BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473428
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32400.1 | Symbols: TOM2A | tobamovirus multiplication 2A | ... 1775 0.0
> AT1G32400.1 | Symbols: TOM2A | tobamovirus multiplication 2A
| chr1:11689106-11691531 REVERSE LENGTH=1379
Length=1379
Score = 1775 bits (961), Expect = 0.0
Identities = 1085/1143 (95%), Gaps = 15/1143 (1%)
Strand=Plus/Plus
Query 103 TAAGTCGTG---ACAAATAAGAGATGACTTTTAGAGGTTGTTTGGAGTGTTTGTTGAAGT 159
||||||||| ||||| || ||||| ||| |||||||||||||||||||||||||||||
Sbjct 227 TAAGTCGTGAAAACAAAAAAAAGATGGCTTGTAGAGGTTGTTTGGAGTGTTTGTTGAAGT 286
Query 160 TACTCAACTTTCTGCTGGCTGTTGTTGGACTTGGCATGATTGGTTATGGTATCTACTTAT 219
||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 287 TACTCAACTTTCTCCTGGCTGTTGCTGGACTTGGCATGATTGGTTATGGTATCTATTTAT 346
Query 220 TTGTTGAGTACAAGAGAGTTACCGATAATTCTGTTACATTCGATTTGACAAATGGCGATC 279
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 347 TCGTTGAGTACAAGAGAGTTACCGATAATTCTGTTACATTCGATTTGACTAATGGAGATC 406
Query 280 AAAGTTACGTTTCGTTTGGGAGGCCT-TTGCTTATGGCTGTGTCACTGTCTTCTAATGTC 338
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||
Sbjct 407 AAAGTTACGTTTCGTTTGGGAGGCCTATT-CTTATGGCTGTGTCACTGTCTTCTAATATC 465
Query 339 TTTGACAATCTTCCCAAAGCCTGGTTCATATACTTGTTCATTGGTATCGGTGTGGCTCTC 398
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 466 TTTGACAATCTTCCCAAAGCGTGGTTCATATACTTGTTCATTGGTATTGGTGTGGCTCTC 525
Query 399 TTTGTTATTTCTTGCTGTGGCTGCGTTGGTACTTGTTCGAGGAGTGTCTGCTGCTTATCT 458
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 526 TTTGTTATTTCTTGCTGTGGCTGTGTTGGTACTTGTTCGAGGAGTGTCTGCTGCTTATCT 585
Query 459 TGTTACTCTCTCCTTCTGATCTTGTTGATCTTGGTGGAGCTTGGATTCGCAGCATTTATT 518
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 TGCTACTCTCTTCTTCTGATCTTGTTGATCTTGGTGGAGCTTGGATTCGCAGCATTTATT 645
Query 519 TTCTTCGATCACAGCTGGAGAGATGAACTTCCTTCTGACAGGACTGGAAACTTCGATACA 578
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 TTCTTCGATAACAGCTGGAGAGATGAACTTCCTTCTGACAGGACTGGAAACTTCGATACG 705
Query 579 ATATATAATTTCCTGAGAGAGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTT 638
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 ATATATAATTTCCTTAGAGAGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTT 765
Query 639 GTTTTCGAGGCTTTACTCTTTTTGCTTGCCCTTATGGTTAGGGCAGCTAATACACCACCA 698
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 766 GTTTTCGAGGCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAGCTAATACACCAGCA 825
Query 699 GAGTATGACAGTGATGATGAATATATAGCTCCAAGGCAACAAATCAGGCAGCCATTCATC 758
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 826 GAGTATGACAGTGATGATGAATATCTTGCTCCAAGGCAACAAATCAGGCAGCCATTCATC 885
Query 759 AACCGCCAAGCCGCCCCTGTCACTGGTGTCCCAGTTGCTCCTACTTTGGACCAACGCCCA 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 AACCGCCAAGCCGCCCCTGTCACTGGTGTCCCAGTTGCTCCTACTTTGGACCAACGCCCA 945
Query 819 AGCCGCAATGACCCTTGGAGTGCACGTATGAGGGAAAAGTATGGGCTTGACACATCTGAG 878
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 AGCCGCAGTGACCCTTGGAGTGCACGTATGAGGGAAAAGTATGGGCTTGACACATCTGAG 1005
Query 879 TTCACATACAATCCCTCAGAGTCACACCGGTTCCAGCAAATGCCAGCGCAACCAAACGAA 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 TTCACATACAATCCCTCAGAGTCACACCGGTTCCAGCAAATGCCAGCGCAACCAAACGAA 1065
Query 939 GAAAAGGGCCGATGCACCATCATGTGAGTCCATTTTTAAAAGT-T-GAAAAATTCCGCCA 996
|||||||||||||||||||||||||||||||||||| |||||| | ||| | ||| | |
Sbjct 1066 GAAAAGGGCCGATGCACCATCATGTGAGTCCATTTT-AAAAGTCTTGAAGAGTTCAGTTA 1124
Query 997 ATTCTCTTTTCAAGTGTCTTTATTATATCTGCGTGTAACAATCAAAGAGTGTCAGTAAAA 1056
||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1125 ATTCTCTTTTCCTGTGTCTTTATTATTTCTGCGTGTAACAATCAA-GAGTGTCAGTAAAA 1183
Query 1057 TTAGGGTTCCTTGTTTCTGGGTTGATGATGACTCTTAGCACTTGAGATCTCTAATCAACC 1116
|||| ||| ||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1184 GTAGGATTC-TTGTTTCTGGGTTGATGATGACTCT-AGCATTTGAGATCTCTAATCAACC 1241
Query 1117 TAGTCACGGTCTCAAAACTCATTTGTTGTGTCTGTGTAGTCTTTTGTAAGGACTTCTGCG 1176
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1242 TAGTCACGGTCTCAAAACTCATTTGTTGTGTCTGTGTAGTCTTTTGTAAGGA-TTCACCA 1300
Query 1177 TGTAACAAT-T-CATCTTGGTTCCCAGTTTGATTCAGTCCTATGTTTCTTATTATATATA 1234
| || ||| | |||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1301 T-TATGAATATTCATCTTGGTTCCCAGTCTGATCCAGTCCTATGTTTCTTATTATATATA 1359
Query 1235 AAA 1237
|||
Sbjct 1360 AAA 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60792859995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5