGTCCGGTTGAAGGTGAAGAAACCAATGCTTTGAA 761
||||| ||| || |||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 722 AAAGCCAAAGGA-AAAGGCAAGCTAAGTCCGGATGAAGGTGAAGAAACCAATGCTTTGAA 780
Query 762 GGAGATACAAAGTATCTGGGAGATAAAACAGAAAGATCACGCTGCCAAAGAGAAGCTAAT 821
||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 781 GGAGATAAAAAGTATATGGGAGATAAAAGAGAAAGATCACGCTGCCAAAGAGAAGCTAAT 840
Query 822 CATTATTAAAGAGAAGAAAAATAGGACTAAGTTGCTTGAGCGTCTGTTAGGGAAAACAGA 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CATTATTAAAGAGAAGAAAAATAGGACTAAGTTGCTTGAGCGTCTGTTAGGGAAAACAGA 900
Query 882 ACCTCTATTTGACATAGAGATTGATCTTAAGAACAAGTTAATCAGTGAGTTGTTGGCTTG 941
|||||||| ||||||||||||||| || |||||||||||||||| |||||||||||||||
Sbjct 901 ACCTCTATCTGACATAGAGATTGAACTGAAGAACAAGTTAATCAATGAGTTGTTGGCTTG 960
> AT5G28710.1 | Symbols: | transposable element gene | chr5:10757991-10758887
REVERSE LENGTH=897
Length=897
Score = 1173 bits (635), Expect = 0.0
Identities = 849/943 (90%), Gaps = 52/943 (6%)
Strand=Plus/Plus
Query 1 GATTCAACGAATCCATATAATCATACTTCAAGCTTTATAAACCTGTTGAACAGTCAAGAT 60
|||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 4 GATTCAACGAATTCATATCATCATACTTCAAGCTTTATAAACCTTTTGAACAGTCAAGAT 63
Query 61 GACAGTCACATTCTCCCATCAAATCCATATGAATGCTTGGAACTTGGATCAACAAATGTC 120
|||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GACAGTCACAATCTCTCACCAAATCCATATGAATGCTTGGAACTTGGATCAACAAATGTC 123
Query 121 TCTGTGTTTAGCACTGATTGGTCTGATGATGATCTAAGTGAAGATGAAACACCAATTGCT 180
|||||||||||||||| |||||||||||||||| ||||||||||||| ||| |||||||
Sbjct 124 CCTGTGTTTAGCACTGAGTGGTCTGATGATGATCCAAGTGAAGATGAAGCACTAATTGCT 183
Query 181 GGGAAGAAAGGAAAGAAAGCCAAGAAACCAAGGAGGAATTGGTCTTCAACTGAAGATGTT 240
||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||| ||
Sbjct 184 GGGAAGAAAGGGAAGAAAGCCAAGAAACCAAGGAGGAATTGGTCATCAATTGAAGATATT 243
Query 241 GTTCTCATAAGTGGGTGGCTGAACACTTCCAAAGATCCGGTGGTGGGCAATGAGCAAAAG 300
||||||||| |||||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 244 GTTCTCATATGTGGGTGGCTGAACACTTCCAAGGATCCGATGGTGGGCAATGAGC-AAA- 301
Query 301 GGGGCAGCGTTCTGGGAACGTATAGCATCGTACTACAACTCAAGTCCCAAGCTCAAAGGT 360
|| | ||| | || ||| | || |||||| ||||||||||||
Sbjct 302 -----AG-G----GGG--C----AG---CGT--T----CTGAAGTCCAAAGCTCAAAGGT 336
Query 361 GTGGA-AAAGAGAGGCCACATATGTTGTAAACAGAGGTGGTCAAAAGTGAATGACGCCGT 419
||||| ||| ||||||||||||||||||||||| | ||| ||||||||||||||| ||||
Sbjct 337 GTGGAGAAA-AGAGGCCACATATGTTGTAAACACATGTGATCAAAAGTGAATGACACCGT 395
Query 420 GAACAAGTTTGTAGGGAGCTACTTGGCCGCAAGCAAACAACAAACAAGTGGTCAGAATGA 479
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 396 GAACAAGTTTGTAGGGAGCTACTTGACCGCAAGCAAACAACAAACTAGTGGTCAGAATGA 455
Query 480 TGATGATGTGGTGTCTATGGCACATCAGATCTTCTCGAAAGATTATGGCTGCAAGTTTAC 539
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TGATTTTGTGGTGTCTTTGGCACATCAGATCTTCTCGAAAGATTATGGCTGCAAGTTTAC 515
Query 540 TTGTGAGCATGCTTGGAGGGAGCTTAGATATGATCAAAAGTGGATTGGTCAGTCTACTCA 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 516 TTGTGAGCATGCTTGGAGGGAGCTTAGATATGATCAAAAGTGGATTGCTCAGTCTACTCA 575
Query 600 TGGGAAAGCAAAGAGAAGAAAATGTGAAGCTGACTCTGACTTTGTTGGCGTTGAAGACAA 659
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 576 TGGGAAAGCAAAGAGAAGAAAATGTGAAGCTGACTCTGACTCTGTTGGCGTTGAAGACAA 635
Query 660 GGAAGCTCGTCCCATTGGTGTTAAGGCTGCCAAAGCCGCAGCCAAAGCTAAAGACAAAGC 719
|||||||||||||||| ||||||| |||||||||||||| | || || ||||
Sbjct 636 GGAAGCTCGTCCCATTAGTGTTAAAGCTGCCAAAGCCGC--C-AA-GC-AAAG------- 683
Query 720 CAAGCTAAGTCCGGTTGAAGGTGAAGAAACCAATGCTTTGAAGGAGATACAAAGTATCTG 779
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 -----T----CCGGTTGAAGGTGAAGAAACCAATGCTTTGAAGGAGATACAAAGTATCTG 734
Query 780 GGAGATAAAACAGAAAGATCACGCTGCCAAAGAGAAGCTAATCATTATTAAAGAGAAGAA 839
|||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 735 GGAGATAAAAGATAAAGATCACGCAGCGAAAGAGAAGCTAATCATTATTAAAGAGAAGAA 794
Query 840 AAATAGGACTAAGTTGCTTGAGCGTCTGTTAGGGAAAACAGAACCTCTATTTGAC-ATAG 898
|||||||||||||||||||||||||||||||||||||||| ||||||||| | | ||||
Sbjct 795 AAATAGGACTAAGTTGCTTGAGCGTCTGTTAGGGAAAACAAAACCTCTATCT-ATTATAG 853
Query 899 AGATTGATCTTAAGAACAAGTTAATCAGTGAGTTGTTGGCTTG 941
|||||||||||||||| |||||||||| |||||||||||||||
Sbjct 854 AGATTGATCTTAAGAAAAAGTTAATCAATGAGTTGTTGGCTTG 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014478652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5