BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473448
Length=809
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32580.1 | Symbols: | plastid developmental protein DAG, pu... 1162 0.0
AT2G33430.1 | Symbols: DAL1, DAL | differentiation and greening... 326 3e-88
> AT1G32580.1 | Symbols: | plastid developmental protein DAG,
putative | chr1:11784057-11785637 FORWARD LENGTH=948
Length=948
Score = 1162 bits (629), Expect = 0.0
Identities = 714/755 (95%), Gaps = 5/755 (1%)
Strand=Plus/Plus
Query 1 ACTTAAACCCTAGTCTAGTTCATTTCTCAGACTCTGACACCTCACTGAGCTTCAATGGCG 60
|||||||||||||||||| ||||||||||||||||| |||||||||| || ||||||||
Sbjct 1 ACTTAAACCCTAGTCTAG-TCATTTCTCAGACTCTG--ACCTCACTGATCTCCAATGGCG 57
Query 61 AAAACCCTAGCTCGCTCCACCGCGTCACGCATCACCAAACGCTTCTTCTCCACCTCCGGA 120
|||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 58 AAAACCCTAGCTCGCTCCACAGCGTCACGCATCACCAAGCGCTTAATCTCCACCTCCGGA 117
Query 121 GCCACCACTCCTTCCCCTTCTTACCTCCTCTCCCGTCGATCAACCCCAGCGATCTCCCAT 180
||||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||
Sbjct 118 GCCACCACTCCTTCCCCTTCTTATATCCTCTCCCGTCGATCAACCCCGGTGTTCTCCCAT 177
Query 181 GCCGTCGGATTCGTCTCTTCCTTGAATCGTCTCACAACGATTCGAACTCGAATGGATAGG 240
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 178 GCCGTCGGATTCATCTCTTCCTTGAATCGTTTCACAACGATTCGAACTCGAATGGATAGG 237
Query 241 TCCGGTGGGTCATACTCTCCTCTCAAATCCGGTTCGAATTTCAGCGACCGACCACCTACA 300
|||||||| || ||||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 238 TCCGGTGGATCGTACTCTCCTCTAAAATCCGGTTCGAATTTCAGCGACCGAGCACCCACT 297
Query 301 GAGATGGCGCCGTTGTTTCCTGGCTGCGATTATGAGCATTGGCTT-ATTGTAATGGACAA 359
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 298 GAGATGGCGCCGTTGTTTCCTGGCTGCGATTATGAGCATTGG-TTGATTGTAATGGACAA 356
Query 360 ACCTGGAGGGGAAAACGCTACAAAGCAACAAATGATTGATTGTTATGTTCAAACCCTAGC 419
||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 357 ACCTGGAGGCGAAAACGCTACTAAGCAGCAAATGATTGATTGTTATGTTCAAACCCTAGC 416
Query 420 TAAAATCCTCGGCAGTGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAG 479
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TAAAATTATCGGCAGTGAGGAAGAAGCTAAGAAGAAGATTTATAATGTATCGTGTGAAAG 476
Query 480 GTATTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAATAAATTTGAAGGACTTCC 539
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 477 GTATTTTGGATTTGGTTGTGAGATTGATGAAGAGACATCAAACAAACTTGAAGGACTTCC 536
Query 540 TGGTGTTCTTTTCGTTTTACCAGACTCTTATGTTGATCAAGAGAACAAAGATTACGGAGC 599
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGGTGTTCTCTTCATTTTACCAGACTCTTATGTTGATCAAGAGAACAAAGATTACGGAGC 596
Query 600 TGAGCTTTTTGTGAATGGAGAAATAGTCCAACGACCTCCAGAGAGACAGAGAAAGATCAT 659
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 597 TGAGCTGTTTGTGAATGGAGAAATAGTTCAACGTCCTCCAGAGAGACAGAGAAAGATCAT 656
Query 660 CGAGTTAACGACCCAGAGAAGCAATGATAAACCAAAGTACCACGACAGGACCAGATATGT 719
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 657 TGAGTTAACGACCCAGAGAACCAATGATAAACCAAAGTACCACGACAAGACCAGATATGT 716
Query 720 CCGAAGGAGAGAGAACATGCGTTGAATCAAAATCT 754
|||||| ||||||||||||||||||||| ||||||
Sbjct 717 CCGAAGAAGAGAGAACATGCGTTGAATCCAAATCT 751
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 781 TCTCCTTATGTAATGGCTTTGTAGTTTGG 809
|||||||||||||||||||||||||||||
Sbjct 831 TCTCCTTATGTAATGGCTTTGTAGTTTGG 859
> AT2G33430.1 | Symbols: DAL1, DAL | differentiation and greening-like
1 | chr2:14162667-14165042 FORWARD LENGTH=1038
Length=1038
Score = 326 bits (176), Expect = 3e-88
Identities = 329/403 (82%), Gaps = 10/403 (2%)
Strand=Plus/Plus
Query 253 TACTCTCCTCTCAAATCCGGTTCGAA-TTTCAGCGACCGACCACCTACAGAGATGGCGCC 311
||||| || || || || || || || ||| || || || || || || |||||||| ||
Sbjct 237 TACTCGCCGCTTAACTCTGGCTCTAACTTT-AGTGATCGGCCTCCGACGGAGATGGCTCC 295
Query 312 GTTGTTTCCTGGCTGCGATTATGAGCATTGGCTTATTGTAATGGACAAACCTGGAGGGGA 371
|||||||| || |||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 296 TTTGTTTCCGGGATGCGATTATGAGCACTGGCTTATTGTTATGGATAAACCTGGCGGGGA 355
Query 372 AAACGCTACAAAGCAACAAATGATTGATTGTTATGTTCAAACCCTAGCTAAAATCCTCGG 431
| ||| || ||||| || |||||||||||||| ||||||||||||| ||| || | ||
Sbjct 356 AGGCGCGACTAAGCAGCAGATGATTGATTGTTACATTCAAACCCTAGCGAAAGTCGTTGG 415
Query 432 CAGTGAGGAAGAAGCTAAGAAGAAG-ATTTATAATGTATCGTGTGAAAGGTATTTTGGAT 490
||||||||||| || |||||| | || || ||||| || ||||| |||||||| || |
Sbjct 416 AAGTGAGGAAGAGGCGAAGAAG-CGAATCTACAATGTTTCATGTGAGAGGTATTTAGGGT 474
Query 491 TTGGTTGTGAGATTGATGAAGAGACATCAAATAAATTTGAAGGACTT-CCTGGTGTTCT- 548
|||||||||||||||||||||||||||| | ||| ||||||| || || ||||||||
Sbjct 475 TTGGTTGTGAGATTGATGAAGAGACATCCACTAAGCTTGAAGGT-TTACCAGGTGTTCTG 533
Query 549 TTTCGTT-TTACCAGACTCTTATGTTGATCAAGAGAACAAAGATTACGGAGCTGAGCTTT 607
||| || || ||||| || ||||| |||| || ||||||||||| ||||||||||| |
Sbjct 534 TTT-GTGCTT-CCAGATTCCTATGTGGATCCTGAAAACAAAGATTATGGAGCTGAGCTGT 591
Query 608 TTGTGAATGGAGAAATAGTCCAACGACCTCCAGAGAGACAGAG 650
|||| |||||||| |||||||||||| | |||||||| |||||
Sbjct 592 TTGTTAATGGAGAGATAGTCCAACGATCACCAGAGAGGCAGAG 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39383571248
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5