BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473420 Length=1708 Score E Sequences producing significant alignments: (Bits) Value AT1G32330.1 | Symbols: ATHSFA1D, HSFA1D | heat shock transcript... 2313 0.0 > AT1G32330.1 | Symbols: ATHSFA1D, HSFA1D | heat shock transcription factor A1D | chr1:11656986-11660376 REVERSE LENGTH=1879 Length=1879 Score = 2313 bits (1252), Expect = 0.0 Identities = 1525/1650 (92%), Gaps = 45/1650 (3%) Strand=Plus/Plus Query 42 TATATGAAACCCTAGTTTTCTCAAAA-TCCCAAATATTTTGACTTGGAAACaaaaaaaTC 100 ||||| |||||||| ||||||||||| ||||||||| ||||||||||| | ||||||| Sbjct 84 TATATAAAACCCTAATTTTCTCAAAATTCCCAAATA--TTGACTTGGAATC--AAAAATC 139 Query 101 CGAATGGATGGTGTAACCAGCAAAGTAACCACCAGCGACGGTGGTGGAGAATCAATGGAG 160 ||||||||| ||| |||||||||||||| |||||||| || ||||| ||||||||| Sbjct 140 CGAATGGAT-GTG-----AGCAAAGTAACCACAAGCGACGGCGGAGGAGATTCAATGGAG 193 Query 161 ATTAAGCCATCTCCTCAACCACAGCCCGCGGCGATTTTAAGTTCAAACGCGCCTCCTCCG 220 | |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| Sbjct 194 ACTAAGCCATCTCCTCAACCTCAGCCTGCGGCGATTCTAAGTTCAAACGCGCCTCCTCCG 253 Query 221 TTTCTGAGCAAGACCTATGACATGGTTGATGATC-CAGCTACCGATTCGATTGTTTCTTG 279 |||||||||||||||||||| ||||||||||||| || ||| ||||||||||| ||||| Sbjct 254 TTTCTGAGCAAGACCTATGATATGGTTGATGATCACA-ATACAGATTCGATTGTCTCTTG 312 Query 280 GAGTGATACTAACAACAGTTTTATCGTTTGGGATCCACCTGAGTTCGCTCGAGATCTTCT 339 ||||| || |||||||||||||||||||||| | ||||| ||||||||||| |||||||| Sbjct 313 GAGTGCTAATAACAACAGTTTTATCGTTTGGAAACCACCGGAGTTCGCTCGCGATCTTCT 372 Query 340 TCCTAAGAACTTTAAGCATAACAATTTCTCCAGCTTCGTTAGACAGCTAAATACCTATGG 399 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 373 TCCTAAGAACTTTAAGCATAATAATTTCTCCAGCTTCGTTAGACAGCTTAATACCTATGG 432 Query 400 TTTCCGGAAGGTTGACCCAGATAGATGGGAATTTGCGAATGAAGGTTTCTTAAGAGGTCA 459 |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 433 TTTCAGGAAGGTTGACCCAGATAGATGGGAATTTGCGAATGAAGGTTTTTTAAGAGGTCA 492 Query 460 GAAGCACTTGCTTA-AAACAATAACTAGGCGAAAACCTGCCCAGGGACATGGACATGGAC 518 ||||||||||| || || ||||||||||||||||||||||||| ||||| ||||| |||| Sbjct 493 GAAGCACTTGC-TACAATCAATAACTAGGCGAAAACCTGCCCATGGACAGGGACAGGGAC 551 Query 519 ATCCGCAATCTCAGAACTCGAATGGACAGAACTCATCTGTTAGTGCATGTGTTGAAGTTG 578 ||| || ||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 552 ATCAGCGATCTCAGCACTCGAATGGACAGAACTCATCTGTTAGCGCATGTGTTGAAGTTG 611 Query 579 GCAAATTTGGTCTTGAAGAAGAAGTTGAAAGGCTTAAAAGAGATAAGAACGTCCTTATGC 638 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 612 GCAAATTTGGTCTCGAAGAAGAAGTTGAAAGGCTTAAAAGAGATAAGAACGTCCTTATGC 671 Query 639 AAGAACTCGTCAGATTAAGACAGCAGCAACAGTCCACTGATAACCAACTTCAAACGATGG 698 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 672 AAGAACTCGTCAGATTAAGACAGCAGCAACAGTCCACTGATAACCAACTTCAAACGATGG 731 Query 699 TTCAGCGTCTCCAGGGCATGGAGAATCGGCAACAACAATTAATGTCATTCCTTGCAAAGG 758 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 732 TTCAGCGTCTCCAGGGCATGGAGAATCGGCAACAACAATTAATGTCATTCCTTGCAAAGG 791 Query 759 CAGTACAAAGCCCTCATTTTCTATCTCAATTCTTACAGCAGCAGAATCAGCAAAACGAGA 818 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 792 CAGTACAAAGCCCTCATTTTCTATCTCAATTCTTACAGCAGCAGAATCAGCAAAACGAGA 851 Query 819 G-----G-CGCATCAGTGATACCAATAAGAAGCGGAGATTCAAGCGAGACGGCATTGTCC 872 | | |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 852 GTAATAGGCGCATCAGTGATACCAGTAAGAAGCGGAGATTCAAGCGAGACGGCATTGTCC 911 Query 873 GTAATAATGATTCTGCTTCTCCTGATGGACAGATAGTGAAGTATCAACCTCCAATGCACG 932 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 912 GTAATAATGATTCTGCTACTCCTGATGGACAGATAGTGAAGTATCAACCTCCAATGCACG 971 Query 933 AGCAAGCCAAAGCAATGTTTAAACAGCTTATGAAGATGGAACCTTACAAAACTGGCGATG 992 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 972 AGCAAGCCAAAGCAATGTTTAAACAGCTTATGAAGATGGAACCTTACAAAACCGGCGATG 1031 Query 993 ATGGTTTCCTTCTAGGTAATGGTACTTCTACTACCGAGGGAACAGAGATGGAGACTTCAT 1052 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1032 ATGGTTTCCTTCTAGGTAATGGTACGTCTACTACCGAGGGAACAGAGATGGAGACTTCAT 1091 Query 1053 CAAACCACGCCTCGGGTATAACTCTTCAGGAAATGCCAACAGCTTCTGAGATACAGTCAT 1112 ||||||| | ||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 1092 CAAACCAAGTATCGGGTATAACTCTTAAGGAAATGCCTACAGCTTCTGAGATACAGTCAT 1151 Query 1113 CATCACCATCAATTGGAACAACTCCTGAAAATGTTTCAGCAGTACCAGAAGCAACCGAGA 1172 |||||||| | ||| ||||||||||||||||||||| |||| | ||||||||||||||| Sbjct 1152 CATCACCA--A-TTGAAACAACTCCTGAAAATGTTTCGGCAGCATCAGAAGCAACCGAGA 1208 Query 1173 ACTGTATTCCTTCACCTGATGATCTAACTCTTCCCGAATTCACTCATATGCTACCGGAAA 1232 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1209 ACTGTATTCCTTCACCTGATGATCTAACTCTTCCCGACTTCACTCATATGCTACCGGAAA 1268 Query 1233 ATAACGCAGAGAAGCCTCCAGAGAATTTCATGGAACCAAATATGGGAGGTTCTAGTCCAT 1292 |||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 1269 ATAATTCAGAGAAGCCTCCAGAGAGTTTCATGGAACCAAACCTGGGAGGTTCTAGTCCAT 1328 Query 1293 TACTAGACCCAGATCTGTTGATC-A--A--CTTTGACAT-C-A-A----CGACTTTCCAA 1340 ||||||| ||||||||||||||| | | ||||| | | | | | ||||||||||| Sbjct 1329 TACTAGATCCAGATCTGTTGATCGATGATTCTTTGTCCTTCGACATTGACGACTTTCCAA 1388 Query 1341 TGGACCCTGATATGGGCCCTGTTGATTACAAATTACTCGAA-GACTTACTCATGTCAAGC 1399 |||| ||||||| | ||||||||||||| ||||||||| | |||||||||||||||| Sbjct 1389 TGGATTCTGATATAGACCCTGTTGATTACGGTTTACTCGAACG-CTTACTCATGTCAAGC 1447 Query 1400 CCGGTTCCAGATAATATGGATTTCA-CACCAGTGGACAATGAGACAGAGCAGAAACAAAA 1458 |||||||||||||||||||||| || |||||||||||||||| ||||||||| ||||||| Sbjct 1448 CCGGTTCCAGATAATATGGATT-CAACACCAGTGGACAATGAAACAGAGCAGGAACAAAA 1506 Query 1459 TGGATGGGACAAAACTAAACAGATGGATAATCTGACTCAACAGATGGGTCTCCTCTCGCC 1518 |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || Sbjct 1507 TGGATGGGACAAAACTAAGCATATGGATAATCTGACTCAACAGATGGGTCTCCTCTCTCC 1566 Query 1519 TGAAACCATAGATCTCTCAAGGCAAAATCCTTGATTTTGGGAGTTTTAAAAGTCTTTTGA 1578 ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1567 TGAAACCTTAGATCTCTCAAGGCAAAATCCTTGATTTTGGGAGTTTTTAAAGTCTTTTGA 1626 Query 1579 GGTAACAGAAGTCCCTGAGAGATCAGCATATTCATTT--CACGCACTGATCATTTCTTTC 1636 ||||||| | ||||||||||| |||||||||||||| || | |||||| ||| |||| Sbjct 1627 GGTAACACA-GTCCCTGAGAG--CAGCATATTCATTTTTCATACGCTGATCTTTTATTTC 1683 Query 1637 TTCTTTCTTATATCAAACTTGTATAACATT 1666 ||||||||| ||||||| | || ||||||| Sbjct 1684 TTCTTTCTTGTATCAAAGTGGTTTAACATT 1713 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84437316690 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5