BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473414
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32240.1 | Symbols: KAN2 | Homeodomain-like superfamily prot... 2305 0.0
AT4G17695.1 | Symbols: KAN3 | Homeodomain-like superfamily prot... 54.7 3e-06
> AT1G32240.1 | Symbols: KAN2 | Homeodomain-like superfamily protein
| chr1:11625700-11630626 REVERSE LENGTH=1620
Length=1620
Score = 2305 bits (1248), Expect = 0.0
Identities = 1455/1548 (94%), Gaps = 42/1548 (3%)
Strand=Plus/Plus
Query 1 TCTCTCTCTATATCTCTCAAAAATCTTTGCAAAATCTGCTTAACCTCAAACAATATAAAC 60
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 12 TCTCCCTCTATATCTCTCAAAAATCTTTGCAAAATCTTCTTAACCTCAAACAATATAAAC 71
Query 61 AACATTCTCAACAAAACCCAGAAATCTCTTCCTCAAATCTTTAATA--C---TC---TTT 112
||||||||||||||||||||||||||||||||||||||| | |||| | || |||
Sbjct 72 AACATTCTCAACAAAACCCAGAAATCTCTTCCTCAAATCCTCAATACCCTTTTCTATTTT 131
Query 113 --T--CT-T----TT--TAAAAAAGGATATCTTTCTCTTATTATCTTCTTTGTCCTAACC 161
| || | || |||||||||||||||||||||| ||||||||||||||||||
Sbjct 132 CCTCCCTATACCCTTAATAAAAAAGGATATCTTTCTCTTTTTATCTTCTTTGTCCTAATT 191
Query 162 CAAAGAAAAACAAGAACTAGGGTTCATCATATCTGGAAACCGACTGAAGAATCTCTTCAA 221
| ||| |||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 192 C-AAG-AAAACAAGAACTAGGGTTCATCATCTGTGGAAACCGACTGAAGAATCTCTTC-- 247
Query 222 GAAGAAGGATAAGAAGTTAAAGGTCTCTTTCATGGAGTTATTTCCTGCCCAGCCCGATTT 281
|| | ||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 248 ----AA-G--AAGAAGTTAAAGGTCTCTTTCATGGAGCTGTTTCCTGCTCAGCCCGATTT 300
Query 282 ATCCTTACAGATAAGTCCACCGAACAGCAAACCATCATCAACATGGCAGAGAAGAAGATC 341
||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 301 ATCCTTACAAATAAGTCCACCAAACAGTAAACCATCATCGACATGGCAGAGAAGAAGATC 360
Query 342 AACAACAGATCAAGAAGATCATGAAGAACTCGATTTAGGGTTTTGGAGAAGAGCTCTTGA 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACAACAGATCAAGAAGATCATGAAGAACTCGATTTAGGGTTTTGGAGAAGAGCTCTTGA 420
Query 402 TTCAAGAACATCTTCTCTCGTCTCTAATTCCAGCTCAAAAACGATCAATCATCCATTCCA 461
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 421 TTCAAGAACATCTTCTCTCGTCTCTAATTCCACCTCAAAAACAATCAATCATCCATTCCA 480
Query 462 AGACCTCTCGCTCTCTaacaactctcatcatcaacaacaacaacatcatcatcatcatcC 521
|||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 481 AGACCTCTCGCTCTCTAACATCTCTCATCATCAACAACAACAACA--A-CATCATCATCC 537
Query 522 TCAGCTTCTCCCTAATTGCAACGGCTCTAACATCTTGACCTCTTTCCAATTTCCGACACA 581
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 538 ACAACTTCTCCCTAATTGCAACAGCTCTAACATCTTGACCTCTTTCCAATTTCCGACACA 597
Query 582 ACAGCAACAACAACACTTACAAGGGTTTCTTGCTCGTGACCTTAATACTCACTTAAGACC 641
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 598 GCAGCAACAACAACACTTACAAGGGTTTCTTGCTCACGACCTTAATACTCACTTAAGACC 657
Query 642 AATAAGAGGAATCCCTCTTTACCACAACCCTCCTCCACATCATCA-CC-----GTCCGCC 695
|||||||||||| || ||||||||||||||||||||||||||||| || |||||||
Sbjct 658 AATAAGAGGAATACCACTTTACCACAACCCTCCTCCACATCATCATCCTCACCGTCCGCC 717
Query 696 ACCACCGTGTTTCCCTTTCGATCCGTCGGCTCTAATTCCCTCTTCCTCCTCTTCCTCGCC 755
||| || |||||||||||||| |||||| ||||||| |||||||||||| ||||||||||
Sbjct 718 ACCGCCATGTTTCCCTTTCGACCCGTCGTCTCTAATACCCTCTTCCTCCACTTCCTCGCC 777
Query 756 GGCTCTTACCGGAAACAACAATAGCTTTAATACAAGTAGCGTTAGTAACCCTAATTACCA 815
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 778 GGCTCTAACCGGAAACAACAATAGCTTTAATACTAGTAGCGTTAGTAACCCTAATTACCA 837
Query 816 CAATCATCATCACCAGACTCTAAACAGAGCCAGATTCATGCCAAGATTCCCAGCTAAGCG 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 838 CAATCATCATCACCAGACTCTAAACAGAGCCAGATTCATGCCAAGATTCCCAGCTAAACG 897
Query 876 AAGCATGAGAGCTCC-ACGGATGCGATGGACCACCACTCTCCATGCCCGGTTCGTTCACG 934
||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||
Sbjct 898 AAGCATGAGAGCTCCTA-GGATGCGATGGACCACCACTCTTCATGCCCGGTTCGTTCACG 956
Query 935 CCGTTGAATTACTCGGTGGCCATGAAAGAGCAACACCCAAATCAGTTCTTGAGCTCATGG 994
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 957 CCGTTGAATTACTCGGTGGCCATGAAAGAGCAACACCTAAATCAGTTCTTGAGCTCATGG 1016
Query 995 ATGTCAAAGATCTAACCTTGGCTCATGTTAAGTCCCATTTACAGATGTACAGAACAGTGA 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 ATGTCAAAGATCTAACCTTGGCTCATGTTAAGTCCCATTTACAGATGTACAGAACAGTGA 1076
Query 1055 AGACAACCGACAAAGCAGCAGCTTCGTCAGGACAATCTGATGTCTATGAAAATGGATCTT 1114
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1077 AGACAACCGACAAAGCAGCAGCTTCGTCAGGACAATCTGATGTCTATGAAAATGGATCAT 1136
Query 1115 CAGGAGATAATAACTCAGACGATTGGATGTTCGATATGAATCGAAAATCTAGAGATAGCG 1174
|||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 1137 CAGGAGATAATAACTCAGACGACTGGATGTTCGATATGAATAGAAAATCGAGAGATAGCG 1196
Query 1175 AGGAATTGACGAATCCTCTAGAGAAATCAAATGGTCTATGGACAAATTCTTCCGGAGAAG 1234
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1197 AGGAATTGACGAATCCTCTAGAGAAATCAAATGGTCTATGGACCAATTCTTCCGGAGAAG 1256
Query 1235 CACGTTTGCATGGGAAGCTAATCGATAATGTTGCAGAAATTATGCTACCTTCTGAGAAGG 1294
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CACGTTTGCATGGGAAGTTAATCGATAATGTTGCAGAAATTATGCTACCTTCTGAGAAGG 1316
Query 1295 AACTAGATGGAAAGTGCTCAAGTTATGAGAGAATATCCTCAGAAGAGATGAGCTCATCAA 1354
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1317 AACTAGATGGAAAGTGCTCAAGTTATGAGAGAATATCATCAGAAGAGATGAGCTCATCAA 1376
Query 1355 GCATCTCGGGAACAAGCCCATTCAAACCAAATCTTGAGTTTACTCTGGGTCGATCTCACT 1414
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1377 GCATCTCGGGAACAAGCCCTTTCAAGCCAAATCTTGAGTTTACTCTGGGTCGATCTCACT 1436
Query 1415 AAATTTATTGTTATAGCTAGCTAGTAATTAATTAGTATCAATTAACTTATATTTTTGGCT 1474
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1437 AAATTTATTGTTGTAGCTAGGTAGTAATTAATTAGTATCAATTAACTTATATTTT-GGCT 1495
Query 1475 AATGACTAGTTTCGATATTCATATCAATTGAATAAGTGtttttttttt 1522
| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1496 ACTGACTAGTTTCGATATTCATATCAATTGAATAAGTTTTTTTTTTTT 1543
> AT4G17695.1 | Symbols: KAN3 | Homeodomain-like superfamily protein
| chr4:9848032-9850704 REVERSE LENGTH=1077
Length=1077
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 637 AGACCAATAAGAGGAATCCCTCTTTACCA 665
|||||||||||||||||||||||||||||
Sbjct 277 AGACCAATAAGAGGAATCCCTCTTTACCA 305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76505630580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5