BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473425
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32361.1 | Symbols: ATL1F | RING/U-box superfamily protein |... 1661 0.0
> AT1G32361.1 | Symbols: ATL1F | RING/U-box superfamily protein
| chr1:11675531-11676748 FORWARD LENGTH=1218
Length=1218
Score = 1661 bits (899), Expect = 0.0
Identities = 972/1006 (97%), Gaps = 9/1006 (1%)
Strand=Plus/Plus
Query 1 ATGTATGACCTTACCTTTCTCCTCATTTCTCTCTTCCCCACTGACATTACCCTTCCCACA 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGTATGACCTTACCTTTCTCCTCATTTCTCTCTTCCCCATTGACATTACCCTTCCCACA 60
Query 61 CGGCAACCTCAGAATAAACCCTTTCTTCTTCCTCAAGCTACCTATGAAACCAGTCACAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGGCAACCTCAGAATAAACCCTTTCTTCTTCCTCAAGCTACCTATGAAACCAGTCACAAT 120
Query 121 ATTTCTGATCCGACCGTTTCACTACACGGTCTCAAAATGTCTTTATCCACGACCGAGACA 180
|||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 121 ATTTCTGATCCGGCCGTTTCACTGCACGGTCTCAAAATGTCTATATCCACGACCGAGACA 180
Query 181 GACAATTTCAAACCAGTACACACCCTCGTTTCCTCCCCGGTCACCATAGTTTTGACCGGT 240
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GACAATTTCAAACCAGTCCATACCCTCGTTTCCTCCCCGGTCACCATAGTCTTGACCGGT 240
Query 241 AGTCTTCTCTTCATCATTTTCACCGGTTTCTTCTCCTTCTTCTTCTGTGGATGTTTATTT 300
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 241 AGTCTTCTCTTCATCATTTTCACGGGGTTCTTCTCCTTCTTCTTCTGTGGATGTTTATTT 300
Query 301 AGGAAACTCATGAAGATTTGGAATAACCATCGAAACCGAAACCGAAACCGTCCTAGTAAC 360
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 AGGAAACTCATGAGGATTTGGAATAACCAT------CGAAACCGAAACCGTCCTAGTAAC 354
Query 361 CTAATCCAACCGTCTAATCCACCCGAAAACCTCGGTCTCGACTCCAAGATCATTGAATCC 420
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 355 CTAATCCAACCGTCTAATCCACCTGAAAACCTCGGTCTCGACTCCAAGATCATTGAATCA 414
Query 421 TTCCCTGAGTATCCGTATTCGGTGAAAGATCATGGGACGGATCAATGTTCCATTTGTTTA 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TTCCCTGAGTATCCTTATTCGGTGAAAGATCATGGGACGGATCAATGTTCCATTTGTTTA 474
Query 481 ACAGAGTTTATGGATGATGACACCATTAGGCTCATTTCTACTTGTAATCACTCCTTCCAC 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 475 ACAGAGTTTATGGATGATGACACTATTAGGCTCATTTCTACTTGTAATCACTCCTTCCAC 534
Query 541 ACAATTTGCATTGATCTTTGGTTTGAAGGACACAAGACTTGCCCGGTATGCAGGCGTGAG 600
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 535 ACGATTTGCATTGATCTTTGGTTTGAAGGACACAAGACTTGCCCTGTATGCAGGCGTGAG 594
Query 601 CTTGATGTAGAAGACCGGACATCGCTAGAAAAGCCGATAGAAGCTCCTGAAATCGATCTA 660
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 595 CTTGATGTAGAAGACCGGACATCGCTAGAAAAGCCGCTAGAAGTTCCTGAAATCGATCTA 654
Query 661 GTTAGATCTGAAATCCACGACGAGCCTTTGCCCCGTGACACATTGACAATCATCGTTCAC 720
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 655 GTTAGATCTGAAATCCACGACGAGCCTTTGCCCCGTGACACAGTGACAATCATCGTTCAC 714
Query 721 GAGGAGCATCCTACTACTACTATTGGTAGTTTAGAGCATACAGATGAAATCGAAAGCTAT 780
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GAGGAGCATCCTAGTACTACTATTGGTAGTTTAGAGCATACAGATGAAATCGAAAGCTAT 774
Query 781 GAAAGACGAATGAAAGCATCGAATTTACGGTTTTGGAGGTCGCATTCTACTGGACATTCT 840
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 775 GAAAGACGAATGAAAGCATCGAATTTGCGGTTTTGGAGGTCACATTCTACTGGACACTCT 834
Query 841 ATAGTAGTTAAGACCGAAAACGAAC---aagaagaagaagaagaagaaaaagaTGAGATT 897
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 835 ATAGTAGTTAAGACCGAAAACGAACAAGAAGAAGAAGAAGAAGAAGAAAAAGATGAGATT 894
Query 898 AAGATACATATTGAGATTTCTGGAGAATGTCAGTTTGAAGATCACAAGATGACTTTACCA 957
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AAGATACGTATTGAGATCTCTGGAGAATGTCAGTTTGAAGATCACAAGATGACTTTACCA 954
Query 958 AACAGAAAGTTGTATTGCGTTAGGGGAACTTACTCTGTAGGATAGA 1003
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AACAGAAAGTTGTATTGCGTTAGGGGAACTTACTCTGTAGGATAGA 1000
Score = 206 bits (111), Expect = 5e-52
Identities = 152/170 (89%), Gaps = 10/170 (6%)
Strand=Plus/Plus
Query 1003 AAGACCGGAATTAGATTCTA-GTTTCTGATATATTCTTTGTTTCAGCTG-TCCAATTTTG 1060
|||||||||||||||||||| |||| |||||||||||||||||| || | |||| |||||
Sbjct 1050 AAGACCGGAATTAGATTCTAGGTTT-TGATATATTCTTTGTTTCGGCCGTTCCATTTTTG 1108
Query 1061 TAATTGTTTGATACTATA-G-----GTTATACATATAGAAGATGTTGAAGATTGTTGTAA 1114
||||| ||||| |||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1109 TAATTTTTTGACACTATAGGTTATAGTTATACATATAGAAGATGTTGAAGATTGTTGTAA 1168
Query 1115 TATTTGTACTTAAATTCTCATTATTCCAATACAAATCATACTTTCCTTTT 1164
| |||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 1169 TGTTTGTACTTAAATTCTCATTATTC-AGTACCAATCATACTTTCCTTTT 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57128220210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5