BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473436
Length=1888
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32440.1 | Symbols: PKp3 | plastidial pyruvate kinase 3 | ch... 2977 0.0
> AT1G32440.1 | Symbols: PKp3 | plastidial pyruvate kinase 3 |
chr1:11712162-11715112 FORWARD LENGTH=1908
Length=1908
Score = 2977 bits (1612), Expect = 0.0
Identities = 1804/1896 (95%), Gaps = 15/1896 (1%)
Strand=Plus/Plus
Query 1 TCTGCATCTGCTCTGTTCCTCA-GATTCTCTGCTAATGGCGGCGTTA-GGTCAAATCTCC 58
||||||||| |||||||||||| | ||||||||| ||||| || ||| ||||||||||||
Sbjct 9 TCTGCATCTCCTCTGTTCCTCAGGTTTCTCTGCTCATGGCTGC-TTATGGTCAAATCTCC 67
Query 59 TCGGGAATGACTGTAGATCCTCAGGTTCTCTCTTCCTCCAGAAACATTGGAGTTTCACTA 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 68 TCGGGAATGACTGTAGATCCTCAGGTTCTCTCTTCCTCCAGAAACATTGGAGTTTCCCTA 127
Query 119 TCACCTCTCCGGCGAACACTAATCGGCGCCGGAGGTAGGTCTAC---TATCTCCCTCCGT 175
|||||||||||| ||||||||||||||||||||| ||||||||| |||||| ||||||
Sbjct 128 TCACCTCTCCGGAGAACACTAATCGGCGCCGGAGTTAGGTCTACTAGTATCTCTCTCCGT 187
Query 176 CAATGTTCTCTCTCCGTTAGATCGATCAAAATCACCGAAGATAACCGCAAAGTTAAAGCT 235
|||||||||||||||||||||||||| |||||| ||||||||| ||||||| |||||||
Sbjct 188 CAATGTTCTCTCTCCGTTAGATCGATTAAAATCTCCGAAGATAGCCGCAAACCTAAAGCT 247
Query 236 TATGCTGATAACGGCGCTTTCGATAT-GGA-TTCTTCAG-TTGATTCATCATATAGATTG 292
||||| || ||||| ||||| ||| | ||| || || | || ||||||||||||||||
Sbjct 248 TATGCAGAGAACGGTGCTTTTGATGTGGGAGTT-TT-GGATT-CTTCATCATATAGATTG 304
Query 293 GCGGATTCAAGAACAAGTAATAATGATTCGAGGAGGAAGACTAAGATTGTGTGTACGATT 352
|| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 305 GCTGATTCAAGAACAAGTAGTAATGATTCAAGGAGGAAGACTAAGATTGTGTGTACGATT 364
Query 353 GGACCGTCATCGAGTTCTCGGGAGATGATTTGGAAGCTCGCGGAAGCGGGAATGAATGTG 412
|||||||| ||||||||| |||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 365 GGACCGTCTTCGAGTTCTAGGGAAATGATTTGGAAACTCGCGGAAGCTGGAATGAATGTG 424
Query 413 GCTCGTTTGAATATGTCTCATGGTGATCATGCTTCTCATCAGA-AGACTATTGATTTAGT 471
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 425 GCTCGTTTGAATATGTCTCATGGTGATCATGCTTCTCATCAGATA-ACTATTGATTTAGT 483
Query 472 TAAGGAATATAATTCTTTGTTTGTTGACAAAGCTATTGCTATTATGTTGGATACAAAGGG 531
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TAAGGAGTATAATTCTTTGTTTGTTGACAAAGCTATTGCTATTATGTTGGATACAAAGGG 543
Query 532 TCCTGAGGTTCGAAGCGGGGATGTACCTCAGCCGATATTTCTTGAAGAGGGTCAAGAGTT 591
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 544 TCCTGAGGTTCGAAGCGGGGATGTACCGCAGCCGATATTTCTTGAAGAGGGTCAAGAGTT 603
Query 592 TAATTTTACTATCAAGAGAGGTGTTTCGCTTAAAGACACTGTTAGTGTAAATTATGATGA 651
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TAACTTTACTATCAAGAGAGGTGTTTCGCTTAAAGACACTGTTAGTGTAAATTATGATGA 663
Query 652 TTTTGTTAATGATGTTGAAGTTGGGGACATACTTTTGGTGGATGGTGGAATGATGTCGTT 711
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 664 TTTTGTGAACGATGTTGAAGTTGGGGATATACTTTTGGTGGATGGTGGAATGATGTCGTT 723
Query 712 AGCTGTTAAATCAAAGACGAGTGATTTGGTGAAGTGTGTGGTTATTGACGGTGGAGAGCT 771
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 724 AGCTGTTAAATCAAAGACGAGTGATTTGGTGAAGTGTGTGGTTATTGATGGTGGAGAGCT 783
Query 772 TCAATCTAGGCGTCACTTGAATGTTAGAGGAAAGAGTGCGACTCTTCCTTCCATAACAGA 831
||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| |||||
Sbjct 784 TCAATCTAGACGTCACTTGAATGTTCGAGGAAAGAGTGCGACTCTTCCATCCATTACAGA 843
Query 832 CAAAGATTGGGAAGATATAAAATTTGGTGTGGACAACCAAGTCGATTTCTATGCCGTCTC 891
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 844 CAAAGATTGGGAAGACATAAAATTTGGAGTGGACAACCAAGTCGATTTCTACGCCGTCTC 903
Query 892 CTTTGTTAAGGATGCTAAAGTTGTTCATGAGTTGAAGAACTATCTCAAAACCTGCAGTGC 951
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 904 CTTTGTTAAGGATGCTAAAGTTGTCCATGAGTTGAAGAACTATCTCAAAACCTGCAGTGC 963
Query 952 GGATATATCGGTAATCGTGAAGATTGAAAGCGCTGACTCTATAAAGAATCTTCCTTCTAT 1011
|| |||||||| || ||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 964 AGACATATCGGTGATTGTGAAAATTGAAAGTGCAGACTCTATAAAGAATCTTCCTTCTAT 1023
Query 1012 CATATCTGCTTGTGATGGGGCAATGGTTGCTCGTGGAGATCTTGGAGCTGAACTTCCCAT 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CATATCTGCTTGTGATGGGGCAATGGTTGCTCGTGGAGATCTTGGAGCTGAACTTCCCAT 1083
Query 1072 TGAAGAGGTCCCTTTGTTACAGGAAGAGATAATCAGAAGGTGTAGGAGCATTCATAAACC 1131
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1084 TGAAGAGGTCCCGTTGTTACAGGAAGAAATAATCAGAAGGTGTAGAAGCATTCATAAACC 1143
Query 1132 AGTGATTGTTGCCACAAACATGCTAGAGAGTATGATTAATCATCCAACGCCTACAAGAGC 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 AGTGATTGTTGCCACAAACATGCTAGAGAGTATGATTAATCATCCAACGCCTACAAGAGC 1203
Query 1192 TGAAGTCTCTGACATTGCAATTGCAGTACGTGAAGGTGCAGATGCAATCATGCTTTCTGG 1251
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1204 TGAAGTCTCTGACATTGCAATTGCAGTACGTGAAGGCGCAGATGCTATCATGCTTTCTGG 1263
Query 1252 TGAAACCGCACACGGAAAGTTTCCGCTCAAAGCTGTTAACGTAATGCATACTGTGGCATT 1311
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1264 TGAAACCGCACATGGAAAGTTTCCGCTGAAAGCTGTTAACGTAATGCATACTGTGGCGTT 1323
Query 1312 GAGAACTGAGGCAAGTCTACCTGTCAGAACCTCTGCAACCCGTACCACTGCTTACAAGGG 1371
|||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1324 GAGAACCGAGGCAAGTCTACCTGTCAGAACCTCGGCATCCCGTACCACTGCTTACAAGGG 1383
Query 1372 TCACATGGGCCAAATGTTTGCTTTTCATGCTTCTATAATGGCAAATACACTGAGCTCACC 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 TCACATGGGCCAAATGTTTGCTTTTCATGCTTCTATAATGGCAAATACACTGAGCTCACC 1443
Query 1432 GCTAATTGTATTCACGAGAACCGGATCCATGGCAGTGCTTCTAAGCCATTACCGCCCATC 1491
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1444 GCTAATTGTATTTACGAGAACCGGATCCATGGCAGTGCTTCTAAGCCACTACCGCCCATC 1503
Query 1492 CGCAACAATTTTCGCCTTCACGAACCAGAGAAGGATAATGCAAAGGCTGGCTCTTTATCA 1551
|||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 1504 TGCAACAATTTTCGCCTTCACAAACCAGAGAAGAATAATGCAAAGGCTTGCTCTTTATCA 1563
Query 1552 AGGTGTCATGCCTATATATATGGAGTTCTCGGATGATGCAGAAGATACATATGCCCGGTC 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 AGGTGTCATGCCTATATATATGGAGTTCTCGGATGATGCAGAAGATACATATGCCCGGTC 1623
Query 1612 TCTGAAACTCTTACAGGACGAGCATATGCTCAAGGAAGGACAACATGTAACTCTTGTCCA 1671
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1624 TCTCAAACTCTTACAGGACGAGAATATGCTCAAGGAAGGACAACATGTAACTCTTGTCCA 1683
Query 1672 AAGCGGCTCGCAACCCATTTGGCGTGAAGAATCAACACATCTCATACAAGTCCGTAAGAT 1731
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 AAGTGGCTCGCAACCCATTTGGCGTGAAGAATCAACACATCTCATACAAGTCCGTAAGAT 1743
Query 1732 AAATATAGGTGGATGATGTTTTTACTTCTTCAGCTACACAACATCTTGATTTTACTCAGC 1791
||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1744 AAAGATAGGTGGATGATGTTTTTACTTCTTGAGCTACACAACATCTTGCTTTTACTCAGC 1803
Query 1792 TTTCTTTCTCTTACACACTTTTATCCATAtttttttGAATCACTCACAGTGAATCAAACA 1851
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1804 TTTCTTTCTCTTACACAGTTCGATCCATATTTTTTTGAATCACTCACAGTGAATCAAACA 1863
Query 1852 ACCATATATATATTTTAAGTTATTGAAGCttttttt 1887
|||||||| | |||||||||||||||||||||||||
Sbjct 1864 ACCATATAAA-ATTTTAAGTTATTGAAGCTTTTTTT 1898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93473414790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5