BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473451 Length=843 Score E Sequences producing significant alignments: (Bits) Value AT1G32600.1 | Symbols: | F-box associated ubiquitination effec... 608 2e-173 > AT1G32600.1 | Symbols: | F-box associated ubiquitination effector family protein | chr1:11794802-11795683 FORWARD LENGTH=882 Length=882 Score = 608 bits (329), Expect = 2e-173 Identities = 438/491 (89%), Gaps = 6/491 (1%) Strand=Plus/Plus Query 350 ATTGCTTCTTCAAAGATCGGACCGGTACGGTAT-TGGACCATTGTATGTATTGGATAGCA 408 |||||||||||||||| ||||||||||||| | | ||| |||||||||||||||||||| Sbjct 383 ATTGCTTCTTCAAAGAGAGGACCGGTACGGT-TGTCGACAATTGTATGTATTGGATAGCA 441 Query 409 GACCGGTCCAACAAGGAAAAATCCATCTTATGCTTTGATTTCGTTAATGAAGAGTACTCA 468 |||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 442 AACCGGTTCAACAAAGAAAAATTCATCTTATGCTTTGATTTCGTTAATGAAGAGTACTCA 501 Query 469 AACCTAAAAGTTCCCATGATGCTCTCAGGATTGGAGTTCAATTCATGGTTAGATGTTTCA 528 || ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 502 AAACTAAACGTTCCGATGATGCTATCAGGATTGGAGTTCAATTCATGGTTAGATGTTTCA 561 Query 529 AGGGGACAACTGTGCGTTATCAGTCACTACCCAAGTCTAGAAGACAATTTATGTGTATGT 588 |||||| |||| || ||||||| ||||||||||||| |||| |||||||||||||||||| Sbjct 562 AGGGGAGAACTATGTGTTATCAATCACTACCCAAGTGTAGATGACAATTTATGTGTATGT 621 Query 589 CGCCGAGAAATTAGAAGCGGTTTGAAGATTGTAAGATGGGACAGTGACCCGTGGATGAAT 648 || ||||||||||||||||| |||||||| |||||||| || ||||||||||||||| Sbjct 622 CGACGAGAAATTAGAAGCGGCAAGAAGATTGCGAGATGGGATAGCGACCCGTGGATGAAT 681 Query 649 ATAGCGGGAAATGATGAAGAACCCGTTGATATTAGGTTTGCATGCATAGCAAGAAACAAT 708 |||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||| || Sbjct 682 GTAGCGGGAAACGATGACGAACCCGTTGATATTAGGTTTGTATGCATAGCAAAAAACGAT 741 Query 709 GAAATCTTCATAGTCGTACGATCTCTTAGTGAAGAAGAAGAGGACAAGGTTTTGGTGTAC 768 ||| |||| |||| || |||| || |||| |||||||||||||||| ||||| |||||| Sbjct 742 GAAGTCTTTGTAGTGGTGCGATGTCGTAGTAAAGAAGAAGAGGACAATGTTTTTGTGTAC 801 Query 769 AATAAGGAACAGAACGAGTTCATTAAAGTTCCATTTTCTAGTCGATCGTTTGAAAGTGTT 828 ||||||||||| |||||||||||| ||||| ||||||||||| || || ||||||||| Sbjct 802 AATAAGGAACAAAACGAGTTCATTGAAGTTTTATTTTCTAGTC-AT--TT-GAAAGTGTT 857 Query 829 GGGAAGTATGA 839 |||| |||||| Sbjct 858 GGGATGTATGA 868 Score = 457 bits (247), Expect = 9e-128 Identities = 319/352 (91%), Gaps = 11/352 (3%) Strand=Plus/Plus Query 1 ATGTCGAATCAACAATCATCCTCTCAGCTCATTTCATTGCACAAAGATGGTTTATACCTT 60 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCGAATAAACAATCA---TCTCAGCTCATTTCATTGCACAAAGATGGTTTATACCTT 57 Query 61 CTCGACCTTAACAAAACCACGTCTCTGAAGCTTGATTTGCCCTTTACATTACCG-CCTCA 119 || |||||||| ||||||||||| ||||||| | ||||||||||||||||| || || Sbjct 58 CTAGACCTTAATGAAACCACGTCTTTGAAGCTAAACGTGCCCTTTACATTACCGGCC-CA 116 Query 120 AACCGAACCGGTCTGTATCCTT-CATTGCCATGGAATGATGTGTCTCACCCTCAAAGACA 178 ||| ||||| |||||||| ||| | ||||| |||| |||| |||||||||| |||||||| Sbjct 117 AACTGAACCAGTCTGTATTCTTTC-TTGCCGTGGAGTGATATGTCTCACCCGCAAAGACA 175 Query 179 ACAATGAGTTAGCCATTTGGAAACCTACTTCAA-AAAATTTCAAGAGAGTACCGATGATT 237 ||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 176 ACAATGAGTTAGCTATTTGGAAACCTACTTCAACAAAATT-CAAGAGAGTACCGATGATT 234 Query 238 AAACCGGGTCAAACCAAAAATCTTTTGGGATTCGGTTATGATCGGGTTTCTA-ATGATTA 296 |||| |||||||||| ||||||||||||||||||||||||| ||||||| || ||||||| Sbjct 235 AAACGGGGTCAAACCCAAAATCTTTTGGGATTCGGTTATGACCGGGTTT-TAGATGATTA 293 Query 297 CAAAATTGTGACGATTATCGACCAGAAAACCTATATCTTTAGGTTCAAAGAA 348 |||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 294 CAAAATTGTGACGATTATCGACAAGAAAACCTATATCTTTACGTTCAAAGAA 345 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41091532246 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5