BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473435
Length=893
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32420.1 | Symbols: | F-box and associated interaction doma... 1190 0.0
> AT1G32420.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11701995-11702903 FORWARD LENGTH=909
Length=909
Score = 1190 bits (644), Expect = 0.0
Identities = 817/900 (91%), Gaps = 14/900 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAGAGGAAACGAAGAGAACAACCACAAGACCTCCTCACCATCGTCTACGCAACTT 60
||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
Sbjct 1 ATGAAGAGAGGAAACGAAGAGAACAACCACAAGACCTCCTCATCATCGTCTACACAACGT 60
Query 61 CTTCGCTGCCGTGAAATCTCAACCGGAGAAAAGTGCGTCGATGTCAATATCCCTCTGGAT 120
||| || ||||| |||||||| |||||||||||| || | | ||||||||||||||||||
Sbjct 61 CTTAGCCGCCGTAAAATCTCAGCCGGAGAAAAGTCCGGCAACGTCAATATCCCTCTGGAT 120
Query 121 CAAACGGTGGAGATACTCAAGAAACTACCGGCAAAGTCCCTCTTGAGGTTTCAATGCGTC 180
| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 121 CTAACGGTGGAGATACTCAAGAAACTACCGGCAAAATCTCTCTTGAGGTTTCAATGCGTC 180
Query 181 TCGAAGGAATGGTTATCAATTATCAGCAGCCGTAGAGACTTCATTGACTCGATCGTGACT 240
|||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 181 TCGAAGCAATGGTTATCAATCATCAGCAGCCGTAGAGACTTCATAGACTCGATCGTGACT 240
Query 241 CGTTCTTTGACTCAGTCGCCACCACGTGATACCAAACTCATCTTCCACCACCAAG---TA 297
|| |||||||||||| | ||||| ||||||| |||||||||||| |||||||||| |
Sbjct 241 CGATCTTTGACTCAGCCACCACCGCGTGATATCAAACTCATCTTTCACCACCAAGTTCTT 300
Query 298 GATACTGGACCTAATTTCTTCATCTTCTCGTCTACTTACCCTCAAAATACAGACAAAGAA 357
|| | |||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATCCGGGACCTCACTTCTTCATCTTCTCGTCTACTTACCCTCAAAATACAGACAAAGAA 360
Query 358 TCATTAACAACTAGAGCCGGATCGTATCACTATGTCCGTGGCTTGATTTGTTGTTGGTTA 417
||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct 361 TCATTAACAACCAGAGCCAGCTCGTATCACTATGTCCGTGGCTTGATTTGTTGTTGGTCA 420
Query 418 GACTTTCCTACTACGGTAGACATATATAACCCTACCACGAGGCAGTACTATACCGTACCG 477
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CACTGTCCTACTACGGTAGACATATATAACCCTACCACGAGGCAGTACTATACCGTACCG 480
Query 478 GATACGAACCGGTACCAATACATAGACACTTGCTTCTTTGGATACGACCCTCTCGAAAAT 537
||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 481 GATACTAACCGGTACCAATACATAGAAACTTGCTTCTTTGGATACGACCCTGTCGAAAAT 540
Query 538 CAATACAAAGTAATGGTCTTACCAAAGTACGATATGGAGGAGAAGCCTTGTCAAGTATTT 597
|||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||
Sbjct 541 CAATACAAAGTAATGGTCTTACCAAAATACTATATGGAGGAGTCGCCTTGTCAAGTATTC 600
Query 598 ACAGTGGGAGATCCCATGGAGAAGCCCTGGAGAGACATCCCAGGCATTGGACTTCACTTT 657
||||||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||
Sbjct 601 ACAGTGGGAGATCCCATAGAGAAGCCTTGGAGAGACATCCAAGGCATTGGAGTTCACTTT 660
Query 658 CCATTAGAAC-ATGCGGTTTGCATCAACGG-GTTTATCTATTACCGAG-CAAGTAATAAA 714
| || ||| |||| |||||||||||||| ||| |||||||||| || ||| |||| ||
Sbjct 661 CTTTT-GAAAGATGCTGTTTGCATCAACGGTGTT-ATCTATTACC-AGGCAACTAATGAA 717
Query 715 CATCGCGGTTCTACTTTTTTCTTGGTGAGTTTTGATGTAAGGTCAGAGAAGTTTAATCAT 774
|| | | ||| || | ||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 718 TAT-G-G-TTCCACATATTTCTTGGTGAGTTTTGATGTTAGGTCCGAGAAATTTAATCAT 774
Query 775 GTAAAGGCTCCGGAAATACTGATGGATCACCCTTGCACTTTGATAAACTATCAAGGGAAG 834
|| ||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 775 GTCAAGGCACCGAAAATACTGACGGATCATCCTTGCACTTTGATAAACTATCAAGGGAAG 834
Query 835 TTAGGATTTATCATGTGTTGCAAGAAGGG-TGTGGCAATTTGGGTTATGGAGGATGCTGA 893
|||||| |||| ||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 835 TTAGGACTTATAATGTGTTGCAAGAAGGGCT-TGGAAATTTGGGTTATGGAGGATGCTGA 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43603239596
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5