BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473465
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1... 2298 0.0
AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting ... 553 2e-156
> AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1:11874704-11877387
REVERSE LENGTH=1744
Length=1744
Score = 2298 bits (1244), Expect = 0.0
Identities = 1580/1728 (91%), Gaps = 80/1728 (5%)
Strand=Plus/Plus
Query 1 ATCACCGAtcttctgattaatcactctttaatcctctctttatttcctttttctctctct 60
|||||||||| |||||||||||||||||||||| ||||||||||| || | |||||||||
Sbjct 1 ATCACCGATCCTCTGATTAATCACTCTTTAATCGTCTCTTTATTT-CTCTCTCTCTCTCT 59
Query 61 tc-tctttcttcttcttcctcctcGAGAGCACCTTATGCTGATTCCTATCTTTTTCTTCC 119
|| || |||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 60 TCTTC-TTCTTCTTCTTCCTCC-AGAGAGCACCTTATGCTGATTCCTCTCCTTTTCTTCC 117
Query 120 TCAAATCATAAAACCCGATCGGCCGATTCCTTCTCAATTATCCTT-AAATTTCCGATTTT 178
|||| |||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||
Sbjct 118 TCAACTCAT-AAACCCGATCGGCCGATTCCTTCACAATTATCCTTAAAATTTTCGATTTT 176
Query 179 GA-TATCTGGGTTTCTCTCTGATCATGGCGGTTGTTGAGACTGGAGCAGCTGCTACTGCT 237
|| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 177 GATTAT-TGGGTTTCTCTCTGATCATGGCGGTTGTTGAGACTGGAGCAGCAGCTACTGCT 235
Query 238 GCTGACGCAGGAGGAGTCGTGATCCAGCCGCCGCCTTCTTCTCCACCTTCTTCAATGACA 297
||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 236 GCTGATGCAGGAGGAGTCGTGATCCAGCCGCCGCCGTCTTCACCACCATCTTCAATGACT 295
Query 298 AGTCAAGATTCCGGCGTTTCTTCCGATGATCAGAACCATCACTCTAGGATCGATCAAGTT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AGTCAAGATTCCGGCGTTTCTTCCGATGATCAGAACCATCACTCTAGGATCGATCAAGTT 355
Query 358 CTTCGGCACGATCAAGGTGGTGTTGGTCTCTACAGCAAGATCGGGTCACACGTGGCGAGA 417
|| |||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 356 CTCCGGCACGATCAA---------GGTCTTTACAGCAAGATCGGGTCACACGTGGCGAGA 406
Query 418 TCCGACGGCGTTGACGGTGGTGAGAGCTTTAAGCGTGATATGAGAGAGCTTCAGGAGCTT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 TCCGACGGCGTTGACGGTGGTGAGAGCTTTAAGCGTGATATGAGAGAGCTTCAGGAGCTT 466
Query 478 TTCTCTAAGCTTAATCCTATGGCTGAAGAGTTTGTTCCTCCTTCTCTGACTAAACAAGGA 537
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 467 TTCTCTAAGCTTAATCCTATGGCTGAAGAGTTTGTTCCTCCTTCTCTGAATAAAC----- 521
Query 538 GGTAACGGAGGACTTAACGGTGTTAATGGTGGTTTCTTCACTTCTGCTGGTTCCTTCTTC 597
|| ||||| |||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 522 ---AA-GGAGG---TAACGGTGTTAACGGTGGTTTCTTCACCTCTGCTGGTTCCTTCTTC 574
Query 598 CGTAACAATGGCTTCT-CTGGTACTGGAAATGGTGGCTACGGTAATGAAAACGGTGGTTT 656
|| ||||||||||| | ||||||| |||||||| || |||||||| ||||||||||||||
Sbjct 575 CGCAACAATGGCTT-TGCTGGTACCGGAAATGGCGGATACGGTAACGAAAACGGTGGTTT 633
Query 657 TCGTCGGAAGAAGAGCTTTGGTCAAGGGAAACGAAGGATGAATGCTCGAACAAGCATGGC 716
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 CCGACGGAAGAAGAGTTTTGGTCAAGGGAAACGAAGGATGAATGCTCGAACAAGCATGGC 693
Query 717 TCAACGAGAAGATGTTATCCGTAGAACCGTCTATGTCTCTGATCTCGATCAACAGGTCAC 776
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 694 TCAGCGAGAAGATGTTATCCGTAGAACCGTCTACGTCTCTGATCTCGATCAACAGGTCAC 753
Query 777 TGAAGAGCAGCTTGCTGGTTTGTTTGTGAGCTGTGGACAGGTTGTTGACTGTCGCATATG 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TGAAGAGCAGCTTGCTGGTTTGTTTGTGAGCTGTGGACAGGTTGTTGACTGTCGCATATG 813
Query 837 TGGTGACCCAAACTCAGTGCTTCGGTTTGCATTCATTGAGTTCACTGATGAAGAGGGTGC 896
|||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 814 CGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGAGGGTGC 873
Query 897 AATGACTGCTCTGAATTTATCGGGGACTATGTTGGGATTTTATCCTGTGAAAGTTCTGCC 956
||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 874 GATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATCCTGTGAAAGTTTTACC 933
Query 957 ATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCCCAGGACTGAAGATGAGCG 1016
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 934 ATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCCTAGGACTGAAGATGAGCG 993
Query 1017 TGAGATGTGTGCGAGAACTATCTACTGTACTAACATTGACAAGAAGGTGACTCAATCAGA 1076
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 994 TGAGATGTGTGCAAGAACTATCTACTGTACTAACATAGACAAGAAGGTGACTCAATCAGA 1053
Query 1077 TGTGAAGATCTTCTTCGAATCCTTCTGCGGAGAGGTTTATCGCCTGAGGCTTCTTGGAGA 1136
||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1054 CGTGAAGATCTTTTTTGAGTCCTTCTGCGGAGAGGTTTATCGCCTGAGGCTGCTTGGAGA 1113
Query 1137 TTACCAACACTCGACTCGAATTGCTTTTGTAGAGTTCGTAATGGCAGAAAGTGCAATAGC 1196
||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1114 TTATCAACACTCGACTCGTATTGCTTTTGTAGAGTTCGTAATGGCGGAAAGCGCAATAGC 1173
Query 1197 GGCTCTCAACTGCAGCGGAGTTGTTCTTGGTTCTTTACCAATAAGGTCAGGTGAGTCCTT 1256
|||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||
Sbjct 1174 TGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCTTTACCTATAAGGTCA--T----CCTT 1227
Query 1257 CAAAGACGCCTGTTCGTCCGAGATCACCGAGGCATCCAATGCATTGATCTTAGCTT-ACA 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1228 CAAAGACGCCTGTTCGTCCGAGATCACCGAGGCATCCAATGCATTGATCTTAGCTTTACA 1287
Query 1316 GGTTTTCACATATCTCGTGTCTC---AATATATATATCGCTGTCTCGTCTTAAAA-CAGC 1371
|||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1288 GGTTTTCACATATCTCATGTCTCCGCAATATATATATCGCTGTGTCGTCTTAAAAACAGC 1347
Query 1372 AT-ACACAGACATGTAAAGATGTTTGTCTGCATCTCTCATCTCTTGTTTTCGAAAATGTA 1430
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1348 ATTACACAGACATGTAAAGATGTTTGTCTGCATCTCTCATCTCTTGTTTTCGAAA-TGTA 1406
Query 1431 ACTCTGGGATCTGATGATGCTTCTTTCTTCTTCCGTTACCTGAGAATCTTTTGGGTaaaa 1490
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1407 ACTCTGGGATCTGATGATGCTTCTTTCTTCTTCCTTTACCTGAGAATCTTTTGGGTAAAA 1466
Query 1491 aaaaaCCTCGTAGAGAGTTTTTATTTATCTCTTAAGA-GAAAAAGAGCTTAAAACGTAT- 1548
|||| |||||||||||||||||||||||||||||| | ||||| ||||||||||| |||
Sbjct 1467 AAAA-CCTCGTAGAGAGTTTTTATTTATCTCTTAAAAAGAAAA-GAGCTTAAAACATATC 1524
Query 1549 -----T-------T-ACTTCTTACAGTTACAAT----C----GTGT-T-ATTGGTT-C-A 1583
| | ||||| |||||||||||| | |||| | ||||||| | |
Sbjct 1525 ACACATCCAGAAGTTACTTCGTACAGTTACAATTTTACAATCGTGTGTTATTGGTTTCGA 1584
Query 1584 CGAAAGTCAAA-CATGATTTCTTTA-TTTATTTGGGGTCGGaaaaaaaaaT-GATTTTAT 1640
|||||||||| | |||||||||| ||| ||| | |||||| ||||||| ||||| ||
Sbjct 1585 AGAAAGTCAAAAC-TGATTTCTTTTCTTTTTTTTTG-TCGGAATAAAAAATTGATTT-AT 1641
Query 1641 GACAAAAAGAGTTTGAATCAAATTTTGATGTTCTTAGTTTTGTCCGAA 1688
||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1642 GACAAAAAGAGTTTGGATCAAATTT-GATGTTCTTAGTTTTGTCCGAA 1688
> AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting
domain 12 | chr4:6557237-6559487 FORWARD LENGTH=1454
Length=1454
Score = 553 bits (299), Expect = 2e-156
Identities = 573/702 (82%), Gaps = 32/702 (5%)
Strand=Plus/Plus
Query 643 GAAAACGGTGGTTTTCGTCGGAAGAAGAGC-TTTGG---TCAAGGGAAACGAAGGATGAA 698
||| ||||| | ||||||||||||||| | || || ||||||||||| || |||||
Sbjct 448 GAAGACGGTAGCTTTCGTCGGAAGAAG-TCGTTCGGACAACAAGGGAAACGGAGAATGAA 506
Query 699 TGCTCGAACAAGCATGGCTCAACGAGAAGATG-TTATCCGTAGAACCGTCTATGTCTCTG 757
| || | ||||| ||||||| || ||||| | | || | ||||| |||||||| ||||
Sbjct 507 TCCTAGGACAAGTTTGGCTCAGCGTGAAGA-GATCATAAGAAGAACTGTCTATGTGTCTG 565
Query 758 ATCTCGATCAACAGGTCACTGAAGAGCAGCTTGCTGGTTTGTTTGT-GAGCTGTGGACAG 816
|| | || |||||||||||||| ||||||||||||||||||||| | | ||| |||||||
Sbjct 566 ATATTGACCAACAGGTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCG-GCTTTGGACAG 624
Query 817 GTTGTTGACTGTCGCATATGTGGTGA-CCCAAACTCAGTGCTTCGGTTTGCATTCATTGA 875
|||||||||||||| ||||||||||| ||| |||||||| ||| ||||||| ||||| ||
Sbjct 625 GTTGTTGACTGTCGTATATGTGGTGATCCC-AACTCAGTACTTAGGTTTGCTTTCATCGA 683
Query 876 GTTCACTGATGAAGAGGGTGCAATGACTGCTCTGAATTTATCGGGGACTATG-TTGGGAT 934
|||||||||||||| |||||||| ||||||||||||||| || ||||| ||| || ||||
Sbjct 684 GTTCACTGATGAAGTGGGTGCAAGGACTGCTCTGAATTTGTCTGGGACGATGCTT-GGAT 742
Query 935 TTTATCCTGTGAAAGTTCTGCCATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTT 994
| ||||||||||| ||| |||| || || |||||||| |||||||||||||| || || |
Sbjct 743 TCTATCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGGTTAACCCAACCTTCT 802
Query 995 TGCCCAGGACTGAAGATGAGCGTGAGATGTGTGCGAGAACTATCTACTGTACTAACATTG 1054
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 803 TGCCAAGGACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGCACTAACATTG 862
Query 1055 ACAAGAAGGTGACTCAATCAGATGTGAAGA-TCTTCTTCGAATCCT-TCTGCGGAGAGGT 1112
|||||||| | |||||| | || | || | ||||||| || || | | || || |||||
Sbjct 863 ACAAGAAGCTCACTCAAACCGACATTAA-ACTCTTCTTTGAGTC-TGTGTGTGGCGAGGT 920
Query 1113 TTATCGCCTGAGGCTTCTTGGAGATTACCAACACTCGA-CTCGAATTG-CTTTTGTAGAG 1170
|| || |||||||| || || ||||| || || || | |||| || | ||| || |||
Sbjct 921 GTACCGTCTGAGGCTACTGGGCGATTATCATCA-TCCAACTCGCATCGGCTTC-GTGGAG 978
Query 1171 TTCGTAATGGCAGAAAGTGCAATAGCGGCTCTCAACTGCAGCGGAGTTGTTCTTGGTTCT 1230
|| || ||||| ||||| || |||||||||||||||||||| || || |||||||||||
Sbjct 979 TTTGTCATGGCTGAAAGCGCGATAGCGGCTCTCAACTGCAGTGGTGTCCTTCTTGGTTCT 1038
Query 1231 TTACCAATAAGGTCAGGTGAGTCCTTCAAAGACGCCTGTTCGT-CC-GAG--ATCACCGA 1286
||||| |||||| | ||||||| |||||||| || |||||| || | | ||| |||
Sbjct 1039 TTACCGATAAGG---G-TGAGTCCATCAAAGACACCGGTTCGTTCCCGTGCTATC-CCGC 1093
Query 1287 GGCATCCAATGCATTGATCTTAGCTTACAGGTTTTCACATAT 1328
| |||| |||||||| | | ||||| ||| ||||| | ||||
Sbjct 1094 GACATCAAATGCATTAACCGTAGCT-ACAAGTTTT-ATATAT 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83433305790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5