BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473449

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G32583.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   651    0.0  


> AT1G32583.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; BEST Arabidopsis thaliana protein match 
is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast 
hits to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:11785806-11788286 
FORWARD LENGTH=1962
Length=1962

 Score =  651 bits (352),  Expect = 0.0
 Identities = 376/388 (97%), Gaps = 0/388 (0%)
 Strand=Plus/Plus

Query  112   CATTAACGAAAACCGCACCGCTCTTCCCAGAAAGCTACTACTCTCTCCCGACATTGGGGA  171
             ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct  1392  CATAAACGAAAACCGCACCGCTCTTTCCAGAAAGCTACTACTCTCTCCCGACATTGGCGA  1451

Query  172   TGGGACCAACAGGATTGGACAAGATTGCTCAAAAGATGATATTGTTCTCTTTCAAGGCTC  231
             |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1452  TGGGACCAACAGAATCGGACAAGATTGCTCAAAAGATGATATTGTTCTCTTTCAAGGCTC  1511

Query  232   AACAAATCCACTTCCAAGTGGAGTTCCTTCATATACAGTTGAGATCTTCAACTCTTGTGT  291
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1512  AACAAATCCACTTCCTAGTGGAGTTCCTTCATATACAGTTGAGATCTTCAACTCTTGTGT  1571

Query  292   CTCCGATTGCAATATCGCAGAGATCCACGTCAGTTGTGGCTGGTTCAGCTCGGTCAGACT  351
             ||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  1572  CTCGGATTGCAATATAGCAGAGATCCACGTCAGTTGTGGCTGGTTCAGCTCAGTCAGACT  1631

Query  352   GGTTAACCCTCGAGTTTTCAGGCGACTCGACTACGACGATTGTCTGGTTAACGACGGTCA  411
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1632  GGTTAACCCTCGAGTTTTCAGGCGACTCGACTACGACGATTGTCTGGTTAACGATGGTCA  1691

Query  412   ACCTCTTGGTCCTGGACAGACACTCTCCTTTCAATATGCTAACAGCTTCTCTTACCCCCT  471
             ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct  1692  ACCTCTTGGTCCTGGACAGTCACTCTCCTTTCAATATGCTAACAGCTTCTCTTACCCTCT  1751

Query  472   CTCTGTTGCTTCAGTCTCTTGCTTCTGA  499
             ||||||||||||||||||||||||||||
Sbjct  1752  CTCTGTTGCTTCAGTCTCTTGCTTCTGA  1779


 Score =  126 bits (68),  Expect = 2e-28
 Identities = 107/124 (86%), Gaps = 9/124 (7%)
 Strand=Plus/Plus

Query  1     GAGAATGGAACATCTCTACCAATTCCAACATTGGCTCTTCTTCATAGGTCTT----T-T-  54
             ||||||||||||| ||||| ||||||||||||||||||||||||||||||||    | | 
Sbjct  1242  GAGAATGGAACATATCTACAAATTCCAACATTGGCTCTTCTTCATAGGTCTTGGAGTGTT  1301

Query  55    G-T--CTCTTGCTCTGTCTGTGAAGGCCAACGGCTTCAAAGGTTCTAATGATGGAAGAAG  111
             | |  ||||| ||||||||||||||||||| | |||| ||||||| |||||| |||||||
Sbjct  1302  GCTGTCTCTTTCTCTGTCTGTGAAGGCCAATGACTTCGAAGGTTCCAATGATAGAAGAAG  1361

Query  112   CATT  115
             ||||
Sbjct  1362  CATT  1365



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23810985678


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5