BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473451
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32600.1 | Symbols: | F-box associated ubiquitination effec... 608 2e-173
> AT1G32600.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:11794802-11795683 FORWARD LENGTH=882
Length=882
Score = 608 bits (329), Expect = 2e-173
Identities = 438/491 (89%), Gaps = 6/491 (1%)
Strand=Plus/Plus
Query 350 ATTGCTTCTTCAAAGATCGGACCGGTACGGTAT-TGGACCATTGTATGTATTGGATAGCA 408
|||||||||||||||| ||||||||||||| | | ||| ||||||||||||||||||||
Sbjct 383 ATTGCTTCTTCAAAGAGAGGACCGGTACGGT-TGTCGACAATTGTATGTATTGGATAGCA 441
Query 409 GACCGGTCCAACAAGGAAAAATCCATCTTATGCTTTGATTTCGTTAATGAAGAGTACTCA 468
|||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 442 AACCGGTTCAACAAAGAAAAATTCATCTTATGCTTTGATTTCGTTAATGAAGAGTACTCA 501
Query 469 AACCTAAAAGTTCCCATGATGCTCTCAGGATTGGAGTTCAATTCATGGTTAGATGTTTCA 528
|| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 502 AAACTAAACGTTCCGATGATGCTATCAGGATTGGAGTTCAATTCATGGTTAGATGTTTCA 561
Query 529 AGGGGACAACTGTGCGTTATCAGTCACTACCCAAGTCTAGAAGACAATTTATGTGTATGT 588
|||||| |||| || ||||||| ||||||||||||| |||| ||||||||||||||||||
Sbjct 562 AGGGGAGAACTATGTGTTATCAATCACTACCCAAGTGTAGATGACAATTTATGTGTATGT 621
Query 589 CGCCGAGAAATTAGAAGCGGTTTGAAGATTGTAAGATGGGACAGTGACCCGTGGATGAAT 648
|| ||||||||||||||||| |||||||| |||||||| || |||||||||||||||
Sbjct 622 CGACGAGAAATTAGAAGCGGCAAGAAGATTGCGAGATGGGATAGCGACCCGTGGATGAAT 681
Query 649 ATAGCGGGAAATGATGAAGAACCCGTTGATATTAGGTTTGCATGCATAGCAAGAAACAAT 708
|||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||| ||
Sbjct 682 GTAGCGGGAAACGATGACGAACCCGTTGATATTAGGTTTGTATGCATAGCAAAAAACGAT 741
Query 709 GAAATCTTCATAGTCGTACGATCTCTTAGTGAAGAAGAAGAGGACAAGGTTTTGGTGTAC 768
||| |||| |||| || |||| || |||| |||||||||||||||| ||||| ||||||
Sbjct 742 GAAGTCTTTGTAGTGGTGCGATGTCGTAGTAAAGAAGAAGAGGACAATGTTTTTGTGTAC 801
Query 769 AATAAGGAACAGAACGAGTTCATTAAAGTTCCATTTTCTAGTCGATCGTTTGAAAGTGTT 828
||||||||||| |||||||||||| ||||| ||||||||||| || || |||||||||
Sbjct 802 AATAAGGAACAAAACGAGTTCATTGAAGTTTTATTTTCTAGTC-AT--TT-GAAAGTGTT 857
Query 829 GGGAAGTATGA 839
|||| ||||||
Sbjct 858 GGGATGTATGA 868
Score = 457 bits (247), Expect = 9e-128
Identities = 319/352 (91%), Gaps = 11/352 (3%)
Strand=Plus/Plus
Query 1 ATGTCGAATCAACAATCATCCTCTCAGCTCATTTCATTGCACAAAGATGGTTTATACCTT 60
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGAATAAACAATCA---TCTCAGCTCATTTCATTGCACAAAGATGGTTTATACCTT 57
Query 61 CTCGACCTTAACAAAACCACGTCTCTGAAGCTTGATTTGCCCTTTACATTACCG-CCTCA 119
|| |||||||| ||||||||||| ||||||| | ||||||||||||||||| || ||
Sbjct 58 CTAGACCTTAATGAAACCACGTCTTTGAAGCTAAACGTGCCCTTTACATTACCGGCC-CA 116
Query 120 AACCGAACCGGTCTGTATCCTT-CATTGCCATGGAATGATGTGTCTCACCCTCAAAGACA 178
||| ||||| |||||||| ||| | ||||| |||| |||| |||||||||| ||||||||
Sbjct 117 AACTGAACCAGTCTGTATTCTTTC-TTGCCGTGGAGTGATATGTCTCACCCGCAAAGACA 175
Query 179 ACAATGAGTTAGCCATTTGGAAACCTACTTCAA-AAAATTTCAAGAGAGTACCGATGATT 237
||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 176 ACAATGAGTTAGCTATTTGGAAACCTACTTCAACAAAATT-CAAGAGAGTACCGATGATT 234
Query 238 AAACCGGGTCAAACCAAAAATCTTTTGGGATTCGGTTATGATCGGGTTTCTA-ATGATTA 296
|||| |||||||||| ||||||||||||||||||||||||| ||||||| || |||||||
Sbjct 235 AAACGGGGTCAAACCCAAAATCTTTTGGGATTCGGTTATGACCGGGTTT-TAGATGATTA 293
Query 297 CAAAATTGTGACGATTATCGACCAGAAAACCTATATCTTTAGGTTCAAAGAA 348
|||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 294 CAAAATTGTGACGATTATCGACAAGAAAACCTATATCTTTACGTTCAAAGAA 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5