BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473445
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32540.1 | Symbols: LOL1 | lsd one like 1 | chr1:11767504-11... 905 0.0
> AT1G32540.1 | Symbols: LOL1 | lsd one like 1 | chr1:11767504-11769880
FORWARD LENGTH=1602
Length=1602
Score = 905 bits (490), Expect = 0.0
Identities = 640/704 (91%), Gaps = 44/704 (6%)
Strand=Plus/Plus
Query 263 GGAAGTACAAGTGGGCAGAGCCAGTTAGTGTGTTCAGGTTGCAGAAACCTTCTGATGTAC 322
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 GGAAGTACAAGTGGGCAGAGCCAGTTAGTGTGTTCAGGTTGCAGAAACCTTCTGATGTAT 986
Query 323 CCCGTCGGGGCAACGTCCGTCTGTTGCGCCGTCTGTAACGCCGTCACCGCCGTTCCTCCG 382
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 987 CCCGTCGGAGCAACCTCCGTCTGTTGCGCCGTCTGTAACGCCGTCACGGCCGTTCCTCCG 1046
Query 383 CCTGGAACGGAGATGGCACAGTTGGTATGTGGAGGATGTCATACACTTTTAATGTACATT 442
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1047 CCCGGAACGGAGATGGCACAGTTGGTATGTGGAGGATGTCATACACTCTTAATGTACATT 1106
Query 443 CGTGGAGCTACAAGTGTTCAATGTTCTTGTTGTCACACTGTTAATCTTGCCCTCGAAGCG 502
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1107 CGTGGAGCTACAAGTGTTCAATGTTCTTGTTGTCACACTGTTAATCTCGCCCTCGAAGCA 1166
Query 503 AACCAGGTAGCGCATGTGAATTGCGGAAACTGCAAGATGCTACTAATGTATCAATATGGA 562
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1167 AACCAAGTAGCGCATGTGAATTGCGGAAACTGCATGATGCTACTAATGTATCAATATGGA 1226
Query 563 GCAAGATCAGTGAAATGTGCCGTTTGTAACTTTATCACCA-CTGTTGGGGGTTCAACGAG 621
||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct 1227 GCAAGATCAGTGAAATGTGCCGTTTGTAACTTTGTCAC-ATCTGTTGGGGGTTCAACGAG 1285
Query 622 CACGACTGATTTGAAGTTTAACAATTAAAACAATTG---CG-TCTACCTATCAATA--TA 675
||||||||||| ||||||||||||||||||| ||| | |||||||||||||| ||
Sbjct 1286 CACGACTGATTCGAAGTTTAACAATTAAAAC--TTGGATCTATCTACCTATCAATACATA 1343
Query 676 TTGAGTTATGAGCAATATAGAGGAAGCATCAAATCttttttttttttttctctctctctc 735
|||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1344 TTGAGTTATGAGCAATATAGAGGAAGCATCAAATCTTTTT---------CACTCTCTCT- 1393
Query 736 tctctTCGATCAAGAATCCGGCAGTGAGATGTCATGAGTTTGAAACCATCTTCGGAAGTA 795
|| |||||||||||||||||||| || | | ||||||||||| ||||||||||
Sbjct 1394 TC-----GATCAAGAATCCGGCAGTGA--TG--A-G--TTTGAAACCATTTTCGGAAGTA 1441
Query 796 AATTAAATATGTAATTTGTCAAAATCTCTGACTTTGGTCTCTTTGTCCGTTTGTATAGAG 855
||| |||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1442 AATGAAATATGTAATTCGTCGAAATTTCTGACTTTGGTCTCTTTGTCCGTTTGTATAGAG 1501
Query 856 CTATCTCTCTTCTTTGGTTTTTGTTTTGTTGTTATTTTCTCTTGAGAAAAATTTGATTCA 915
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1502 CTATCTCTCTTCTTTGGTTTTTGTTTTGTT--------CTCTTAAGAAAAATTTGATTCA 1553
Query 916 CCAGTTTGTAATTAAGAGTGATTCAGAAATCAAAGCTAGACTTT 959
||||||||||| |||||||||||||||||||||||||||||
Sbjct 1554 CCAGTTTGTAA----GAGTGATTCAGAAATCAAAGCTAGACTTT 1593
Score = 250 bits (135), Expect = 2e-65
Identities = 217/253 (86%), Gaps = 20/253 (8%)
Strand=Plus/Plus
Query 27 ATTGATGTAAGTGAGGAATTGGGAGAAGAAGTGAAGAACACAAGATGTGTCTTCTTCTTC 86
||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 372 ATTGATGAAAGTGAGGAAATGGGAGAAGAAATGAAGAACACAGGATGTGTCTTCTTCTTC 431
Query 87 TAGGTCACTAA-AAACATCAACAAAGA-GAGAAAG-CA--AGCCAT-T-AT-------TA 132
|| |||||||| ||| ||||||||||| ||| ||| || | || | || |
Sbjct 432 TAAGTCACTAACAAA-ATCAACAAAGAGGAG-AAGCCATTA-TTATATAATAGAGAGATT 488
Query 133 GAGAGAAGAGATTTATCCAAAAAGTTTTTTGCAATTATTCTTGGAGTTAATAATGCCAGT 192
||||||||||||||||||||||| | |||||||| |||||||||| ||||||||||||
Sbjct 489 GAGAGAAGAGATTTATCCAAAAA-AATATTGCAATTCTTCTTGGAGTGAATAATGCCAGT 547
Query 193 CCCTCTTGCACCATATCCAACACCTCCGGCACCGGCACTGGCCCCGTCGTACA-CTCCTC 251
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | | ||
Sbjct 548 CCCTCTTGCACCATATCCAACACCTCCGGCACCGGCACTGGCTCCGTCGTACAACAC-TC 606
Query 252 CTCCGGCTAATGG 264
||||||| |||||
Sbjct 607 CTCCGGCAAATGG 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5