BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473452
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32610.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 953 0.0
> AT1G32610.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr1:11795609-11797141 REVERSE LENGTH=1533
Length=1533
Score = 953 bits (516), Expect = 0.0
Identities = 801/929 (86%), Gaps = 58/929 (6%)
Strand=Plus/Plus
Query 24 TCAGAATTTGTGGGTTTAGTCT-T-TTG--TGAGATGGATAGGCCTTGTTGGCATAATGA 79
|||||||||||| ||||||||| | ||| ||||||||||||| |||||||| || ||||
Sbjct 341 TCAGAATTTGTGAGTTTAGTCTCTCTTGTTTGAGATGGATAGGACTTGTTGGTATTATGA 400
Query 80 TCAGTTAGGTGTGAATAAGATTGGGAAGAACATAAAGAAGAGTCCTTTA-CACCAACC-C 137
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 401 TCAGTTAGGTGTGAATAAGATTGGGAAGAACATAAAGAAGAGTCCTTTACCA-CAACCAC 459
Query 138 AA--TT-T--C-T------C-A--A--TT---GGTATTGTTCAACAGCTAACAGG-TTCT 176
|| || | | | | | | || |||||||||||||||| || || ||||
Sbjct 460 AAGGTTATAGCATGAGCAACAATGATTTTACAAGTATTGTTCAACAGCTTAC-GGATTCT 518
Query 177 CCATCGCGTGAGAGTTTACCTCAG-C-C-TCAGCAGAATAC--TCG--G--T-TGCAGAA 226
|| ||||||||||||||||||||| | | || | |||| | | | | | ||||||
Sbjct 519 CCGTCGCGTGAGAGTTTACCTCAGCCTCTTCCTCGGAAT-CTGTTGAAGCCTCAGCAGAA 577
Query 227 GATTGGACCAGTGGCTCAAATACAGATAAACCGGCCCTGTGTTCCTCCTCCTGTTATGGC 286
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 578 GATTAGACCAGTGGGTCAAATACAGATAAACCGGCCCTGTGTTCCTCCTCCTGTAATGGC 637
Query 287 TCAACCAACTCATGAGTTAGTTGCTAGACCACCAATGCATCCTTTGCCACACGGTTCACA 346
|||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 638 TCAACCTACTCATGAGTTTGTTGCTAGACCTCCAATGCATCCTTTGCCACATGGTTCACA 697
Query 347 ATCAATTATGGGTCATGGAGACCAATTTGGGTCTAATACAGCTGAGTCTTCTGCCTCGGC 406
| ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 698 ACCAATTATCAGTCATGGAGACCAGTTTGGGTCTAATACAGCTGAGTCTTCTGTCTCGGT 757
Query 407 GTTTATGTGTTATCGTCAAAGCTCACTAGGAGATTCAGGACCTAATGGTAACCAAATGCA 466
|| |||| ||||||||||||||||||| |||||||| |||||||||| |||||||||||
Sbjct 758 GTATATGCGTTATCGTCAAAGCTCACTTGGAGATTCTGGACCTAATGAAAACCAAATGCA 817
Query 467 GCCAACTGATGAGTATCAACAGCAGCCACAGGTGCAAGGTCAAGCTCAACCGCACCCACT 526
|||| || |||| |||||||||||||||||||| ||||||||||| ||
Sbjct 818 GCCATCTCATGACAATCAACAGCAGCCACAGGTGGAAGGTCAAGCT----------CA-- 865
Query 527 ACTACAATTGCATAATCATCATTCGTTACGGTTCAATGGTTCTGCGCGAGACACACCCAT 586
| | | |||||||||||||||| ||||||||||| |||||| ||| ||||||||||
Sbjct 866 A-T-C----GCATAATCATCATTCGCCACGGTTCAATGATTCTGCACGAAACACACCCAT 919
Query 587 TTTGCCAACTCCTAAGTTCGACAGTCCGCCACAACAGATGTATAATAGTAGTCTTCCTTC 646
|||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||
Sbjct 920 TTTGCCAACTCCTAAGTTCGACGGTCCGCCACAACAGATGCATAATAATAGTCTTCCTTC 979
Query 647 TCCTAGATTCAACGGTCGTGGGATATTACCCACTCCTACGTCCCAATATCTTGTACAATC 706
|||| ||||||||||||| ||||||||||| ||||| ||||||||||||| | ||||||
Sbjct 980 TCCTCGATTCAACGGTCGAGGGATATTACCTACTCCAACGTCCCAATATCGTCCACAATC 1039
Query 707 TCCAACTACGTACCAAAATTTGCTCTCCCCTAGGCCACCTTATTCGCTGCTATCTGCAGG 766
||||||| | |||| |||||||||||||||||| |||||| | ||||||| ||| ||||
Sbjct 1040 TCCAACTGCTTACCGGAATTTGCTCTCCCCTAGGTCACCTTCTCCGCTGCTGTCTACAGG 1099
Query 767 AGTTCAATATCCTCCACCACTAACACCAAGAAGTTATACATTCTCATCAATGTCTCAACC 826
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1100 AGTTCAATATCCTCCACCACTAACACCAAGAAACTATACATTCTCATCAATGGATCAACC 1159
Query 827 TGGAATTCTCGGTCCAGGCACAATTCCTCTGCCTCCTGCATCTCCATTTGGGGTTTTACC 886
||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| ||||
Sbjct 1160 TGGAATTCTCGGTCCGGGCACAATTCCTCTGCCTCATGCATCTCCGTTTGGGGTTATACC 1219
Query 887 AATCTCTAGTCCAAGATGGAGAGGTTACT 915
||| ||||||| |||||||||||||||||
Sbjct 1220 AATATCTAGTCAAAGATGGAGAGGTTACT 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50234147000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5