BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473458
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32730.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 1620 0.0
> AT1G32730.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: 12 plant structures; EXPRESSED DURING:
6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown
function DUF702 (InterPro:IPR007818); Has 120 Blast hits
to 118 proteins in 39 species: Archae - 0; Bacteria - 8; Metazoa
- 63; Fungi - 4; Plants - 33; Viruses - 0; Other Eukaryotes
- 12 (source: NCBI BLink). | chr1:11840910-11843257 FORWARD
LENGTH=1452
Length=1452
Score = 1620 bits (877), Expect = 0.0
Identities = 1143/1264 (90%), Gaps = 47/1264 (4%)
Strand=Plus/Plus
Query 1 GAGAGCACTTCGCAAAATCAGAGCGAC-aaaaaaattaaaaaCCAATCCTTTCGATTCCA 59
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 14 GAGAGCACTTCGCAAAATCAGAGCGACAAAAAAAAATAAAAACCAATCCTTTCGATTCCA 73
Query 60 AA-ATTTTG-T--T-ACT----C--------TTTGGTCGTTAGCTT-TCTCTTTCG-TCA 100
|| ||||| | | ||| | |||||||||||| || ||||||||| | |
Sbjct 74 AATTTTTTGTTACTCACTCGCACGAGTTTTATTTGGTCGTTAG-TTATCTCTTTCGTTGA 132
Query 101 ATAACGGTTTTAATTTAGACCGTTAATGAAGAAGAAAGATGGCGTCGTCACCGTCTCTGA 160
||||||||||||||||| ||||||| | | || | | | ||||||||||||||||
Sbjct 133 ATAACGGTTTTAATTTAAACCGTTACTTTTTATCAATGGCGACTTCGTCACCGTCTCTGA 192
Query 161 GTAACAATGGTCTTTCCTCCGTCGTCACGCCTCCTAAGACTCTCCGTGGTCTCAATAAGC 220
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 193 GTAACAATGGTCTTTCCTCCGTCGTCACGCCTCCCAAAACTCTCCGTGGTCTCAATAAGC 252
Query 221 CTAAGTGTATTCAATGCGGCAACGTCGCTCGCTCCAGGTGTCCATTTT-ATTCTTGTAAG 279
|||||||||||||||||||||| || |||||||||||||| || |||| | |||||||||
Sbjct 253 CTAAGTGTATTCAATGCGGCAATGTAGCTCGCTCCAGGTG-CCCTTTTCAATCTTGTAAG 311
Query 280 GGTTGTTGTTCAAGAGCAGAGAA-CCCTTGCCCGATTCACGTTCTTAAAGTAGCTTCAAC 338
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 312 GGTTGTTGTTCAAGAGCAGAGAATCCC-TGCCCGATTCACGTTCTTAAAGTAGCTTCAAC 370
Query 339 TTCTGGTGAGAAGACGCAGGCGCCAAGTACTCCATCATCAGAGCAGAAAGCATCCGAGGG 398
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 371 GTCTGGTGAGAAGACGCAGGCGCCAAGTACTCCATCTTCAGAGCAGAAAGCAACCGAGGG 430
Query 399 CACTCCTGGGAGTACAACTAGAGTTTCGTCCATCCGCCAACTTTCTAGCAACTTTGCTCA 458
|||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 431 CACTCCCGGGAGTACCACTAGAGTTTCGTCAATCCGGCAACTTTCTAGCAACTTTGCTCA 490
Query 459 GTTTAATAACCTGAATGCTTCTTCCCGCCAGAGAAAACCTTTGACGATAAAGGATGCACA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 491 GTTTAATAACCTGAATGCTTCTTCCCGCCAGAGAAAACCTTTGACGATAAAGGATGCTCA 550
Query 519 AGCTTTAAACGAGTGGCGGTTTACAAAGCTAAAAGAGTTCAGAGACCGAAACATTGAAGT 578
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 551 AGCTTTAAACGAGTGGCGGTTTACAAAGCTAAAAGAGTACAGAGACAGAAACATTGAAGT 610
Query 579 AGAAAATGAAGCTTTTGATCGGTACATGAGTAATGTGAATTTACTCGAAGAAGCATTTTC 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 AGAAAATGAAGCTTTTGATCGGTACATGAGTAATGTGAATTTACTCGAAGAAGCATTTTC 670
Query 639 ATTTACATCTGTTCCTGATGAAGAG-GTTCATGGAGCAGCAGCTTCTGAGCTAAACAACG 697
||||||||||||||||||||||||| || |||||| |||||||| |||||| |||||| |
Sbjct 671 ATTTACATCTGTTCCTGATGAAGAGAGT-CATGGAACAGCAGCTCCTGAGCAAAACAAAG 729
Query 698 AGGAAAGTATTGTTTCAGAGCTTAAACTGAGGCTGAGATCGAACTCCGCAAGAACAGAGA 757
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 730 AGGAAAATATTGTTTCAGAGCTTAAACTGAGGCTGAGATCGAACTCTGCAAGAACAGAGA 789
Query 758 GCTTCAAGAAGAGGATCGCAGAGACTGTCAAAGCCGGTTTGGTGAAGCTTAAGAGACCGG 817
|||| |||||| ||||||| ||||| ||||||||||||||||||||||||||||||| ||
Sbjct 790 GCTTTAAGAAGCGGATCGCGGAGACAGTCAAAGCCGGTTTGGTGAAGCTTAAGAGACTGG 849
Query 818 ATATAGGCAGTTCTTCAGATGATCAAGATGAAATCAAAAGGCGGATCAAAAGAA-GTAAA 876
|| |||||||||||||||||||||||||||| |||||||||||| ||||||||| | |||
Sbjct 850 ATTTAGGCAGTTCTTCAGATGATCAAGATGATATCAAAAGGCGGGTCAAAAGAAAG-AAA 908
Query 877 TGGGAAGAGAAAGGTTCAGCTTTGAATGATATAATCGATAAACTGAACAAAGCAAGAACC 936
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 909 TGGGAAGAGAAAGGTTCAGCTTTGAATGAAATAATCGATAAACTGAACAAAGCAAGAACC 968
Query 937 GAAGAGGATCTCAAATCTTGCTTAGAGATGAAATCAAAGCTCTGTGGTCATGTTTCTTCC 996
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 969 GAAGAGGATCTCAAATCTTGCTTAGAGATGAAATCAAAGCTCTGTGGTCAAGTTTCTCCC 1028
Query 997 ACTGCTACTTCCGAGGAGAACAAGGTTTTTCCTGATACT-GTCCGAGAAGTTGAGATGAG 1055
|||||| |||||||| |||||||| | ||||| | | | |||||| |||||||||||||
Sbjct 1029 ACTGCTGCTTCCGAGAAGAACAAGATCTTTCCGGGTG-TAGTCCGAAAAGTTGAGATGAG 1087
Query 1056 CGAAGATGCACTTCAAAGAATCGCGGAGAGTCTCCAATCTTTTGACAGAGT-GGAAATGT 1114
||||| |||||||||| |||||| |||| ||||||||||||||||| ||| |||| |||
Sbjct 1088 TGAAGAAGCACTTCAAAAAATCGCTGAGAATCTCCAATCTTTTGACAAAGTTGGAA-TGT 1146
Query 1115 TGTGAAGTCGAGAACATCC-----A--AA--G-----TTTGTGTGGCGAGAAAAACTCAA 1160
||||||||||||||||||| | || | |||| ||||| |||||| || |
Sbjct 1147 TGTGAAGTCGAGAACATCCTGTGGATGAACTGAAAAGTTTGAGTGGCAAGAAAATTTCTA 1206
Query 1161 GATCTTTTGTGATCGCGGTATTGTACAATGATCAACCATCCCTCAAAACTGATCTTGAAG 1220
|||| || |||| | |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1207 GATCCTTCGTGACCACGGTATTGTACAATGATCAAACATCCCTCAAAACTGATCCTGAAG 1266
Query 1221 ACTC 1224
||||
Sbjct 1267 ACTC 1270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5