BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473425 Length=1164 Score E Sequences producing significant alignments: (Bits) Value AT1G32361.1 | Symbols: ATL1F | RING/U-box superfamily protein |... 1661 0.0 > AT1G32361.1 | Symbols: ATL1F | RING/U-box superfamily protein | chr1:11675531-11676748 FORWARD LENGTH=1218 Length=1218 Score = 1661 bits (899), Expect = 0.0 Identities = 972/1006 (97%), Gaps = 9/1006 (1%) Strand=Plus/Plus Query 1 ATGTATGACCTTACCTTTCTCCTCATTTCTCTCTTCCCCACTGACATTACCCTTCCCACA 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1 ATGTATGACCTTACCTTTCTCCTCATTTCTCTCTTCCCCATTGACATTACCCTTCCCACA 60 Query 61 CGGCAACCTCAGAATAAACCCTTTCTTCTTCCTCAAGCTACCTATGAAACCAGTCACAAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CGGCAACCTCAGAATAAACCCTTTCTTCTTCCTCAAGCTACCTATGAAACCAGTCACAAT 120 Query 121 ATTTCTGATCCGACCGTTTCACTACACGGTCTCAAAATGTCTTTATCCACGACCGAGACA 180 |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 121 ATTTCTGATCCGGCCGTTTCACTGCACGGTCTCAAAATGTCTATATCCACGACCGAGACA 180 Query 181 GACAATTTCAAACCAGTACACACCCTCGTTTCCTCCCCGGTCACCATAGTTTTGACCGGT 240 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct 181 GACAATTTCAAACCAGTCCATACCCTCGTTTCCTCCCCGGTCACCATAGTCTTGACCGGT 240 Query 241 AGTCTTCTCTTCATCATTTTCACCGGTTTCTTCTCCTTCTTCTTCTGTGGATGTTTATTT 300 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 241 AGTCTTCTCTTCATCATTTTCACGGGGTTCTTCTCCTTCTTCTTCTGTGGATGTTTATTT 300 Query 301 AGGAAACTCATGAAGATTTGGAATAACCATCGAAACCGAAACCGAAACCGTCCTAGTAAC 360 ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 301 AGGAAACTCATGAGGATTTGGAATAACCAT------CGAAACCGAAACCGTCCTAGTAAC 354 Query 361 CTAATCCAACCGTCTAATCCACCCGAAAACCTCGGTCTCGACTCCAAGATCATTGAATCC 420 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 355 CTAATCCAACCGTCTAATCCACCTGAAAACCTCGGTCTCGACTCCAAGATCATTGAATCA 414 Query 421 TTCCCTGAGTATCCGTATTCGGTGAAAGATCATGGGACGGATCAATGTTCCATTTGTTTA 480 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 TTCCCTGAGTATCCTTATTCGGTGAAAGATCATGGGACGGATCAATGTTCCATTTGTTTA 474 Query 481 ACAGAGTTTATGGATGATGACACCATTAGGCTCATTTCTACTTGTAATCACTCCTTCCAC 540 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 475 ACAGAGTTTATGGATGATGACACTATTAGGCTCATTTCTACTTGTAATCACTCCTTCCAC 534 Query 541 ACAATTTGCATTGATCTTTGGTTTGAAGGACACAAGACTTGCCCGGTATGCAGGCGTGAG 600 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 535 ACGATTTGCATTGATCTTTGGTTTGAAGGACACAAGACTTGCCCTGTATGCAGGCGTGAG 594 Query 601 CTTGATGTAGAAGACCGGACATCGCTAGAAAAGCCGATAGAAGCTCCTGAAATCGATCTA 660 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 595 CTTGATGTAGAAGACCGGACATCGCTAGAAAAGCCGCTAGAAGTTCCTGAAATCGATCTA 654 Query 661 GTTAGATCTGAAATCCACGACGAGCCTTTGCCCCGTGACACATTGACAATCATCGTTCAC 720 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 655 GTTAGATCTGAAATCCACGACGAGCCTTTGCCCCGTGACACAGTGACAATCATCGTTCAC 714 Query 721 GAGGAGCATCCTACTACTACTATTGGTAGTTTAGAGCATACAGATGAAATCGAAAGCTAT 780 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 715 GAGGAGCATCCTAGTACTACTATTGGTAGTTTAGAGCATACAGATGAAATCGAAAGCTAT 774 Query 781 GAAAGACGAATGAAAGCATCGAATTTACGGTTTTGGAGGTCGCATTCTACTGGACATTCT 840 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct 775 GAAAGACGAATGAAAGCATCGAATTTGCGGTTTTGGAGGTCACATTCTACTGGACACTCT 834 Query 841 ATAGTAGTTAAGACCGAAAACGAAC---aagaagaagaagaagaagaaaaagaTGAGATT 897 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 835 ATAGTAGTTAAGACCGAAAACGAACAAGAAGAAGAAGAAGAAGAAGAAAAAGATGAGATT 894 Query 898 AAGATACATATTGAGATTTCTGGAGAATGTCAGTTTGAAGATCACAAGATGACTTTACCA 957 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 895 AAGATACGTATTGAGATCTCTGGAGAATGTCAGTTTGAAGATCACAAGATGACTTTACCA 954 Query 958 AACAGAAAGTTGTATTGCGTTAGGGGAACTTACTCTGTAGGATAGA 1003 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 955 AACAGAAAGTTGTATTGCGTTAGGGGAACTTACTCTGTAGGATAGA 1000 Score = 206 bits (111), Expect = 5e-52 Identities = 152/170 (89%), Gaps = 10/170 (6%) Strand=Plus/Plus Query 1003 AAGACCGGAATTAGATTCTA-GTTTCTGATATATTCTTTGTTTCAGCTG-TCCAATTTTG 1060 |||||||||||||||||||| |||| |||||||||||||||||| || | |||| ||||| Sbjct 1050 AAGACCGGAATTAGATTCTAGGTTT-TGATATATTCTTTGTTTCGGCCGTTCCATTTTTG 1108 Query 1061 TAATTGTTTGATACTATA-G-----GTTATACATATAGAAGATGTTGAAGATTGTTGTAA 1114 ||||| ||||| |||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1109 TAATTTTTTGACACTATAGGTTATAGTTATACATATAGAAGATGTTGAAGATTGTTGTAA 1168 Query 1115 TATTTGTACTTAAATTCTCATTATTCCAATACAAATCATACTTTCCTTTT 1164 | |||||||||||||||||||||||| | ||| ||||||||||||||||| Sbjct 1169 TGTTTGTACTTAAATTCTCATTATTC-AGTACCAATCATACTTTCCTTTT 1217 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57128220210 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5