BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473420
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32330.1 | Symbols: ATHSFA1D, HSFA1D | heat shock transcript... 2313 0.0
> AT1G32330.1 | Symbols: ATHSFA1D, HSFA1D | heat shock transcription
factor A1D | chr1:11656986-11660376 REVERSE LENGTH=1879
Length=1879
Score = 2313 bits (1252), Expect = 0.0
Identities = 1525/1650 (92%), Gaps = 45/1650 (3%)
Strand=Plus/Plus
Query 42 TATATGAAACCCTAGTTTTCTCAAAA-TCCCAAATATTTTGACTTGGAAACaaaaaaaTC 100
||||| |||||||| ||||||||||| ||||||||| ||||||||||| | |||||||
Sbjct 84 TATATAAAACCCTAATTTTCTCAAAATTCCCAAATA--TTGACTTGGAATC--AAAAATC 139
Query 101 CGAATGGATGGTGTAACCAGCAAAGTAACCACCAGCGACGGTGGTGGAGAATCAATGGAG 160
||||||||| ||| |||||||||||||| |||||||| || ||||| |||||||||
Sbjct 140 CGAATGGAT-GTG-----AGCAAAGTAACCACAAGCGACGGCGGAGGAGATTCAATGGAG 193
Query 161 ATTAAGCCATCTCCTCAACCACAGCCCGCGGCGATTTTAAGTTCAAACGCGCCTCCTCCG 220
| |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct 194 ACTAAGCCATCTCCTCAACCTCAGCCTGCGGCGATTCTAAGTTCAAACGCGCCTCCTCCG 253
Query 221 TTTCTGAGCAAGACCTATGACATGGTTGATGATC-CAGCTACCGATTCGATTGTTTCTTG 279
|||||||||||||||||||| ||||||||||||| || ||| ||||||||||| |||||
Sbjct 254 TTTCTGAGCAAGACCTATGATATGGTTGATGATCACA-ATACAGATTCGATTGTCTCTTG 312
Query 280 GAGTGATACTAACAACAGTTTTATCGTTTGGGATCCACCTGAGTTCGCTCGAGATCTTCT 339
||||| || |||||||||||||||||||||| | ||||| ||||||||||| ||||||||
Sbjct 313 GAGTGCTAATAACAACAGTTTTATCGTTTGGAAACCACCGGAGTTCGCTCGCGATCTTCT 372
Query 340 TCCTAAGAACTTTAAGCATAACAATTTCTCCAGCTTCGTTAGACAGCTAAATACCTATGG 399
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 373 TCCTAAGAACTTTAAGCATAATAATTTCTCCAGCTTCGTTAGACAGCTTAATACCTATGG 432
Query 400 TTTCCGGAAGGTTGACCCAGATAGATGGGAATTTGCGAATGAAGGTTTCTTAAGAGGTCA 459
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 433 TTTCAGGAAGGTTGACCCAGATAGATGGGAATTTGCGAATGAAGGTTTTTTAAGAGGTCA 492
Query 460 GAAGCACTTGCTTA-AAACAATAACTAGGCGAAAACCTGCCCAGGGACATGGACATGGAC 518
||||||||||| || || ||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 493 GAAGCACTTGC-TACAATCAATAACTAGGCGAAAACCTGCCCATGGACAGGGACAGGGAC 551
Query 519 ATCCGCAATCTCAGAACTCGAATGGACAGAACTCATCTGTTAGTGCATGTGTTGAAGTTG 578
||| || ||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 552 ATCAGCGATCTCAGCACTCGAATGGACAGAACTCATCTGTTAGCGCATGTGTTGAAGTTG 611
Query 579 GCAAATTTGGTCTTGAAGAAGAAGTTGAAAGGCTTAAAAGAGATAAGAACGTCCTTATGC 638
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 GCAAATTTGGTCTCGAAGAAGAAGTTGAAAGGCTTAAAAGAGATAAGAACGTCCTTATGC 671
Query 639 AAGAACTCGTCAGATTAAGACAGCAGCAACAGTCCACTGATAACCAACTTCAAACGATGG 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 AAGAACTCGTCAGATTAAGACAGCAGCAACAGTCCACTGATAACCAACTTCAAACGATGG 731
Query 699 TTCAGCGTCTCCAGGGCATGGAGAATCGGCAACAACAATTAATGTCATTCCTTGCAAAGG 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TTCAGCGTCTCCAGGGCATGGAGAATCGGCAACAACAATTAATGTCATTCCTTGCAAAGG 791
Query 759 CAGTACAAAGCCCTCATTTTCTATCTCAATTCTTACAGCAGCAGAATCAGCAAAACGAGA 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 CAGTACAAAGCCCTCATTTTCTATCTCAATTCTTACAGCAGCAGAATCAGCAAAACGAGA 851
Query 819 G-----G-CGCATCAGTGATACCAATAAGAAGCGGAGATTCAAGCGAGACGGCATTGTCC 872
| | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 852 GTAATAGGCGCATCAGTGATACCAGTAAGAAGCGGAGATTCAAGCGAGACGGCATTGTCC 911
Query 873 GTAATAATGATTCTGCTTCTCCTGATGGACAGATAGTGAAGTATCAACCTCCAATGCACG 932
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 GTAATAATGATTCTGCTACTCCTGATGGACAGATAGTGAAGTATCAACCTCCAATGCACG 971
Query 933 AGCAAGCCAAAGCAATGTTTAAACAGCTTATGAAGATGGAACCTTACAAAACTGGCGATG 992
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 972 AGCAAGCCAAAGCAATGTTTAAACAGCTTATGAAGATGGAACCTTACAAAACCGGCGATG 1031
Query 993 ATGGTTTCCTTCTAGGTAATGGTACTTCTACTACCGAGGGAACAGAGATGGAGACTTCAT 1052
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1032 ATGGTTTCCTTCTAGGTAATGGTACGTCTACTACCGAGGGAACAGAGATGGAGACTTCAT 1091
Query 1053 CAAACCACGCCTCGGGTATAACTCTTCAGGAAATGCCAACAGCTTCTGAGATACAGTCAT 1112
||||||| | ||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1092 CAAACCAAGTATCGGGTATAACTCTTAAGGAAATGCCTACAGCTTCTGAGATACAGTCAT 1151
Query 1113 CATCACCATCAATTGGAACAACTCCTGAAAATGTTTCAGCAGTACCAGAAGCAACCGAGA 1172
|||||||| | ||| ||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 1152 CATCACCA--A-TTGAAACAACTCCTGAAAATGTTTCGGCAGCATCAGAAGCAACCGAGA 1208
Query 1173 ACTGTATTCCTTCACCTGATGATCTAACTCTTCCCGAATTCACTCATATGCTACCGGAAA 1232
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1209 ACTGTATTCCTTCACCTGATGATCTAACTCTTCCCGACTTCACTCATATGCTACCGGAAA 1268
Query 1233 ATAACGCAGAGAAGCCTCCAGAGAATTTCATGGAACCAAATATGGGAGGTTCTAGTCCAT 1292
|||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1269 ATAATTCAGAGAAGCCTCCAGAGAGTTTCATGGAACCAAACCTGGGAGGTTCTAGTCCAT 1328
Query 1293 TACTAGACCCAGATCTGTTGATC-A--A--CTTTGACAT-C-A-A----CGACTTTCCAA 1340
||||||| ||||||||||||||| | | ||||| | | | | | |||||||||||
Sbjct 1329 TACTAGATCCAGATCTGTTGATCGATGATTCTTTGTCCTTCGACATTGACGACTTTCCAA 1388
Query 1341 TGGACCCTGATATGGGCCCTGTTGATTACAAATTACTCGAA-GACTTACTCATGTCAAGC 1399
|||| ||||||| | ||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 1389 TGGATTCTGATATAGACCCTGTTGATTACGGTTTACTCGAACG-CTTACTCATGTCAAGC 1447
Query 1400 CCGGTTCCAGATAATATGGATTTCA-CACCAGTGGACAATGAGACAGAGCAGAAACAAAA 1458
|||||||||||||||||||||| || |||||||||||||||| ||||||||| |||||||
Sbjct 1448 CCGGTTCCAGATAATATGGATT-CAACACCAGTGGACAATGAAACAGAGCAGGAACAAAA 1506
Query 1459 TGGATGGGACAAAACTAAACAGATGGATAATCTGACTCAACAGATGGGTCTCCTCTCGCC 1518
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 1507 TGGATGGGACAAAACTAAGCATATGGATAATCTGACTCAACAGATGGGTCTCCTCTCTCC 1566
Query 1519 TGAAACCATAGATCTCTCAAGGCAAAATCCTTGATTTTGGGAGTTTTAAAAGTCTTTTGA 1578
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1567 TGAAACCTTAGATCTCTCAAGGCAAAATCCTTGATTTTGGGAGTTTTTAAAGTCTTTTGA 1626
Query 1579 GGTAACAGAAGTCCCTGAGAGATCAGCATATTCATTT--CACGCACTGATCATTTCTTTC 1636
||||||| | ||||||||||| |||||||||||||| || | |||||| ||| ||||
Sbjct 1627 GGTAACACA-GTCCCTGAGAG--CAGCATATTCATTTTTCATACGCTGATCTTTTATTTC 1683
Query 1637 TTCTTTCTTATATCAAACTTGTATAACATT 1666
||||||||| ||||||| | || |||||||
Sbjct 1684 TTCTTTCTTGTATCAAAGTGGTTTAACATT 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84437316690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5