BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473442
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32500.1 | Symbols: ATNAP6, NAP6 | non-intrinsic ABC protein... 2708 0.0
> AT1G32500.1 | Symbols: ATNAP6, NAP6 | non-intrinsic ABC protein
6 | chr1:11749823-11752106 REVERSE LENGTH=1808
Length=1808
Score = 2708 bits (1466), Expect = 0.0
Identities = 1686/1790 (94%), Gaps = 23/1790 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaaCTCTATTGGAGAAAGTACTTGTCGG-ATCGCTGCGAAAAGCAAagaga 59
|||||||| | |||||||| |||||||||||||| || ||||| ||||||||||||||||
Sbjct 31 AAAAAAAACACACTCTATTTGAGAAAGTACTTGTGGGAATCGCGGCGAAAAGCAAAGAGA 90
Query 60 gagag-agagaAGGAATCCATTAATGGCGGCTGCCACAGTTCTCGGTCGCTTATCACTGA 118
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 GAGAGAAG-GAAGGAATCCATTAATGGCGGCTGCCACAGTTCTCGGTCGCTTATCACTGA 149
Query 119 TACCAACTCTATCTTCTAAACCAAAGTTGAAATCAAACAGAAGAACAACTTCTACAAGTG 178
|||||| |||||| ||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 150 TACCAAATCTATCATCTAAACCAAAATTGAAATCTAACAGAAGAACAACTTCCACAAGTG 209
Query 179 TTTCTATACGAGCACAAGCTTCGTTCTCTGACCCTTTTGTACTTCAATTAGCTGAATCTC 238
||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 TTTCTGTTCGTGCACAAGCTTCGTTCTCTGACCCTTTTGTACTTCAATTAGCTGAATCTC 269
Query 239 TCGAAGATTCTCTGTCAGCTTCTCCTTCTTCGTCTTCTTTACCTCTCCAAAGAATCCGTG 298
||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||||
Sbjct 270 TCGAAGATTCTCTCTCAGCTTCTCCTTC-T--TCTTCTTTACCTCTTCAAAGAATCCGTG 326
Query 299 ATTCTTCCGCTGAGACTCTTTTATCTACACCATGGCCGTCACGAAAAGACGAGCCTTTCC 358
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 327 ATTCTTCCGCTGAGACTCTTTTATCTACGCCATGGCCGTCACGAAAAGACGAACCTTTCC 386
Query 359 GATTCACCGATACATCTTTCATCCGATTTTCTCAAATCGAACCCGTTTCGACCCATCAAC 418
||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| ||||
Sbjct 387 GATTCACCGATACATCTTTAATCCGATCTTCTCAAATCGAACCAATTTCGACCCAGCAAC 446
Query 419 GAAATTCTGAAATTTTGGATAATCTGACGGAAACCCAGTTCCCAAACGCTGTGATTATTG 478
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 447 GAAATTCGGAAATTTTGGATAATCTGACGGAAACCCAGTTCACAAACGCTGTGATTATTG 506
Query 479 ATGGGTTCGTGTCGAGTTTGACGATTGGTCCATCGGATTTGCCTGATGGGGTTTACTTCG 538
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 507 ATGGGTTCGTGTCGAATTTGACGATTGGTCCATCGGATTTGCCCGATGGGGTTTACTTCG 566
Query 539 GGAGCT-TCTCTGGTTTACCGGATGAGTTAACGAACCGGGTTTCTGAGTTCATAGGGAAT 597
||| | | |||||||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct 567 GGAAATAT-TCTGGTTTACCGGATGAGTTAACGAACCGGATTTCTGAGTTTATCGGGAAT 625
Query 598 TTCGATTCTGGTGATTTGTTTTGGTCGATTAATGGTATGGGAGCACCGGATTTGGTGGTG 657
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 626 TTTGATTCTGGTGATTTGTTTTGGTCGATTAATGGTATGGGAGCACCGGATTTGATGGTG 685
Query 658 ATTTATGTTCCTGAAGGGTGTAAGGTGGAGAATCCAATCTATTTGAGGTACTTTTGTGGT 717
||||||||||||||||| |||||||| |||||||| || |||||||||||||||| ||||
Sbjct 686 ATTTATGTTCCTGAAGGATGTAAGGTCGAGAATCCGATTTATTTGAGGTACTTTTCTGGT 745
Query 718 GAAACTGGTGACCGGGAATCGAAACGGTTACCGGTATCGAATCCTAGGGTTTTTGTGTTA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 GAAACTGGTGACCGGGAATCGAAACGGTTACCGGTATCGAATCCTAGGGTTTTTGTGTTA 805
Query 778 GTGGAGGAAGGAGGAGAGATTGGTATAGTTGAGGAATTTGTTGGTAAAGATGAAGAAGGG 837
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 806 GTGGAGGAAGGAGGAGAGATTGGTATCGTTGAGGAATTTGTTGGTAAAGATGAAGAAGGG 865
Query 838 TTTTATTGGACGAATCCGGTTTTGGAAGTTGTTGTTCAAAAGAATGGGAAATTGAAGCAT 897
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 866 TTTTATTGGACGAATCCTGTTTTGGAAGTTGTTGTTCAAAAGAATGCGAAATTGAAGCAT 925
Query 898 TCATATTTGCAGAAAGAGTCCATGGCTTCTGCTCATGTCAAGTGGACTTTCGTCCGACAG 957
|| |||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||
Sbjct 926 TCTTATTTGCAGAAAGAATCCATGGCTTCTGCTCATATCAAGTGGACTTTTGTCCGACAG 985
Query 958 GAGGCAGAGAGTGAATATGAGCTTGTGGAAGTGAGTACTGGTGGGAAA-TTGGGGAGGCA 1016
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 986 GAGGCAGAGAGTGAATATGAGCTTGTGGAAGTGAGTACTGGTGGGAAACTTGGG-AGGCA 1044
Query 1017 CAATGTTCATGTGCAGCAGCTTGGGCCTGATACGCTCACTGAGTTAACCACGTTTCATAT 1076
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1045 CAATGTTCATGTGCAGCAGCTTGGGCCTGATACGCTCACAGAGCTAACCACGTTTCATAT 1104
Query 1077 GTGTGTCAACGAGCAGACTCTTGATCTCCATAGCAGAATTGTCTTAGACCATCCACGAGG 1136
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1105 GTGTGTCAACGAGCAGACTCTTGATCTCCATAGCAAAATTATCTTAGACCATCCACGAGG 1164
Query 1137 CTCTTCGCGACAGCTTCACAAGTGTATTGTTGCTCATTCCTCTGGTCAAGCTGTTTTCGA 1196
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 CGCTTCACGACAGCTTCACAAGTGTATTGTTGCTCATTCCTCTGGTCAAGCTGTTTTCGA 1224
Query 1197 TGGCAATGTCCGAGTTAACAGATTAGCTCAACAGACCAATGCGGGGCAACTAACACGGAG 1256
|||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 1225 TGGCAATGTCCGAGTTAACAGATTCGCTCAACAGACCAACGCGGGACAACTAACACGGAG 1284
Query 1257 CCTCCTTCTGAAACCCCGAGCCACCGTGAACATAAAACCGAATCTTCAGATCATTGCAGA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 CCTCCTTCTGAAACCCCGAGCCACCGTGAACATAAAACCGAATCTTCAGATCATTGCAGA 1344
Query 1317 CGATGTCAAATGCTCGCATGGAGCTGCTATCAGTGATCTCGAAGAAGACCAGCTCTTCTA 1376
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1345 TGATGTCAAATGCTCTCATGGAGCTGCTATCAGTGATCTTGAAGAAGACCAGCTCTTCTA 1404
Query 1377 TTTCCAAGCTCGTGGGATCGACTTGGAGACTGCAAGAAGAGCTCTCATATCTTCTTTTGG 1436
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1405 TTTCCAAGCTCGTGGGATCGACTTGGAGACTGCAAGAAGAGCTCTCATATCGTCTTTTGG 1464
Query 1437 ATCAGAGGTTATCGAGAAGTTTCCAAATCGGGAAATCCGAGACCAAGCCAGGAATCATGT 1496
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1465 ATCAGAGGTTATCGAGAAGTTTCCAAATCGGGAAATCAGAGACCAAGCCAGGAATCACGT 1524
Query 1497 CAAAGGCTTGCTCTGATGA-TTATCCCAAAGAGAAC-G--CGTGGTGCTCACGTGCCGGT 1552
|||||||||||||||||| || || || || ||| | |||| | |||||| ||||||
Sbjct 1525 CAAAGGCTTGCTCTGATGTGTT-TCACA--GA-AACCGATCGTGATACTCACGCGCCGGT 1580
Query 1553 ATTGCACTTACGATTCATCAATTTATCCTCTGTTCATTACTGTTTAA-GGCTTGCGAGGC 1611
|||| |||||||||| |||||| ||||| |||||||||||| | || |||||| |||||
Sbjct 1581 TTTGCGCTTACGATTCGTCAATT-ATCCTTTGTTCATTACTGCTCAAAGGCTTGGGAGGC 1639
Query 1612 CCATCTAGTCCAGTTTGGCCCATATAATTAAAAT-TAAGAAGAACAACAAACAGTTGGCT 1670
|||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1640 CCATATAGTCCAGTTTGGCCCATTTAATTAAAAACTAAGAAGAACAACAAACAGTTGGCT 1699
Query 1671 TCTATATGAGTTAAATAGCGTGCAGCT-CTATTTTAAATTTGGGAAAAGGTTTCTATTGG 1729
||||||||||||||||||||||||| | || ||| ||||||||||||||||||||||| |
Sbjct 1700 TCTATATGAGTTAAATAGCGTGCAGTTTCTCTTT-AAATTTGGGAAAAGGTTTCTATTCG 1758
Query 1730 CATCTGTATAAGTAAAACGACACGATTTTTATGGATTTAAGTGAAACTTG 1779
||||||||||||||||||||| |||| ||||||||||||||| |||||||
Sbjct 1759 CATCTGTATAAGTAAAACGACGCGATGTTTATGGATTTAAGTAAAACTTG 1808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88001555385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5