BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473413
Length=2534
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32230.1 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE prot... 3629 0.0
> AT1G32230.1 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE protein-protein
interaction domain protein family | chr1:11612118-11616218
FORWARD LENGTH=2582
Length=2582
Score = 3629 bits (1965), Expect = 0.0
Identities = 2271/2413 (94%), Gaps = 43/2413 (2%)
Strand=Plus/Plus
Query 144 TTTTCTGGTTAGCTTTTGCTTTTACAGAGATTATTACCCTTGTTGCCTCAGCGATCGATC 203
||||||||| ||||||||||||| || |||||||||||||||| ||||||||||
Sbjct 190 TTTTCTGGTCAGCTTTTGCTTTT----AG---ATTACCCTTGTTGCCT--GCGATCGATC 240
Query 204 TGaaaaaaaaGGAACGCCATCTTGCCGACGGCTGTTATATAAAAGACGGTGGCATTTCTT 263
|||||||| |||||| ||||||| ||||||||||||| ||||||| ||||||||||||
Sbjct 241 TGAAAAAAGAGGAACTTTATCTTGCTGACGGCTGTTATA-AAAAGAC-GTGGCATTTCTT 298
Query 264 CTCTGATTGTGTTTATTTTTATGACGGAGAAGATGAACACACTTGTAATCTATCAGCCTC 323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 299 CTCTGATTGTGTTTATTTTTATGACGGAGAAGATGAACACACTTGTAATCTATCAGACTC 358
Query 324 TAACTGTTACTGTTGGTGTTTTCTAATGCTGTCGGCAAGACACTATCTTTAGGAGTGCTA 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 359 TAACTGTTACTGTTGGTGTTTTCTAATGCTGTCGGCAAGACACTATCTTTAGGACTGCTA 418
Query 384 GGGAGTTTAGAGGTTACTCAGTTGACTTTTTCTTTCAAGGTTATAGGTTTAGTATTGTTA 443
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 419 GGGAGTTTAGAGGTTACACAGTTGACTTTTTCTATCAAGGTTATAGGTTTAGTATTGTTA 478
Query 444 ATATATAGAAATGGAAGCCAAGATCGTCAAGGTGTTGG---GTAGTAGGTGTGAAGATGG 500
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 479 ATATATAGAAATGGAAGCCAAGATCGTCAAGGTGTTGGATAGTAGTAGGTGTGAAGATGG 538
Query 501 ATTCGGGAAGAAGAGGAAGCGCGCAGCAAGCTATGCTGCATATGTTACTGGAGTTTCGTG 560
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATTCGGAAAAAAGAGGAAGCGCGCAGCAAGCTATGCTGCATATGTTACTGGAGTTTCGTG 598
Query 561 TGCAAAGCTGCAAAATGTGCCCCCACCGAACGGGCTGTGCCAAATTCCTGACAAAAGAAG 620
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 599 TGCAAAGCTGCAAAATGTGCCCCCACCGAACGGGCAGTGCCAAATTCCTGACAAAAGAAG 658
Query 621 AAGGCTGGAAGGTGAAAATAAGCTTAGCGCTTATGAGAATCGCTCTGGGAAGGCACTGGT 680
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 659 AAGGCTGGAAGGTGAAAACAAGCTTAGCGCTTACGAGAATCGCTCTGGGAAGGCGCTGGT 718
Query 681 CAGATACTACACTTATTTTAAGAAGACGGGAATCGCTAAACGTGTTATGATCTACGAAAA 740
|||||| |||||||||||||||||||| ||||||||||||||||||||||| || || ||
Sbjct 719 CAGATATTACACTTATTTTAAGAAGACTGGAATCGCTAAACGTGTTATGATGTATGAGAA 778
Query 741 TGGTGAATGGAATGATTTGCCTGAGCATATTATATGCGCCATCCGGAATGAATTAGATGA 800
||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||
Sbjct 779 TGGCGAATGGAATGATTTGCCTGAGCACGTTATATGCGCCATCCAGAATGAATTAGAAGA 838
Query 801 AAAGAGAGCCGCAATTGAGTTCGAGTTGTGCGGTCACAATTTTATCTTGGACTTCTTGCA 860
|||||| ||||||||||||||| |||| |||||||||| |||||| ||||||||||||||
Sbjct 839 AAAGAGCGCCGCAATTGAGTTCAAGTTATGCGGTCACAGTTTTATTTTGGACTTCTTGCA 898
Query 861 CATGCATAGACTAGACTTGGGAACAGGGGCAAAAACCCCACTAGCATGGATTGACATTGG 920
|||||| ||||||||| ||| |||||| ||||||||||| || ||||||||||||| ||
Sbjct 899 CATGCAAAGACTAGACATGGAAACAGGAGCAAAAACCCCTCTTGCATGGATTGACAATGC 958
Query 921 AGGCAAGTGTTTTTTCCCTGAAATTTACGAGAGTGATGAAAGGACCAATTGCTGCCATCA 980
||| ||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 959 AGGAAAGTGCTTTTTCCCTGAAATTTATGAGAGTGATGAAAGGACCAATTACTGCCATCA 1018
Query 981 TAACTTTGTGGAAGATCCAAAACAGAATGCTCCCCATGATATCAAACTGCGCCTTGAGAT 1040
||| | ||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1019 TAAATGTGTGGAAGACCCAAAACAGAATGCTCCTCATGATATCAAACTTCGCCTAGAGAT 1078
Query 1041 TGACGTTAATGGTGGCGAGTCACCGAGGTTAAATTTGGAGGAGTGCAGTGATGAGTCTGG 1100
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TGATGTTAATGGTGGCGAGACACCGAGGTTAAATTTGGAGGAGTGCAGTGATGAGTCTGG 1138
Query 1101 TGAT-A-AT-ATGGACGATGTTCCCCTTGCTCAACGATCTTCAAATGAGCACTATGACGA 1157
|||| | || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1139 TGATAATATGATGGACGATGTTCCCCTTGCTCAACGATCTTCAAATGAGCACTAT---GA 1195
Query 1158 CGAGGCAACAGAGGATAGCTGCAGCCGCAAGCTTGAAGCTGCTGTTTCGAAATGGGATGA 1217
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1196 CGAGGCTACGGAGGATAGCTGCAGCCGCAAGCTCGAAGCTGCTGTTTCGAAATGGGATGA 1255
Query 1218 GACTGATGCTATA---GTCTCTGGTGCCAAGCTTACTGGAACCGAAATACTTGATAAAGA 1274
||||||||||||| |||||||||||||||||||| |||| |||| |||||||||||||
Sbjct 1256 GACTGATGCTATAGTCGTCTCTGGTGCCAAGCTTACGGGAAGCGAAGTACTTGATAAAGA 1315
Query 1275 TGCAGTTaaaaaaaTGTTTGCTGTAGGCACAGCTTCTCTAGGACATGTAGCAGTACTGGA 1334
|||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1316 TGCAGTAAAAAAAATGTTTGCTGTAGGCACAGCTTCTCTAGGACATGTACCAGTGCTGGA 1375
Query 1335 TGTGGGCCGTTTTTCCAGTGAGATTGCTGAAGCTCGTCTAGCACTTTTCCAGAAGCAGGT 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TGTGGGCCGTTTTTCCAGTGAGATTGCTGAAGCTCGTCTAGCACTTTTCCAGAAGCAGGT 1435
Query 1395 TGAGATAACTAAGAAACATCGAAGGGATGCAAACGTTAGGTATGCTTGGCTTCCTGCAAA 1454
|||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1436 TGAGATCACTAAGAAACATCGAGGGGATGCAAACGTTAGGTATGCCTGGCTTCCTGCAAA 1495
Query 1455 GAGGGAAGTTTTATCAGCAGTTATGACGCAAGGACTTGGAGTTGGTGGAGCATTTATTAG 1514
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 1496 GAGGGAAGTTTTATCAGCAGTGATGATGCAAGGACTTGGAGTTGGTGGAGCATTTATCAG 1555
Query 1515 AAAGTCCATCTATGGTGTTGGAATCCATTTAACTGCTGCAGACTGCCCTTACTTCAGTGC 1574
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 1556 AAAGTCCATCTATGGTGTTGGGATCCATTTAACCGCTGCAGACTGCCCTTATTTCAGTGC 1615
Query 1575 TAGATATTGTGATGTTGACGAAAATGGAGTTCGTTACATGGTTTTATGCCGTGTAATAAT 1634
|||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || ||
Sbjct 1616 TAGATACTGTGATGTTGACGAAAACGGAGTACGTTACATGGTTTTATGCCGTGTGATTAT 1675
Query 1635 GGGGAATATGGAGCTTCTTCGTGGTGATAAGGCTCAGTTCTTTTCTGGTGGAGAAGAATA 1694
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1676 GGGGAATATGGAGCTTCTTCGTGGTGATAAAGCTCAGTTCTTTTCTGGTGGAGAAGAATA 1735
Query 1695 TGACAATGGAGTCGATGATATCGAGAGTCCAAAGAATTACATTGTCTGGAACATCAATAT 1754
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1736 TGACAATGGAGTCGATGACATTGAGAGTCCAAAGAATTACATTGTCTGGAACATCAATAT 1795
Query 1755 GAACACCCATATATTCCCGGAATTCGTTGTTAGGTTCAAGCTGTCTAATCTCCCCAATGC 1814
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1796 GAACACACATATATTCCCGGAATTTGTTGTTAGGTTCAAGCTGTCTAATCTCCCCAATGC 1855
Query 1815 TGAAGGTAATTTGATTGCTAAGCGTGATAACTCAGGGGTCACTTTGGAAGGACCTAAGAA 1874
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1856 TGAAGGTAATTTGATTGCTAAGCGTGATAACTCAGGGGTCACTTTGGAAGGACCTAAGGA 1915
Query 1875 TCTTCCTCGTCAGTTGGAGTCAAACCATGGAGCAGGAGGTTCAGGAAGTGCAAACAGTGT 1934
|||||||| ||| |||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1916 TCTTCCTCCTCAATTGGAGTCAAACCAGGGAGCAAGAGGTTCAGGAAGTGCAAACAGTGT 1975
Query 1935 TGGTTCAAGCACTACAAGACCCAAATCTCCATGGATGCCTTTTCCTACTCTGTTTGCAGC 1994
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1976 TGGTTCAAGCACTACAAGACCCAAATCTCCATGGATGCCATTTCCTACTCTGTTTGCAGC 2035
Query 1995 AATCTCACATAAGGTTGCAGAGAACGACATGTCGTTGATCAATGCTGACTACCAACAACT 2054
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2036 AATCTCACATAAGGTTGCAGAGAACGACATGTTGTTGATCAATGCTGACTACCAACAACT 2095
Query 2055 GAGGGATAAGAAGATGACGAGAGCAGAGTTTGTGAGGAAACTGCGGGTGATTGTAGGAGA 2114
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2096 GAGGGATAAGAAGATGACGAGAGCGGAGTTTGTCAGGAAACTGCGGGTGATTGTAGGAGA 2155
Query 2115 TGATCTGCTAAGGTCCACCATAACAACGCTTCAAAACCAGCCAAAGTCGAAGGAGATTCC 2174
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2156 TGATCTGCTAAGGTCCACCATAACAACCCTTCAAAACCAGCCAAAGTCGAAGGAGATTCC 2215
Query 2175 AGGAAGCATCAGAGACCATGAAGAAGGTGCAGGTGGGTTGTT-GTAA-G---ATGATGAT 2229
|||||||||||||||||||||||||||||||||||| |||| |||| | ||||||||
Sbjct 2216 AGGAAGCATCAGAGACCATGAAGAAGGTGCAGGTGGATTGTAAGTAAAGTGGATGATGAT 2275
Query 2230 GA---CGAATATCAAAAGGAAGCTGCTTTCTATCTATCTACCCGCcttttgtggttctcc 2286
|| |||||||||||||||||||||||| |||||||||||| |||||| ||||||||||
Sbjct 2276 GATGACGAATATCAAAAGGAAGCTGCTTTTTATCTATCTACCTGCCTTT-GTGGTTCTCC 2334
Query 2287 ttttgactttttctaattttagacttttggttttgGGTCGGGTCGTTGGTAGAGTTTAAA 2346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2335 TTTTGACTTTTTCTAATTTTAGACTTTTGGTTTTGGGTCGGGTCGTTGGTAGAGTTTAAA 2394
Query 2347 -TGTGTCGACTTTTCTTTCTGTCGTGAAAAATCGTACTATATTATACTATGATTCTACTT 2405
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 2395 ATGTGTCGACTTTTCTTTCTGTCGTGAAAAATCGTACTATATTATA-T--GATTCTACTT 2451
Query 2406 ATTAGTCAATGATGTCGCTGGGTCTTTGtttttttAGCTGCAA--AA--CATTGTTGTGG 2461
| ||||||||||||| ||||||||||||| ||||||||||| || |||||||||||
Sbjct 2452 A---GTCAATGATGTCGTTGGGTCTTTGTTTCTTTAGCTGCAAGCAAAACATTGTTGTGG 2508
Query 2462 AAGTCGTTGAATCTTGACGAAAATTTGGTCGTTGAGTCTATAGCGTGAAACTTCTCTTCA 2521
||||||||||||||||||||||||||||||||| || |||| ||||||||||| ||||||
Sbjct 2509 AAGTCGTTGAATCTTGACGAAAATTTGGTCGTTAAGCCTATCGCGTGAAACTTTTCTTCA 2568
Query 2522 CTATACTTTTTCT 2534
|||||||||||||
Sbjct 2569 CTATACTTTTTCT 2581
Score = 169 bits (91), Expect = 1e-40
Identities = 139/159 (87%), Gaps = 16/159 (10%)
Strand=Plus/Plus
Query 1 AAGCAAATTTTTGGTAAGAGAAAGAGG--AAAAACTCAGGAACCGCCGACTTAAGAGTTT 58
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1 AAGCAAATTTTTGGTTAGAGAAAGAGGAAAAAAACTCAGGAACCGCCGACTTAAGAATTT 60
Query 59 CTTC---ATC-TC-CA--AA-ATCGCCGATTATATATAAATGACTCTTCTTCTTCGATTC 110
|||| ||| || | || |||||||||||||||||||||||||||| |||||
Sbjct 61 CTTCTTCATCATCTCTCCAATATCGCCGATTATATATAAATGACTCTTC------GATTC 114
Query 111 AGTTTCTTCTTCGTCGTCATCGCCGGCTTAGGGTTTTCT 149
||||||||||||||||||||||||||||||||||||||
Sbjct 115 TGTTTCTTCTTCGTCGTCATCGCCGGCTTAGGGTTTTCT 153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125768526101
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5