BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473452 Length=1025 Score E Sequences producing significant alignments: (Bits) Value AT1G32610.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 953 0.0 > AT1G32610.1 | Symbols: | hydroxyproline-rich glycoprotein family protein | chr1:11795609-11797141 REVERSE LENGTH=1533 Length=1533 Score = 953 bits (516), Expect = 0.0 Identities = 801/929 (86%), Gaps = 58/929 (6%) Strand=Plus/Plus Query 24 TCAGAATTTGTGGGTTTAGTCT-T-TTG--TGAGATGGATAGGCCTTGTTGGCATAATGA 79 |||||||||||| ||||||||| | ||| ||||||||||||| |||||||| || |||| Sbjct 341 TCAGAATTTGTGAGTTTAGTCTCTCTTGTTTGAGATGGATAGGACTTGTTGGTATTATGA 400 Query 80 TCAGTTAGGTGTGAATAAGATTGGGAAGAACATAAAGAAGAGTCCTTTA-CACCAACC-C 137 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | Sbjct 401 TCAGTTAGGTGTGAATAAGATTGGGAAGAACATAAAGAAGAGTCCTTTACCA-CAACCAC 459 Query 138 AA--TT-T--C-T------C-A--A--TT---GGTATTGTTCAACAGCTAACAGG-TTCT 176 || || | | | | | | || |||||||||||||||| || || |||| Sbjct 460 AAGGTTATAGCATGAGCAACAATGATTTTACAAGTATTGTTCAACAGCTTAC-GGATTCT 518 Query 177 CCATCGCGTGAGAGTTTACCTCAG-C-C-TCAGCAGAATAC--TCG--G--T-TGCAGAA 226 || ||||||||||||||||||||| | | || | |||| | | | | | |||||| Sbjct 519 CCGTCGCGTGAGAGTTTACCTCAGCCTCTTCCTCGGAAT-CTGTTGAAGCCTCAGCAGAA 577 Query 227 GATTGGACCAGTGGCTCAAATACAGATAAACCGGCCCTGTGTTCCTCCTCCTGTTATGGC 286 |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 578 GATTAGACCAGTGGGTCAAATACAGATAAACCGGCCCTGTGTTCCTCCTCCTGTAATGGC 637 Query 287 TCAACCAACTCATGAGTTAGTTGCTAGACCACCAATGCATCCTTTGCCACACGGTTCACA 346 |||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||| Sbjct 638 TCAACCTACTCATGAGTTTGTTGCTAGACCTCCAATGCATCCTTTGCCACATGGTTCACA 697 Query 347 ATCAATTATGGGTCATGGAGACCAATTTGGGTCTAATACAGCTGAGTCTTCTGCCTCGGC 406 | ||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 698 ACCAATTATCAGTCATGGAGACCAGTTTGGGTCTAATACAGCTGAGTCTTCTGTCTCGGT 757 Query 407 GTTTATGTGTTATCGTCAAAGCTCACTAGGAGATTCAGGACCTAATGGTAACCAAATGCA 466 || |||| ||||||||||||||||||| |||||||| |||||||||| ||||||||||| Sbjct 758 GTATATGCGTTATCGTCAAAGCTCACTTGGAGATTCTGGACCTAATGAAAACCAAATGCA 817 Query 467 GCCAACTGATGAGTATCAACAGCAGCCACAGGTGCAAGGTCAAGCTCAACCGCACCCACT 526 |||| || |||| |||||||||||||||||||| ||||||||||| || Sbjct 818 GCCATCTCATGACAATCAACAGCAGCCACAGGTGGAAGGTCAAGCT----------CA-- 865 Query 527 ACTACAATTGCATAATCATCATTCGTTACGGTTCAATGGTTCTGCGCGAGACACACCCAT 586 | | | |||||||||||||||| ||||||||||| |||||| ||| |||||||||| Sbjct 866 A-T-C----GCATAATCATCATTCGCCACGGTTCAATGATTCTGCACGAAACACACCCAT 919 Query 587 TTTGCCAACTCCTAAGTTCGACAGTCCGCCACAACAGATGTATAATAGTAGTCTTCCTTC 646 |||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| Sbjct 920 TTTGCCAACTCCTAAGTTCGACGGTCCGCCACAACAGATGCATAATAATAGTCTTCCTTC 979 Query 647 TCCTAGATTCAACGGTCGTGGGATATTACCCACTCCTACGTCCCAATATCTTGTACAATC 706 |||| ||||||||||||| ||||||||||| ||||| ||||||||||||| | |||||| Sbjct 980 TCCTCGATTCAACGGTCGAGGGATATTACCTACTCCAACGTCCCAATATCGTCCACAATC 1039 Query 707 TCCAACTACGTACCAAAATTTGCTCTCCCCTAGGCCACCTTATTCGCTGCTATCTGCAGG 766 ||||||| | |||| |||||||||||||||||| |||||| | ||||||| ||| |||| Sbjct 1040 TCCAACTGCTTACCGGAATTTGCTCTCCCCTAGGTCACCTTCTCCGCTGCTGTCTACAGG 1099 Query 767 AGTTCAATATCCTCCACCACTAACACCAAGAAGTTATACATTCTCATCAATGTCTCAACC 826 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 1100 AGTTCAATATCCTCCACCACTAACACCAAGAAACTATACATTCTCATCAATGGATCAACC 1159 Query 827 TGGAATTCTCGGTCCAGGCACAATTCCTCTGCCTCCTGCATCTCCATTTGGGGTTTTACC 886 ||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| |||| Sbjct 1160 TGGAATTCTCGGTCCGGGCACAATTCCTCTGCCTCATGCATCTCCGTTTGGGGTTATACC 1219 Query 887 AATCTCTAGTCCAAGATGGAGAGGTTACT 915 ||| ||||||| ||||||||||||||||| Sbjct 1220 AATATCTAGTCAAAGATGGAGAGGTTACT 1248 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50234147000 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5