BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473408
Length=1752
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32200.1 | Symbols: ATS1, ACT1 | phospholipid/glycerol acylt... 2750 0.0
> AT1G32200.1 | Symbols: ATS1, ACT1 | phospholipid/glycerol acyltransferase
family protein | chr1:11601781-11605060 REVERSE
LENGTH=1787
Length=1787
Score = 2750 bits (1489), Expect = 0.0
Identities = 1686/1776 (95%), Gaps = 34/1776 (2%)
Strand=Plus/Plus
Query 1 CACACGCTCTGCTTCGTCCAATCACCAAACACGCTTTAATGACTCTCACGTTTTCCTCCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 CACACGCTCTGCTTCGTCCAATCACCAAACACGCTTTAATGACTCTCACGTTTTCCTCCT 81
Query 61 CCGCCGCAACCGTTGCCGTTGCTGCTGCAACCGTAACCTCCTCCGCTAGGGTTCCGGTTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 CCGCCGCAACCGTTGCCGTTGCTGCTGCAACCGTAACCTCCTCCGCTAGGGTTCCGGTTT 141
Query 121 ATCCACTCGCTTCGTCGACTCTTCGCGGATTCGTTTCTTTCAGATTAACCGCGAAGAAGC 180
||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 142 ATCCACTCGCTTCGTCGACTCTTCGTGGATTAGTATCTTTCAGATTAACCGCGAAGAAGC 201
Query 181 TGTTTCTGCCGCCTCTTCGTTCTCGCGGCGGCGTTAGTGTGAGAGCGATGTCTGAGCTTG 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 202 TGTTTCTGCCGCCTCTTCGTTCTCGCGGCGGCGTTAGTGTGAGAGCCATGTCTGAGCTTG 261
Query 241 TTCAGGATAAGGAATCTTCCGTTTCGGCGAGCATTGCTTTAAATGAAACCGCCGGTGAGA 300
|||||||||| ||||| ||||| |||||||||||||||| |||||| ||||||||||||
Sbjct 262 TTCAGGATAAAGAATCGTCCGTCGCGGCGAGCATTGCTTTCAATGAAGCCGCCGGTGAGA 321
Query 301 CGCCGAGTGAGCTTAATCATTCCCGTACTTTCTTGGATGCGCGAAGTGAACAAGATCTTT 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 CGCCGAGTGAGCTTAGTCATTCCCGTACTTTCTTGGATGCGCGAAGTGAACAAGATCTTT 381
Query 361 TATCTGGTATCAAGAAGGAAGCTGAAGCTGGAAGGTTGCCTGCAAATGTTGCATCAGGAA 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 382 TATCTGGTATCAAGAAGGAAGCTGAAGCTGGAAGGTTGCCAGCAAATGTTGCAGCAGGAA 441
Query 421 TGGAAGAATTGTATTGGAACTACAAAAATGCAGTTTTAAGTAGCGGAGCTTCTAGGGCAG 480
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 442 TGGAAGAATTGTATTGGAACTACAAAAATGCAGTTTTAAGTAGTGGAGCTTCCAGGGCAG 501
Query 481 ATGAGACTGTTATATCAAACATGTCTGTTGCTTTTGATCGTATGCTTCTTGGTGTGGAGG 540
|||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 502 ATGAAACTGTTGTATCAAACATGTCTGTTGCTTTTGATCGCATGCTTCTTGGTGTGGAGG 561
Query 541 ATCCTTATACTTTTAATCCATATCATAAAGCAGTCAGAGAACCATTTGACTACTACATGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 ATCCTTATACTTTTAATCCATATCATAAAGCAGTCAGAGAACCATTTGACTACTACATGT 621
Query 601 TTGTCCATACATACATTCGTCCTCTGATTGATTTCAAAAATTCGTACGTTGGAAATGCTT 660
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 622 TTGTCCATACATACATCCGTCCTCTTATTGATTTCAAAAATTCGTACGTTGGAAATGCTT 681
Query 661 CTATATTCTCTGAGCTGGAAGACAAGATTCGGCAGGGACACAATATCGTGTTGATATCAA 720
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 682 CTATATTCTCTGAGCTGGAAGACAAGATTCGACAGGGACACAATATCGTGTTGATATCAA 741
Query 721 ACCATCAGAGTGAAGCTGATCCGGCGGTCATTTCTCTTTTGCTTGAAGCACAGTCTCCTT 780
||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 742 ACCATCAAAGTGAAGCTGATCCGGCTGTCATTTCTCTATTGCTTGAAGCACAATCTCCTT 801
Query 781 TCATTGGAGAGAACATTAAATGTGTGGCTGGTGATCGAGTCATCACTGATCCTCTTTGTA 840
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 TCATAGGAGAGAACATTAAATGTGTGGCTGGTGATCGAGTCATCACTGATCCTCTTTGTA 861
Query 841 AGCCGTTTAGTATGGGAAGGAACCTCATATGTGTTTACTCGAAAAAGCACATGAATGATG 900
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 AGCCGTTCAGTATGGGAAGGAACCTCATATGTGTTTACTCGAAAAAGCACATGAATGATG 921
Query 901 ATCCCGAGCTTGTTGACATGAAAAGAAAAGCAAACACACGAAGCTTAAAGGAGATGGCTA 960
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 ATCCTGAGCTTGTTGACATGAAAAGAAAAGCAAACACACGAAGCTTAAAGGAGATGGCTA 981
Query 961 CAATGCTAAGGTCTGGCGGTCAACTTATATGGATTGCACCAAGCGGTGGAAGAGACCGCC 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 982 CAATGCTAAGGTCTGGCGGTCAACTTATATGGATTGCACCAAGCGGTGGAAGGGACCGCC 1041
Query 1021 CGAATCCTTCTACAGGAGAATGGTTTCCCGCACCCTTTGATTCTTCTTCGGTAGACAACA 1080
||||||||||||| || ||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1042 CGAATCCTTCTACTGGGGAATGGTTTCCTGCACCCTTTGATGCTTCTTCGGTAGACAACA 1101
Query 1081 TGAGAAGACTAGTTGAACATTCTGGTGCTCCTGGACATATATATCCAATGTCTTTGCTTT 1140
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1102 TGAGAAGACTGGTTGAACATTCTGGCGCTCCTGGACATATATATCCAATGTCTTTGCTTT 1161
Query 1141 GCTATGACATCATGCCCCCTCCACCACAAGTTGAGAAAGAAATTGGAGAGAAAAGATTAG 1200
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 1162 GCTATGACATCATGCCCCCTCCACCCCAGGTTGAGAAAGAAATCGGAGAGAAAAGATTAG 1221
Query 1201 TTGGGTTTCACGGTACTGGACTATCAATTGCTCCTGAAATCAGCTTCTCAGATGTCACAG 1260
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1222 TTGGGTTTCACGGTACTGGACTATCAATTGCTCCTGAAATCAACTTCTCAGACGTCACAG 1281
Query 1261 CAGACTGCGAGAACCCTAATGAGGCGAAAGAAGCATACAGCCAAGCTTTGTACAAGTCGG 1320
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 CAGACTGCGAGAGCCCTAATGAGGCGAAAGAAGCATACAGCCAAGCTTTGTACAAGTCGG 1341
Query 1321 TCAATGAACAATACGAGATCTTAAACTCAGCGATTAAACACAGAAGAGGAGTAGAAGCAT 1380
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1342 TGAATGAACAATACGAGATCTTAAACTCTGCGATTAAACACAGAAGAGGAGTAGAAGCAT 1401
Query 1381 CAACGTCA-GCTGTCTCCTTGTCACAACCTTGGAATTAGTCTCTCTCATTTTAGGGATAC 1439
|||| ||| | ||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1402 CAACTTCAAGG-GTCTCTTTGTCACAACCTTGGAATTAGTCTCTCG--TTTTAGGGATAC 1458
Query 1440 ACAACGCACAATCAATGGAAA-TACTCaaaaaaa-------TGGAGATATTATTCACACG 1491
|||| ||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1459 ACAAA-CACAATCAATGGAAAATACTCAAAAAAAAAAAAAATGGAGATATTATTCACACG 1517
Query 1492 TTTTCCTAGGGAGtttttttt-------A---G--TTCCAAAGCCTCCTTGAAACAACAA 1539
|| |||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 1518 TTGTCCTAGGGAGTTTTTTTTTTTTTTCAAACGAGTTCCAAAGCCTCCTTGAAACAACAA 1577
Query 1540 GAAACaaaaaaaCAGGTACGTTGTTGGTT-CTAACGTAGGAAGAAGAAGT--TTGGTTTG 1596
|||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1578 GAAAAAAAAAAACAGGTACGTTGTTGGTTTCTAACGTAGGAAGAAGAAGAAGTTGGTTTG 1637
Query 1597 TGTACATATGAATAGTGAGAGAAAACAAACTCTTGCTAGGCTCTTAGAGATTCACATATG 1656
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1638 TGTACATATGAATAGTGAGAGAAAACAAACTCTTGCTAGGCTCTTAGATCT-CACATATG 1696
Query 1657 CTTTCATATGTAGTAATATTCTTTTCttttttttGAGGGATTCCTACTATATAGAGCCGA 1716
||||||||||| | |||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1697 GTTTCATATGTA--A-TATTCTTTTCTTTTTTG-GAGGT-TTCCTACTATATAGAGCCGA 1751
Query 1717 ATAATTCACAATCCCAATTTATGCCTCTTCCTTCTC 1752
||||||||||||||||||||||||||||||||||||
Sbjct 1752 ATAATTCACAATCCCAATTTATGCCTCTTCCTTCTC 1787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86646140670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5