BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473411
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32220.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1705 0.0
> AT1G32220.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:11607854-11609733 FORWARD LENGTH=1217
Length=1217
Score = 1705 bits (923), Expect = 0.0
Identities = 1007/1048 (96%), Gaps = 4/1048 (0%)
Strand=Plus/Plus
Query 1 TTGCTTCAATTCCGCCGAAT-TGTACCAACCACATTTTTCTCGCTTTGCCGTCTTCTCCG 59
|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 42 TTGCTTCAATTCCGCCGAGTAAGTAGTAACCACATTTTTCTCGCTTTGCCGTCTTCTCCG 101
Query 60 GCGATTTTCAGACACTAGTTTTCTCTCCGGTTATTACAATCAAATTTTCTGTCGG-A-AT 117
||||||||||||||||| |||||||||||||| || |||||| |||||||||||| | ||
Sbjct 102 GCGATTTTCAGACACTAATTTTCTCTCCGGTTGTTGCAATCATATTTTCTGTCGGAAGAT 161
Query 118 ATTGAAATCAGAAACCGGG-AAAATGACTTCGTTTCTTAGTTTCTCCGCCATTTCAGCTC 176
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 162 ATTGAAATCAGAAACCGGGAAAAATGACTTCGTTTCTTAGTTTCTCCGCCATTTCAGCTC 221
Query 177 ATCCACCTACTTTTTCCGGCGCTTCATTTCGTCCTCGCTCTTTCTCTCCCCGATTGTTTA 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 222 ATCCACCTACTTTTTCCGGCGCTTCATTTCGTCCTCGCTCTTTCTCTCCCCGATTGTTCA 281
Query 237 AGTCTTGTGTTAAGTGCACTTATGCTGAAGCTGGATTAAGTAGTGATTCATGGTCAGCCC 296
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 282 AGTCTTGTGTTAAGTGCACTTATGCTGAAGCTGGATTAAGCAGCGCTTCATGGTCAGCCC 341
Query 297 CTATTGACGTTGTGGCAGATGTCAAATCCGAAAGGGTTGTAGTTCTTGGTGGCAATGGTT 356
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 342 CTATTGACATTGTGGCAGATGTCAAATCCGAAAGGGTTGTAGTTCTTGGTGGGAATGGTT 401
Query 357 TTGTTGGCTCAGCTATCTGCAAAGCAGCAATCTCTAATGGTATTGAGGTTGTGAGTGTTA 416
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 402 TCGTTGGCTCAGCTATCTGCAAAGCAGCAATCTCCAATGGTATTGAGGTTGTGAGTGTTA 461
Query 417 GCAGGTCAGGTCGTCCTAACTTCCAAGATTCATGGTTGGATCAGGTTACATGGGTTACTG 476
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 462 GCAGGTCAGGTCGTCCTAACTTCGAAGATTCATGGTTGGATCAGGTTACATGGGTTACTG 521
Query 477 GTGATATTTTCTATTTGAATTGGGATGAAGTACTTCTTGGTGCTACTGCTGTAGTTTCGA 536
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 522 GTGATGTTTTCTATTTGAATTGGGATGAAGTACTTCTTGGTGCTACTGCTGTAGTTTCAA 581
Query 537 CCATTGGTGGTTTTGGAAATGAAGAACAGATGAAAAGAATCAATGGTGAAGCTAACGTTA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 CCATTGGTGGTTTTGGAAATGAAGAACAGATGAAAAGAATCAATGGTGAAGCTAACGTTA 641
Query 597 CCGCTGTGAATGCTGCTAAGGATTTCGGGGTTCCTAAGTTCGTCTTGATCACGGTTCACG 656
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 642 CCGCTGTGAATGCTGCTAAGGATTTTGGGGTCCCTAAGTTCGTCTTGATCACGGTTCACG 701
Query 657 ATTACAATCTTCCGCCATTTATTCTCTCCAGCGGATATTTCACCGGAAAACGTAATGCAG 716
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || |
Sbjct 702 ATTACAATCTTCCGCCATTTATTCTCTCCAACGGATATTTCACTGGAAAACGTAACGCGG 761
Query 717 AGGCAGAACTTCTTTCCAAATATCCCACCTCAGGAGTTGTGCTAAGACCCGGTTTCATAT 776
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 762 AGGCAGAACTTCTTTCCAAGTATCCCACCTCAGGAGTTGTGCTAAGACCCGGTTTCATAT 821
Query 777 ACGGGAAAAGAAAAGTGAACGGAATCGAGGTCCCTCTTGATCTAGTCGGGGAGCCACTAG 836
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 822 ACGGGAAACGAAAAGTGAACGGAATCGAGGTCCCGCTTGATCTAGTCGGGGAGCCACTAG 881
Query 837 ACAAGATCTATGATTCTGCAGAGAGGTTCATTAGACCGTTGAGGTCTCTCCCTGCATCTG 896
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 882 ACAAGATCTATGATTCAGCAGAGAGGTTCATTAGACCATTGAGGTCTCTCCCTGCATCTG 941
Query 897 ATCTCATCTTGGCGCCACCGGTTAACGTCGATGATTTAGCACTTGCTGTCATTAACGCCA 956
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 942 ATCTCATCTTGGCTCCACCGGTTAACGTCGATGATTTAGCACTTGCTGTGATCAACGCTG 1001
Query 957 TTAAAGATGACGACTTCTTTGGCATTTTCACTATTGAACAGATCAAAGAAGCAGCTGCAA 1016
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1002 TTAAAGATGACGACTTCTTTGGCATTTTCACTATTGAGCAGATCAAAGAAGCAGCTGCAA 1061
Query 1017 AAATGAGAGTGTGAAGAGTCTTTAGATA 1044
||||||||| ||||||||||||||||||
Sbjct 1062 AAATGAGAGCGTGAAGAGTCTTTAGATA 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5