BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473464
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32780.1 | Symbols: | GroES-like zinc-binding dehydrogenase... 2159 0.0
> AT1G32780.1 | Symbols: | GroES-like zinc-binding dehydrogenase
family protein | chr1:11869825-11872926 REVERSE LENGTH=1668
Length=1668
Score = 2159 bits (1169), Expect = 0.0
Identities = 1364/1455 (94%), Gaps = 26/1455 (2%)
Strand=Plus/Plus
Query 80 ATTTGAGATTAGCATTATGATGGTTTATGTAAAGAGATTGGTCATATCAATCTTATCAAA 139
|||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 126 ATTTGAGATTCGCATTACGATGGTTTATGTAAAGAGATTGGTTATATCAATCTTATCAAA 185
Query 140 GCCACCTCTCTCGGGATTATTGACTCGATTTGGATATTTATACATGTGACTATATTTAGA 199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CCCACCTCTCTCGGGATTATTGACTCGATTTGGATATTTATACATGTGACTATATTTAGA 245
Query 200 CATATATAGATCTGAATTCTGTATATATATAGATCTACATTCAT---A-AAAGA-C-AA- 252
|||| |||||||| | | ||| |||||||||| |||||||||| | ||||| | ||
Sbjct 246 CATACATAGATCTCAGTCCTG--TATATATAGAGCTACATTCATAAAAGAAAGATCTAAC 303
Query 253 AT--C---------TAA--ATCAAGAAGATGGCAGAGACTCAAGGGAAGGTCATCACTTG 299
|| | || |||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 304 ATAACAAAAGGAAAAAAGCATCAAGAACATGGCGGAGACTCAAGGAAAGGTCATCACTTG 363
Query 300 CAAAGCTGCTGTCGTATGGGGTCCAAAAGAACCGCTTGTAATACAAGAAATATGTGTGGA 359
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 364 TAAAGCTGCTGTCGTATGGGGTCCAAAAGTGCCGCTTGTAATTCAAGAAATATGCGTCGA 423
Query 360 TCCTCCTCAGAAAATGGAAGTCCG-GCTCAAAATCCTTTACTCTTCCATTTGCCACACCG 418
|||||||||||||||||||||||| | | ||||| |||||||| ||||||||||||||||
Sbjct 424 TCCTCCTCAGAAAATGGAAGTCCGTG-TTAAAATTCTTTACTCCTCCATTTGCCACACCG 482
Query 419 ATCTCGGATGTTGGAACGGCACGAACGAAGCTGAACGAGCATTTCCAAGGATTCTTGGTC 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 483 ATCTCGGATGTTGGAACGGCACGAACGAAGCTGAACGAGCATTTCCAAGGATTCTTGGCC 542
Query 479 ATGAAGCTGTCGGGATTGTAGAGAGTGTTGGAGAAGGAGTAAAAGATGTGAAAGAAGGAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 ATGAAGCTGTCGGGATTGTAGAGAGTGTTGGAGAAGGAGTAAAAGATGTGAAAGAAGGAG 602
Query 539 ACTATGTGATTCCGACTTTCAATGGAGAATGTGGTGAATGTAAAGTGTGTAAGAGAGAAG 598
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ACTACGTGATTCCGACTTTCAATGGAGAATGTGGTGAATGTAAAGTGTGTAAGAGAGAAG 662
Query 599 AGAGTAATCTCTGTGAGCGATATCATGTGGATCCTATGAAGAGAGTGATGGTGAGTGATG 658
| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 663 AAAGTAATCTCTGTGAGCGATATCATGTGGATCCTATGAAGAGGGTGATGGTGAATGATG 722
Query 659 GAGCGACGAGATTCTCAACCACCACAGACAAGGACGGTCGCTCAAGCCAGAGCCAACCCA 718
||| |||||||||||||||||||| | ||||||||||| | || ||||| |||||||| |
Sbjct 723 GAGGGACGAGATTCTCAACCACCATAAACAAGGACGGTGGTTCGAGCCAAAGCCAACCTA 782
Query 719 TATATCATTTCCTTAACACCTCCACGTTCACCGAATACACCGTCTTGGACTCGGCTTGTG 778
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 783 TATATCACTTCCTTAACACCTCCACGTTCACCGAATACACTGTCTTGGACTCGGCTTGCG 842
Query 779 TCGTCAAGATCGATCCTAATGCTCCTCTCAAGCAAATGAGCCTCTTGAGCTGTGGTGTCT 838
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 843 TCGTCAAGATCGATCCTAATTCTCCTCTCAAGCAAATGAGCCTCTTGAGTTGTGGTGTCT 902
Query 839 CAACTGGGGTTGGAGCAGCTTGGAACATTGCAAAAGTGAAGGAAGGAACAAGCACTGCTG 898
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 903 CAACTGGGGTTGGAGCAGCTTGGAACATTGCAAATGTGAAGGAAGGAAAAAGCACTGCTG 962
Query 899 TCTTTGGATTGGGTTCTGTTGGACTCGCTGTTGCTGAAGGTGCAAGAGCAAGAGGAGCTT 958
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 963 TCTTTGGATTGGGTTCCGTTGGACTCGCTGTTGCTGAAGGTGCAAGAGCTAGAGGAGCTT 1022
Query 959 CTAGGATCATTGGTGTTGATGCTAATGCTTCCAAATTTGAGAAAGGTAAGCTGATGGGAG 1018
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1023 CTAGGATCATTGGTGTTGATGCTAATGCTTCCAAATTTGAGAAAGGTAAACTGATGGGAG 1082
Query 1019 TAACAGACTTCATAAACCCAAAAGACTTAACTAAGCCAGTACATCAGATGATACGAGAAA 1078
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1083 TAACAGATTTCATAAACCCTAAAGACTTAACTAAGCCAGTACATCAGATGATACGAGAGA 1142
Query 1079 TAACGGGAGGAGGCGTGGACTATAGCTTCGAATGCACAGGAAACGTTGATGTTCTTCGCG 1138
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1143 TAACGGGAGGAGGCGTGGACTATAGCTTTGAATGTACAGGAAACGTTGATGTTCTTCGCG 1202
Query 1139 AAGCCTTTTTATCCACTCACGTCGGTTGGGGATCAACGGTACTTGTGGGGATCTATCCGA 1198
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1203 AAGCCTTTTTATCCACTCACGTCGGTTGGGGATCGACAGTACTTGTTGGGATCTATCCGA 1262
Query 1199 CGCCAAGAACATTGCCTCTTCATCCAATGGAGCTTTTCGACGGTCGTTCAATCATCGGTT 1258
|||||||||||||||||||||| |||||||||||||||||||| ||| ||||| |||||
Sbjct 1263 CGCCAAGAACATTGCCTCTTCACCCAATGGAGCTTTTCGACGGCCGTAGAATCACCGGTT 1322
Query 1259 CTGTTTTTGGCGGTTTCAAGCCCAAATCTCAACTTCCAAATTTCGCCCAACAATGCATGA 1318
|||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1323 CTGTGTTTGGTGGCTTCAAGCCCAAATCTCAGCTTCCAAATTTCGCCCAACAATGCATGA 1382
Query 1319 AAGGGGTTGTGAAATTGGAACCTTTTATTACCAATGAGCTTCCATTTGAGAAGATAAACG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 AAGGGGTTGTGAAATTGGAACCTTTTATTACCAATGAGCTTCCATTTGAGAAGATAAACG 1442
Query 1379 ATGCGTTTCAGCTGCTTCGCGATGGAAAATCTCTTCGATGCATTCTCCAAATCTCTAAA- 1437
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1443 ATGCGTTTCAGCTGCTTCGCGATGGAAAATCTCTTCGGTGCATTCTTCAAATCTCTAAAC 1502
Query 1438 TTACTCAAGAGATGATTCTACACATTCACAAAGTTTACTACACTATATATAATTTACCCA 1497
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 TT-CTCAAGAGATGATTCTACACATTCACAAAGTTTACTACACTATATATAATTTACCCA 1561
Query 1498 ACAAACGCTTATTTT 1512
|||||| ||||||||
Sbjct 1562 ACAAACACTTATTTT 1576
Score = 119 bits (64), Expect = 9e-26
Identities = 78/84 (93%), Gaps = 3/84 (4%)
Strand=Plus/Plus
Query 1 AAATCTTATGTGAAGATAGTA--GTTTTAATTTATGCATGAAATATAA-GTTAGTTGGAG 57
||||||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||
Sbjct 1 AAATCTTATGTGAAGATAGTATAGTTTAAATTTTTGCATGAAATATAAAGTTAGTTGGAG 60
Query 58 CACAAACAAAATTTAATATACCAT 81
|||||||||||||||| |||||||
Sbjct 61 CACAAACAAAATTTAAGATACCAT 84
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74598009870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5