BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473468
Length=2685
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32850.1 | Symbols: UBP11 | ubiquitin-specific protease 11 |... 3794 0.0
> AT1G32850.1 | Symbols: UBP11 | ubiquitin-specific protease 11
| chr1:11902629-11906900 FORWARD LENGTH=2679
Length=2679
Score = 3794 bits (2054), Expect = 0.0
Identities = 2493/2700 (92%), Gaps = 49/2700 (2%)
Strand=Plus/Plus
Query 6 AATCCCTGATTCTGAATCCACCGGAGTTTGTGAAGTTCCT--TATTCTCCTGAGGAAGAG 63
|||| ||||||||||||||| ||||||||||||| |||| ||| ||||||||||||||
Sbjct 9 AATCACTGATTCTGAATCCATCGGAGTTTGTGAA--TCCTCCTATACTCCTGAGGAAGAG 66
Query 64 AGACGTATTGTGACGGAGCTTAATAGCGAAGCAGAGGCTGATTTGAAAGAGGGAAACTTG 123
||||||||||| || |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 67 AGACGTATTGTCACCGAGCTTAATAACGAAGCCGAGGCTGATTTGAAAGAGGGAAACTTG 126
Query 124 TATTTCGTTATCTCAAACAGGTGGTATACAAGGTGGCAGAGATTTGTTGGTCTACTAAC- 182
|||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 127 TATTTCGTTATCTCAAACAGGTGGTATACAAGATGGCAGAGGTTTGTTGGGCTACTAACA 186
Query 183 --AG-A------A---GAGA--CTTCAGAAGTTACCAGGCCTGGTCCAATTGATAATCAT 228
|| | | |||| |||||||||||||| | |||||||||||||||||||||
Sbjct 187 GAAGAATTTCGTAGTGGAGAGCCTTCAGAAGTTACCCGACCTGGTCCAATTGATAATCAT 246
Query 229 GATATAATTGATAGTGAAAGTGATGCTAGTGATCCGCAGCTTCGTATGATGCTGGAGGAA 288
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 247 GATATAATTGATAGTGAAAGTGATGCTAGTGATCCGCAACTTCGTATGATGCTGGAGGAA 306
Query 289 GGCGTCGACTATACTCTAGTTCCTCAACAAGTTTGGAGAAAACTCGTTGAATGGTATAAA 348
|| ||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||
Sbjct 307 GGTGTCGACTATACTCTAGTTCAACAAGAAGTTTGGAGAAAACTCGTTAAATGGTATAAA 366
Query 349 GGAGGTCCTCCATTACCAAGGAAGTTGATCTCTCAAGGATTTTACACTAAGAGCTTTAGT 408
|||||||||||| |||| || |||||||| |||||||| |||||||||||||||||||||
Sbjct 367 GGAGGTCCTCCAGTACCGAGAAAGTTGATATCTCAAGGGTTTTACACTAAGAGCTTTAGT 426
Query 409 GTGGAGGTTTACCCACTCTGTCTTAAGTTGACAGATAGTAGAGACGAAAGCACTACCATC 468
||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct 427 GTGGAGGTTTACCTACTGTGTCTTACCTTGACAGACAGTAGAGACGAAAGCACTACCATC 486
Query 469 ATAAGGTTGAGCAAACAGGCTTCTATAGGTCAACTTTATGAGATGGTTTGTGCTGGAAGA 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 487 ATAAGGTTGAGCAAACAGGCTTCTATAGGTCAACTTTATGAGATGGTTTGTGCTGGAAAA 546
Query 529 GGGGTAGCAAAAGAAAAGGCTCGCATCTGGGATTACTTTGAGAAGAAGAAAAGTGTACTC 588
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 547 GGGGTAGCAAAAGAAAAGGCTCGCATATGGGATTACTTTGAGAAAAAGAAAAGCGTACTC 606
Query 589 TTGGATCCTTCATCTGAAAAAAGCGTGGAGGAATCGGGCCTTCAACTGAACCAGGATATT 648
|||||||||||||||||| |||| ||||||||| ||||||||||| | ||||| ||||||
Sbjct 607 TTGGATCCTTCATCTGAACAAAGTGTGGAGGAAGCGGGCCTTCAATTCAACCAAGATATT 666
Query 649 CTTCTTGATGTTGATGGTTCTGCATCTTCTCAATATGACATGAGCTTGGCTGGAAATGAA 708
|||||||| |||||||| |||||||||||||||| || |||||||||||||| |||||||
Sbjct 667 CTTCTTGAGGTTGATGGATCTGCATCTTCTCAATTTGTCATGAGCTTGGCTGAAAATGAA 726
Query 709 TTAGCTCTGGTACCTCTAGACCCTACGAGCTCAGATGCTATGGATATTGTGCGTGGTGGG 768
|||||| ||||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 727 TTAGCTATGGTACCTCTAGAGCCTATGAGGTCAGATGCTATGGATATTGTGCGTGGTGGA 786
Query 769 GGGAACTTAGCTAATGGTCACTCCAACGGTTCCAAGTTTAGCCTCTTTGGGAGAAACGCT 828
|||| |||| ||||||||||||||||||||| ||||||||| |||||||||||||| ||
Sbjct 787 GGGACCTTATCTAATGGTCACTCCAACGGTTTTAAGTTTAGCTTCTTTGGGAGAAACACT 846
Query 829 TTCGAAGATGATATTTCTTCGAGTACTTTTGGGAAAGGAGAGAGGAGAGGTTTAGGAGGA 888
||| |||||||| ||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 847 TTCAAAGATGATGTTTCTTCAAGGACTTTTGGGAAAGGAGAGAAGAGAGGTTTAGGAGGA 906
Query 889 TTGCAGAATTTGGGAAATACATGCTTCATGAATAGTACTCTTCAGTGTTTGGCCCATACA 948
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 907 TTGCAAAATTTGGGAAATACATGCTTCATGAATAGTACTCTTCAGTGTTTGGCTCATACA 966
Query 949 CCCCCTATTGTTGAATATTTTCTGCAAGATTACAGATCCGACATAAATGCAGAGAATCCT 1008
||||||||||||||||||||||| ||||||||| | ||||||||||||||| ||||||||
Sbjct 967 CCCCCTATTGTTGAATATTTTCTACAAGATTACCGCTCCGACATAAATGCAAAGAATCCT 1026
Query 1009 TTGGGAATGCGTGGTGAGCTTGCAATTGCATTTGGTGAGCTGTTGAGGAAATTGTGGTCA 1068
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1027 TTGGGAATGCGTGGTGAGCTTGCAATTGCATTTGGTGAACTTTTGAGGAAATTGTGGTCA 1086
Query 1069 TCTGGACAGAATACAGTTGCTCCGCGTGCTTTTAAGACAAAATTGGCTCGATTTGCTCCA 1128
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1087 TCTGGACAAAATACAGTTGCGCCGCGCGCTTTTAAGACAAAATTGGCTCGATTTGCTCCA 1146
Query 1129 CAATTTAGTGGTTATAATCAGCATGATTCTCAAGAAATGCTTGCTTTCTTATTGGATGGG 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 CAATTTAGTGGTTATAATCAGCATGATTCTCAAGAAATGCTTGCTTTCTTATTGGATGGG 1206
Query 1189 CTACATGAAGACTTGAACAAGGTAAAACGAAAACCTTATATTGAAGCTAAAGATTCAGAT 1248
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 CTTCATGAAGACTTGAACAAGGTAAAACGAAAACCTTATATTGAAGCTAAAGATTCAGAT 1266
Query 1249 GGTCGTCCAGATGATGAAGTAGCTGAAGAAAAATGGAAATACCACAAGGCCCGAAATGAC 1308
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1267 GGTCGTCCAGATGATGAAGTAGCCGAAGAAAAGTGGAAATACCATAAGGCCCGAAATGAC 1326
Query 1309 TCAGTGATAGTTGACGTCTGCCAAGGACAATACAAGTCAACACTGGTCTGCCCAGATTGT 1368
|| |||||||||||||||| |||||||||||||||||||||| |||| || |||||||||
Sbjct 1327 TCTGTGATAGTTGACGTCTTCCAAGGACAATACAAGTCAACATTGGTGTGTCCAGATTGT 1386
Query 1369 GGAAAAATCTCAATCACCTTTGATCCCTTCATGTACTTATCTTTGCCGTTGCCATCGAGT 1428
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1387 GGAAAAATCTCAATCACATTTGACCCCTTCATGTACTTATCTTTGCCGTTGCCATCAAGT 1446
Query 1429 CGCACTCGATCAATGACTGTTACAGTGTTTTATGGCGATGGAAGCCATCTTCCGATGCCA 1488
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1447 CGCACTCGATCAATGACTGTTACAGTGTTTTATGGCGATGGAAGTCACCTTCCGATGCCA 1506
Query 1489 TACACTGTAACAGTTCCTAAAGATGGTTCTTGTAGAGACCTCAGTAATGCATTAGGCACT 1548
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1507 TACACTGTAACAGTTCCTAAAGACGGTTCTTGTAGAGATCTCAGTAATGCATTAGGCACT 1566
Query 1549 GCTTGCTGCTTAAACAATGACGAAAGCCTTTTACTCGCAGAGGTATATGACCACAAGGTC 1608
||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1567 GCTTGCTGCTTGGACAATGACGAAAGCCTTTTACTTGCAGAGGTGTATGACCACAAGGTC 1626
Query 1609 TTTAAATATTTTGAGAATCCCCTGGAGTTGTTGAATGCGATAAAAGACAATGAACGTATT 1668
||||| |||| ||| ||||||| ||||||| |||||| ||||||||||||||||| ||||
Sbjct 1627 TTTAAGTATTATGAAAATCCCCGGGAGTTGCTGAATGGGATAAAAGACAATGAACATATT 1686
Query 1669 GTGGCATATCGGTTCAACCAGATGCACAAAGGTTTAGGAAAAGTCAAACTTGAAATTCTT 1728
||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct 1687 GTGGCATATCGGTTCAAGCAGATGCACAAAGGACCAGGAAAAGTCAAACTAGAAATTCTT 1746
Query 1729 CATGGGGAGCAGGAAAAGTCTGATAGTGGCAGAGGCCCAAAGCT-TTTTGGAACTCCCCT 1787
||||||||||||||||||||| | ||| ||| ||||||||| | |||||||||||||||
Sbjct 1747 CATGGGGAGCAGGAAAAGTCT-A--GTGACAGGGGCCCAAAG-TGTTTTGGAACTCCCCT 1802
Query 1788 TGTCACTTATATCAACAAAGAACCACTTAGTGGATCTGACATTGCTGCAAGCATCT-TCG 1846
||||||||||||||||||||||||||||||||| | ||||||||| | ||||||| | |
Sbjct 1803 AGTCACTTATATCAACAAAGAACCACTTAGTGGAACAGACATTGCTACTAGCATCTCT-G 1861
Query 1847 GATTGCTGTCACCTCTACGCCGAGTTCATATGTCATCCATAGTTCATAGTGAAAACGAGA 1906
||||| |||||||||||||||| ||||||||||||| ||||| |||||| ||||||||
Sbjct 1862 GATTGTTGTCACCTCTACGCCGGGTTCATATGTCATGTGTAGTTAATAGTGGAAACGAGA 1921
Query 1907 ATAGCCACGTTCCAGATGTTGCAGATGAATCATCCAGAAGTGCATCATCTAGAGACACTG 1966
|| ||||||||||||||| | || ||||||||||| || |||||||||||| |
Sbjct 1922 ATGGCCACGTTCCAGATG----A-AT----CATCCAGAAGTATATTATCTAGAGACACGG 1972
Query 1967 AAACAGAAGATAATGCAGTTGATGATAGAGAATTATCTTTCAGCCTCTTGCCAGATTACC 2026
||||||| ||||||| | | | || || | ||||| || |||||||| | |||||||
Sbjct 1973 AAACAGAGGATAATG-A-T--A-GA--GA-A-TTATCCTTGAGCCTCTTACGAGATTACT 2023
Query 2027 ATTCTTTCAGTCTCCAGCCACTTGAGTCCGATTCTGTTGTGAATCCTGGTAGTGTTACAA 2086
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2024 ATTCTTTCAATCTCCAGCCACTTGAGTCCGATTCCGTTGTGAATCCTGGTAGTGTTACAA 2083
Query 2087 AGGTTCTAGTCAAGTGGAATGAGAAAGAGCATGAGAAATATGACTCCAGCTACTTGAATG 2146
||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2084 AGGTTTTAGTCAAGTGGAACGAGAAAGAGCATGAGAAATATGACTCAAGCTACTTGAATG 2143
Query 2147 ATCTACCTGAGGTTCATAAATCAAGTTTCTTGGCAAAGAAGATAAGGCAAGAGGAAATAT 2206
|||||||| ||||||||||| || | ||||||||||||||| || |||||||| |||||
Sbjct 2144 ATCTACCTAAGGTTCATAAA--AA-TGTCTTGGCAAAGAAGACAATGCAAGAGGGAATAT 2200
Query 2207 CTTTGTTTTCATGCTTGGAAGCTTTTCTAGCGGAAGAGCCTTTAGGACCCGATGATATGT 2266
|||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||| ||||
Sbjct 2201 CTTTGTTTTCATGCTTGGAAGCCTTTCTAGCAGAAGAGCCTCTAGGACCAGATGACATGT 2260
Query 2267 GGTATTGTCCTGGTTGCAAAGAACATAGACAAGCGAACAAGAAGCTAGACTTGTGGAAGT 2326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2261 GGTATTGTCCTGGTTGCAAAGAACATAGACAAGCGAACAAGAAGCTAGACTTGTGGAAGT 2320
Query 2327 TGCCAGATATTCTTGTGTTCCACCTGAAACGGTTCACGTATAGCAGATATTTCAAGAATA 2386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2321 TGCCAGATATTCTTGTGTTCCACCTGAAACGGTTCACGTATAGCAGATATTTCAAGAATA 2380
Query 2387 AGATTGATACATTAGTGAATTTCCCGATTCATGGTCTAGAT-TTAAGCAAGTATGTAACG 2445
|||||||||| |||||||| |||| ||||| | ||||||| ||| ||||||| |||| |
Sbjct 2381 AGATTGATACGTTAGTGAACTTCCATATTCACGATCTAGATCTTA-GCAAGTACGTAAAG 2439
Query 2446 AACAAAGACGGTCAGTCATATCTTTACGAGCTGTATGCCATTAGCAATCATTATGGTGGC 2505
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2440 AACGAAGACGGTCAGTCATATCTTTACGAGCTGTATGCGATTAGCAATCATTATGGTGGC 2499
Query 2506 CTGGGAGGTGGTCACTACACTGCTTACGCTAAGTTGATGGATGAGAACAAATGGTATGAT 2565
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 2500 CTTGGAGGTGGTCACTACACTGCTTACGCTAAGTTGATGGATGAGACCAAATGGTATAAT 2559
Query 2566 TTTGATGACAGCCGTGTTTCAGCTGTAAATGAATACGAGATCAAGACTCCGGCTGCTTAC 2625
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 2560 TTTGATGACAGCCGTGTTTCAGCTGTAAATGAATCCGAGATCAAGACTTCGGCTGCTTAC 2619
Query 2626 GTTTTGTTCTATCAAAGAGTGAAAAGTGAATCAGAGACATCGGATATGAAAATGGATTAG 2685
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2620 GTTTTGTTCTATCAAAGAGTGAAAAGTGATTCAGAGACATCGGATATGAAAATGGATTAG 2679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133343734494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5