BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473438

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G32460.1 | Symbols:  | unknown protein; Has 19 Blast hits to...   730    0.0  


> AT1G32460.1 | Symbols:  | unknown protein; Has 19 Blast hits 
to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:11738118-11739326 FORWARD 
LENGTH=659
Length=659

 Score =  730 bits (395),  Expect = 0.0
 Identities = 486/528 (92%), Gaps = 13/528 (2%)
 Strand=Plus/Plus

Query  100  ttttttt-CATTACCGTACGAAGACGAATCAT-CAACC-AGAAGTTTAAAGGTATTGATG  156
            ||||||| ||||||||||||  || ||||| | |  || |||||||||||||||||||||
Sbjct  137  TTTTTTTCCATTACCGTACGCCGAAGAATC-TGC-CCCAAGAAGTTTAAAGGTATTGATG  194

Query  157  GAACAACCGAGGAACAACAAGACCTCTCAAGAACAAGCTCGTGAATCGCTCATCGAAATC  216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  195  GAACAACCGAGGAACAACAAGACCTCTCAAGAACAAGCTCGTGAATCGCTCATCGAAATC  254

Query  217  TCTTACACTTCACCGGAGGAAGACGAGGTTATAACGTTCTCAGATGTGAAACCTGTCACC  276
            || ||||||||||| |||||||||||||||||||| | |||||||||||| |||||||||
Sbjct  255  TCCTACACTTCACCCGAGGAAGACGAGGTTATAACCTACTCAGATGTGAAGCCTGTCACC  314

Query  277  AATATCTCAAACGGAGGTACCAAAAGAAACAAGGATGATGAGGAGAAGCTTAGAGATGAG  336
             |||||||||||||| || ||||| ||||||| ||||||| ||||||||| |||||||||
Sbjct  315  TATATCTCAAACGGAAGTGCCAAAGGAAACAAAGATGATGCGGAGAAGCTCAGAGATGAG  374

Query  337  CTGATTTCGATATCTTACGACGAGTCACCGTCACCTTCACCGGATGTGGATGTAGCTGTT  396
            |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  375  CTGATTTCGATATCCTACGACGAGTCACCGTCGCCTTCACCGGATGTGGATGTAGCTGTT  434

Query  397  TCGCCGACCCTGCCTAACGGTATATGTCGTGGATAGGAAGTTTATGTACAGCTTGAAGAA  456
            |||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||
Sbjct  435  TCGCCGACCCTGCCGAACGGTGTATGTCGTGGATAGGAAGTTAATGTACAGCTTGAAGAA  494

Query  457  GTCTTTACTTTCTTATGCGAAAGACTTT-GGTTTGGTCTAAAAGTGAGACCATTGTTATA  515
            |||||||||||||||||| ||||||||| ||||||||||||||||  |||||||||||||
Sbjct  495  GTCTTTACTTTCTTATGCAAAAGACTTTTGGTTTGGTCTAAAAGTT-GACCATTGTTATA  553

Query  516  TGTTAAAACGTTTCT-CCTCAACTATATGATTGAAAATCAATGAAGTTTCTGTTTTGTTG  574
            ||||||  ||||||| ||| ||||||||||||||||||||||||||||||| |||  |||
Sbjct  554  TGTTAA--CGTTTCTTCCTTAACTATATGATTGAAAATCAATGAAGTTTCT-TTTA-TTG  609

Query  575  TGTGTTTCTTTGACATGTCTTATATAA-GTTAAAAGCTCTGTTGAGTC  621
            |||| || |||||| |||||||||||| ||||||||||||| ||||||
Sbjct  610  TGTGCTTGTTTGACCTGTCTTATATAAAGTTAAAAGCTCTGATGAGTC  657


 Score = 75.0 bits (40),  Expect = 8e-13
 Identities = 55/62 (89%), Gaps = 1/62 (2%)
 Strand=Plus/Plus

Query  1   ATTGTCGACGTGTGAACGAGCTGGCAAAGAATATTTAACTC-TTTAACGTCaaataaaaa  59
           |||||| |||||||||||||||||||||||||||| ||| | |||   ||||||||||||
Sbjct  1   ATTGTCTACGTGTGAACGAGCTGGCAAAGAATATTAAACCCCTTTTTGGTCAAATAAAAA  60

Query  60  aa  61
           ||
Sbjct  61  AA  62



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29939551612


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5