BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473461
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32760.1 | Symbols: | Glutaredoxin family protein | chr1:11... 1565 0.0
> AT1G32760.1 | Symbols: | Glutaredoxin family protein | chr1:11858211-11859292
FORWARD LENGTH=1082
Length=1082
Score = 1565 bits (847), Expect = 0.0
Identities = 989/1055 (94%), Gaps = 20/1055 (2%)
Strand=Plus/Plus
Query 1 AATCCTCGAAATCTCCGGCGATGGGTGGTTGCGTCTCCTCCAACCTCCTTAATCCGACCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 21 AATCCTCGAAATCTCCGGCGATGGGTGGTTGCGTCTCCTCCAACCTCCTTACTCCGACCG 80
Query 61 ATGACAACAACTTCTCTCACCTCACCAGCTCCTCCTTAAGCCACCATTTCGTCAAGCTAA 120
|||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 81 ATGACAGCAGCTTCTCTCACCTCACCAGCTCCTCCTTAAGCCAACATTTCGTCAAGCTAA 140
Query 121 CTTCCACCACTTACGGTCTTCTCAATCTCGA--C-TCTTCAcctcctccgccgcctcc-t 176
||||||||||||||||||||||||||||||| | ||||||||| |||| ||| |||| |
Sbjct 141 CTTCCACCACTTACGGTCTTCTCAATCTCGACTCTTCTTCACCTTCTCCTCCGTCTCCTT 200
Query 177 --tcctcctccgccgctacctccgctat-atcgccgatgactccgcctGAGAGATTCACT 233
||||||||| |||| | |||| ||| | |||| ||||||||||||||||||||||||
Sbjct 201 CCTCCTCCTCCTCCGCCAAATCCGTTATCA-CGCCAATGACTCCGCCTGAGAGATTCACT 259
Query 234 ATCAACGGTAAGGAGGCGGC---GATGATGGTTAAGTCTGAGCCGACGACGGAGGTTATT 290
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 260 ATCAACGGTAAGGAGGCGGCGATGATGATGGTTAAGTCTGAGCCGACGACGGAGGTTATT 319
Query 291 AACTTCTGGGAGCTAATGTCAGGTCTCGACGGCGATACTTGTCGATTCTCTCCGATTCCG 350
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 320 AACTTCTGGGAGCTAATGTCAGGTTTAGACGGCGATACTTGTCGATTCTCTCCGATTCCG 379
Query 351 GTGAAATGTGATGTCTTTTCCGGCGGATTAAACAAAGAGAACTCCGATCCTAATTTGATA 410
||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 380 GTGAAATGTAATGGATTTTCCGGCGGATTAAAGAAAGAGAACTCCGATCCTAATTTGAAA 439
Query 411 AACCCTAACGATTACGAGGTTTTGAAACCGTTAGATCCGAAACTAGCGGAGGAATCTGAG 470
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 440 AACCCTAACGATTACGAGGTTTTGAAACCGTTAGATCCGAAATTAGCGGAGGAATCTGAG 499
Query 471 AAATTGTGTGACGGCGGAGAGAATCGCGTTGTGATTTACACGACGTCGTTGCGCGGTGTG 530
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 500 AGGTTATGTGACGGCGGAGAGAATCGCGTTGTGATTTATACGACGTCGTTGCGCGGTGTT 559
Query 531 CGACGGACGTTTGAGGCGTGTAACGCCGTTAGAGCTGCGATTGAGAGTTTTGGTGTAGTG 590
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 560 CGACGGACGTTTGAGGCGTGTAACGCCGTGAGAGCTGCGATTGAGAGTTTTGGTGTAGTG 619
Query 591 ATTTGTGAGAGAGATGTGTCAATGGATAGAGGATTTAGAGAAGAGTTATCGAATCTCATG 650
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 620 GTTTGTGAGAGAGATGTGTCAATGGATAGAGGATTTAGAGAAGAGTTATCCAATCTAATG 679
Query 651 GCGGTAGATTCGA---CAGCGGTGTTGCCGCCTCGGGTTTTCGTGAAGGGGAAGTACATT 707
|||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 680 GCGGTAGAATCGACGGCGGCGGTGTTGCCGCCTCGGGTTTTTGTGAAGGGGAAGTACATT 739
Query 708 GGTGGAGCAGAGGAAGTGATGAGATTGGTGGAAGAAGGATTGCTTGGTGAATTGCTTAAA 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 GGTGGAGCAGAGGAAGTGATGAGATTGGTGGAAGAAGGATTGCTTGGTGAATTGCTTAAA 799
Query 768 GGGATTCCGAAGAAGAAAGATCGGTGTGGCGGCGGTTGCGATGGTTGCGGCGGATTAGCG 827
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 800 GAGATTCCGAGGAAGAAAGATCGGTGTGGCGGCGGTTGCGGTGGTTGCGGCGGATTAGCG 859
Query 828 TTTTTGCCGTGTTCGGGTTGTAATGGAAGCTGTAAAGTGGTGGAAGGATGGGGTAATGAG 887
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 860 TTTTTGCCGTGTTCGGGTTGTAATGGAAGCTGTAAAGTGGTGGAAGGATGGGGGAATGAT 919
Query 888 GCTGTAGTGGTGAAGTGTATGGCGTGTAATGAGAATGGTCTTGTTCGTTGTCCGATTTGC 947
|| || ||||||||||||| || |||||||||||||||||||||||||||||| || |||
Sbjct 920 GCAGTGGTGGTGAAGTGTAAGGAGTGTAATGAGAATGGTCTTGTTCGTTGTCCAATATGC 979
Query 948 AGCTAAA--A-CAATACACTAGTAATAATCTCGAATTTGGAATCATATATCTAATACTAC 1004
||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 980 AGCTAAATCAACAATACACTAGTAATAATCTCAAATTTGGAATCATATATCTAATACTAC 1039
Query 1005 TACTACTACTGTTAGAGTCTATCTGTGTCAAGATT 1039
|||||||| | | ||||||| ||||||||||||||
Sbjct 1040 TACTACTA-T-T-AGAGTCTCTCTGTGTCAAGATT 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50937425058
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5