BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473416
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32260.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1142 0.0
> AT1G32260.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT2G35480.1);
Has 48 Blast hits to 48 proteins in 14 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11640581-11641871
REVERSE LENGTH=875
Length=875
Score = 1142 bits (618), Expect = 0.0
Identities = 790/871 (91%), Gaps = 20/871 (2%)
Strand=Plus/Plus
Query 1 AAAGGTCAGTGACTGACGAAAATGGCGATCATCCGATAACCGTGTAGCCGCCGAAGAAGA 60
|||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||
Sbjct 10 AAAGGTCAGTGACTGACGAAAATGGCGATCATGCGATAATCGTGTAGCCGAAGAAGAAGA 69
Query 61 AG--GTTTTAGAAGGAAGATGGTGTTTTGGGAGATAACTCTAGGAACAGCTTACTTCTTG 118
|| | |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 AGAAGAAGAAGAAAGAAGATGGTGTTTTGGGAGATAACTCTAGGAACAGCTTACTTCTTG 129
Query 119 GGACTGAGACGGACTTATAGGCTCGCCT-TGAAGATCCAGCGTCGGATTGTTAGTCCGAA 177
||||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||
Sbjct 130 GGACTGAGACGGACTTATAGGCTCG-CTCTGAAGATCCAGCGTCGGCTTGTTACTCCGAA 188
Query 178 ACATCCCAAAATCCGTCATTTTCTTCATCGGAGGACTCGTAAAATCTTCGATGTGGCGAT 237
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 189 ACATCCCAAAATCCGTCAATTTCTTCATCGGAGGACTCGTAAAATCTTCGATGTGGCGAT 248
Query 238 TTCGGTTCACAAGAACATACAAGAAAGAGACATAGAAGTTGGTAGGAATCTTGGAAACTG 297
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 249 TTCGGTTCACAAGAACATACAAGAAAGAGACATAGAAGTTGGTAGGAATCTCGGAAATTG 308
Query 298 GATTCTCCGTTGGCTTGATCGGATGAAACCAGCAGCTCAGATACGTACTCGACCAGAGCT 357
|||||| |||||||| ||| ||||||||||||||||||||| |||||||| ||||| ||
Sbjct 309 GATTCTTCGTTGGCTCGATAAGATGAAACCAGCAGCTCAGATCCGTACTCGGCCAGAACT 368
Query 358 ACCACATAACAGCAATTCGAACATGGACAAGGCAAAAAGACTAACGGAATTGTCCCAG-C 416
|||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| | |
Sbjct 369 ACCACACAACAGCAATTCCAACATGGACAAGGCAAAGAGACTAACGGAATTGTCCC-GTC 427
Query 417 CAAAATCGCACACGAACACGACGCAGACTCCTCAAAACCGTGAATCCGGTAGGCAGTTGT 476
| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||
Sbjct 428 CCAAATCGCACACGAACACGACGCAGACTCCACAAAACCGTGAATCCGATAGGCATTTGT 487
Query 477 TCT-CCTCACTGAATCATTTCCGGCACAAGCCATTCCCGTCTGTCTCTATGATGATCCAA 535
| | |||| |||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 T-TACCTCGTTGAAACACTTCCGGCACAAGCCATTCCCGTCTGTCTCTATGATGATCCAA 546
Query 536 CCGCCGAGACCCAGTGGAACTACGACTCAGTACAGACATTAC-A--GTGGCAGTCTAGCC 592
||||||||||||| |||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 547 CCGCCGAGACCCAATGGAACTACGACTCAGTACAGACATTACTACAGTGGCGGTCTAGCA 606
Query 593 GGAAGTGTGATTCAACCGAGCTATGTTACTGGTGGCAGGTTTGATGGTGTAATCAGGAAA 652
| |||| |||||||||||||||||||||| |||||| |||| |||||||| ||||||||
Sbjct 607 GCAAGTCTGATTCAACCGAGCTATGTTACAGGTGGCGGGTTCAATGGTGTAGTCAGGAAA 666
Query 653 GACATTTTGCAGTGGATATCACAGAGATGAAAGATGAAGCAGCAAAATCCCATCTTTCTC 712
||||||||||||||||| |||| ||||||||||||| ||||| || |||||||||||||
Sbjct 667 GACATTTTGCAGTGGATGGCACAAAGATGAAAGATGATGCAGCTAAGTCCCATCTTTCTC 726
Query 713 TCGACATAATTGAGCCTCTCTCTTTT-TT-----AACTTTTAATTGCAGAAACTGGTGTG 766
| |||||||||||||||||||||||| || |||||||||||||||||| | ||||
Sbjct 727 T-GACATAATTGAGCCTCTCTCTTTTCTTTTTTTAACTTTTAATTGCAGAAATTAATGTG 785
Query 767 ATAGTGGATAGATTCGGAAGCAAGTATGTAGAAAACATGACAATGTCTTTTTCTTTTATT 826
|| || ||||||| | ||||||| ||||||| |||||||||||||||||||||||| |
Sbjct 786 ATTGTTGATAGATCCTGAAGCAACTATGTAGTAAACATGACAATGTCTTTTTCTTTC-T- 843
Query 827 AACGCTTAAATAAAGTTTCATTTACATTGAG 857
||||||| ||||||||||||| ||| |||||
Sbjct 844 AACGCTTGAATAAAGTTTCATATACTTTGAG 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41794810304
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5