BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473453
Length=757
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32630.1 | Symbols: | unknown protein; Has 18 Blast hits to... 821 0.0
> AT1G32630.1 | Symbols: | unknown protein; Has 18 Blast hits
to 18 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 2; Fungi - 2; Plants - 12; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr1:11797335-11798602 FORWARD
LENGTH=869
Length=869
Score = 821 bits (444), Expect = 0.0
Identities = 599/670 (89%), Gaps = 25/670 (4%)
Strand=Plus/Plus
Query 1 AGAAAGATACCTCTTTTCATCAATTTTTAG--ACAACAAAGAACAATCTCTCTCTTTCTC 58
|||||| |||||| |||||||||| | ||| | ||||||||||||||||||||||||||
Sbjct 31 AGAAAGGTACCTCCTTTCATCAATCTATAGTCAGAACAAAGAACAATCTCTCTCTTTCTC 90
Query 59 CTTCATAAAACTTGAAAACCCACTCGAGCAAGAAGAGAACCGACTCAGGCAATCGCTACT 118
|||||||| || |||| |||||||||||||||||||||||| || ||||||||| | |
Sbjct 91 GTTCATAAATCTCCAAAA-CCACTCGAGCAAGAAGAGAACCGAGTCGGGCAATCGCAAAT 149
Query 119 TTAGTTTCTTTGTTCACCGAAG-TTCAAAGTGTTTTGAGTAATGGGAATTGAAGGAGAGA 177
||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| |||
Sbjct 150 TTAGTTTCTTTGTTCACTGAAGCTTCAAAGTGTTTTGAGTAATTGGAATTGAAGGAAAGA 209
Query 178 TGAGTAATGGTGGTTTGAGCGTTGATGAGAAAGAAGGGTTGATAGACAAAGATGAAGTCT 237
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 210 TGAGCAATGGTGGTTTGAGCATTGATGAGAAAGAAGGGTTGATAGACAAAGATGAAGTCA 269
Query 238 TGCTCCGTCGAATGAAGAATC-GAGAAAGACAACGTAGGTATAGAGCAAGGAAACGGATG 296
|| |||||||||||||||| | |||||||||||||||||||| |||| ||||||||||||
Sbjct 270 TGATCCGTCGAATGAAGAA-CAGAGAAAGACAACGTAGGTATCGAGCCAGGAAACGGATG 328
Query 297 CGGGAAGAAGAAGCGGGTATCGATGATTATCTGTCGTTTGAGACAATGGGACAACA-G-- 353
||||||||||||||||||| ||||||| |||| |||||||||||||||||| |||| |
Sbjct 329 CGGGAAGAAGAAGCGGGTAACGATGATAATCTTTCGTTTGAGACAATGGGAAAACAAGAA 388
Query 354 GAAGAAGAAGA-G--GA--A----CTAGAGTTTAATGGACCTAGTGGTTATGTTGAGAAC 404
||||||||||| | || | ||||||||||||||||||||||||||||||||||||
Sbjct 389 GAAGAAGAAGAAGAAGACGAGGGACTAGAGTTTAATGGACCTAGTGGTTATGTTGAGAAC 448
Query 405 TTTGTGCGGCGTGTTTATTGCGATAGAGATTGGAAAAAAGAGGCTAGAAGAGCTCATTTG 464
||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 449 TTTGTGCGGCGGGTTTATTGCGATAGAAATTGGAAAAAAGAAGCTAGAAGAGCTCATTTG 508
Query 465 TTTATGAACAAGGCTCAAGATGGTTCTTGTGAGTCGGTTAAATGGAAGATAAGGCGGCAT 524
|||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 509 ATTATGAACAAGGCTCAAGATAGTTCTTGTGAGTCGGTTAAACGGAAGATAAGGCCGCAT 568
Query 525 GGAAGAGATTGGAAAGCTGAAGCTAGAAAAAAGAAAACTTGATTCTTGAGGATTGGTTTG 584
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 569 CGTCGAGATTGGAAAGCTGAAGCTAGAAAGAAGAAAACTTGATTCTTGAGGATTGGT--- 625
Query 585 GTCAGGTTGCTAGAGTATCTTGCGAAGTTGTT-GAGGATGAGAATCCACTAGCAAAACAG 643
||||||||||||| ||||||||| || | | ||||| |||||| ||| | |||| |||
Sbjct 626 --CAGGTTGCTAGAGGATCTTGCGAGGT-GATCGAGGAAGAGAATGCACAAACAAAGCAG 682
Query 644 ATTTGAGATT 653
|||| |||||
Sbjct 683 ATTTCAGATT 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36771395604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5