BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473471
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32870.1 | Symbols: ANAC13, ANAC013, NAC13 | NAC domain prot... 2111 0.0
> AT1G32870.1 | Symbols: ANAC13, ANAC013, NAC13 | NAC domain protein
13 | chr1:11911679-11913947 FORWARD LENGTH=1908
Length=1908
Score = 2111 bits (1143), Expect = 0.0
Identities = 1478/1637 (90%), Gaps = 33/1637 (2%)
Strand=Plus/Plus
Query 32 AAAAGTGATGGACTTGACGGTTGAGAACGGAGGTTTAGCACCAGGTTTTAGGTTTCATCC 91
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 AAAAGTGATGGACTTGTCGGTTGAGAACGGAGGTTTAGCTCCAGGTTTTAGGTTTCATCC 119
Query 92 GACGGACGAAGAACTTGTGGTCTATTACCTCAAGAGAAAGATTCGTCGGAAAAAACTCAG 151
|||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||
Sbjct 120 GACGGACGAAGAACTTGTCGTCTATTATCTCAAAAGAAAGATCCGTCGGAAAAAACTCAG 179
Query 152 AGTCGATGCTATCGGCGAGACTGATGTCTACAAGTTTGATCCTGAGGAATTGCCTGAGAA 211
|||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 180 AGTCGAAGCAATCGGCGAGACTGATGTCTATAAGTTTGATCCTGAGGAATTACCTGAGAA 239
Query 212 AGCGTTATATAAGACTAGGGATCGTCAGTGGTTCTTTTTCAGCTTGAGGGATAGGAAACA 271
|||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 240 AGCGTTGTATAAGACTAGAGATCGTCAATGGTTCTTTTTCAGCTTAAGGGATAGGAAACA 299
Query 272 TGGAAGTAGGTCAAGTAGAGCTACTGACCGTGGCTATTGGAAAGCAACAGGGAAAGATAG 331
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 300 TGGAAGTAGGTCAAGTAGAGCTACTGAACGTGGCTATTGGAAAGCAACAGGGAAGGATAG 359
Query 332 AGTCATTAAGTGTGATTCTCGCA-ACGTTGGTGAGAAGAAGACGCTTGTTTTCCATAGAG 390
||||||| | |||||||| | | |||||| ||||||||||| ||||||||||||||||
Sbjct 360 AGTCATTCATTGTGATTCGAG-ACCCGTTGGAGAGAAGAAGACTCTTGTTTTCCATAGAG 418
Query 391 GCAGGGCACCTAATGGTGAACGGACTAATTGGGTGATGCATGAGTATACATTGCATGAAG 450
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 419 GCAGGGCACCTAATGGCGAACGGACTAATTGGGTGATGCATGAGTATACATTGCACAAAG 478
Query 451 AGGAGCTTAAGAGGTGTGGTGGTGGTGATGTTAAGGATGCTTTTGTTCTTTACAAGATTT 510
||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 479 AGGAGCTCAAGAGGTGTGGTGGTGAAGATGTTAAGGATGCTTATGTTCTTTACAAGATTT 538
Query 511 ATAAGAAAAGTGGGTCTGGTCCTAAGAATGGTGAGCAATATGGAGCTCCTTTTATTGAAG 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATAAGAAAAGTGGGTCTGGTCCTAAGAATGGTGAGCAATATGGAGCTCCTTTTATTGAAG 598
Query 571 AAGAATGGGCTGAAGATGATGATGATGTCGATGAGCCTGCTGCTGTACTCGATGTTCCGG 630
|||||||||||| | | |||||||| | ||||| || | || | | || | || |
Sbjct 599 AAGAATGGGCTG-A-A-GATGATGA--T-GATGA---TG-T--TG-A-T-GA-G--CCTG 640
Query 631 CTAATCAGCTCGTTGTTTCAGCTGGTGTCGATAATAATTTATGGGGGAAAGGGCTTAACC 690
||||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||||||
Sbjct 641 CTAATCAGCTCGTTGTTTCGGCTAGTGTTGATAATAGTTTATGGGGGAAAGGGCTTAACC 700
Query 691 AATCTGAATTGGATGATAATGATATCGAAGAGCTGATGAGACAGGTTAGAGATCAGCCTG 750
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct 701 AATCTGAATTGGATGATAATGATATTGAAGAGCTGATGAGTCAGGTTAGAGATCAGTCTG 760
Query 751 GTCGAACAGTGCAGCAGAATGGGGTGTCTGGACTGAACTCTCATGTCGAAACATATAATG 810
||| |||| ||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 761 GTCCAACATTGCAGCAGAATGGGGTGTCTGGACTGAACTCTCATGTAGACACGTATAAT- 819
Query 811 C-GGTCAATCTGGAGGACGATATGTATTTGGAAATCGATGATCTTTTGCTCCCTGAACCT 869
| || || |||||||| |||||||||||||||||| |||||||| || |||||||||
Sbjct 820 CTGGAGAACCTGGAGGAAGATATGTATTTGGAAATCAATGATCTTATGGAACCTGAACCT 879
Query 870 GAACCAGCTTCTGTGGAAGTCATGGAGAAGAACTGGAACCAGGATGGTTCTGGTGTCCTG 929
|||||| |||||||||||||||||||||| ||||||||| |||||||||||||| |||||
Sbjct 880 GAACCAACTTCTGTGGAAGTCATGGAGAATAACTGGAACGAGGATGGTTCTGGTCTCCTG 939
Query 930 AATGATAATGATTTCGTTGATACTGATTCATATTTCCTTGATTTGGGAGCGACAAATCCT 989
|||||| |||||||||||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct 940 AATGATGATGATTTCGTTGGTGCTGATTCATATTTCCTTGATTTGGGAGTGACAAATCCT 999
Query 990 CAGTCAGATCCTGTCACTGTTGGTTTGAAAAATGGGTTCGCACAAAGTCTTCAGGTGAAC 1049
|||| |||| ||| | || || ||||||||||||||| ||||||||||||||||||||
Sbjct 1000 CAGTTAGATTTTGTTAGTGGTGATTTGAAAAATGGGTTTGCACAAAGTCTTCAGGTGAAT 1059
Query 1050 ACTTCTTTGGTGATC-GACCAGGCCAATAATAACCTGTTCCAGCAGCACA-CAGGGAAGA 1107
|||||||| ||| | |||||||||||||||||| |||||||||||| | |||||||||
Sbjct 1060 ACTTCTTTAATGA-CTTACCAGGCCAATAATAACCAGTTCCAGCAGCA-ATCAGGGAAGA 1117
Query 1108 ACCAAGCTAGCAACTGGCCACTTCGTAACAGCTATACCAGACAGATAAACAATGGATCAT 1167
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1118 ACCAAGCTAGTAACTGGCCACTCCGTAACAGCTATACCAGACAGATAAACAATGGATCAT 1177
Query 1168 CTTGGATGCAGGAGATAAATAATGACGGACTAAACGCTACCCCATTTGGTGAAGCGCCTG 1227
| ||| |||||||| |||| ||||||||||| | || ||||| |||||||| |||||||
Sbjct 1178 CGTGGGTGCAGGAGCTAAACAATGACGGACTTACCGTTACCCGGTTTGGTGAGGCGCCTG 1237
Query 1228 GTACAGGTGATGCATCTGAATTCATAAACCCTCTTACTTCTGGTGTAAGTATAACTAAGG 1287
||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| |
Sbjct 1238 GTACAGGTGATTCATCTGAATTCCTAAACCCTGTTCCTTCTGGTATAAGTACAACTAATG 1297
Query 1288 AAGATGACGCGTCAAAAGACGAGTCTAGTAAGTTTGCTTCTAGTGTATGGACTTTCCTGG 1347
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 AAGATGACCCGTCAAAAGACGAGTCTAGTAAGTTTGCTTCTAGTGTATGGACTTTCCTGG 1357
Query 1348 AATCCATTCCTGCAAATCCAGCATATGCTTCAGAGAATCCATTTGTTAAGCTGAACCTTG 1407
|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1358 AATCCATTCCTGCAAAGCCAGCATATGCATCAGAGAATCCATTTGTGAAGCTGAACCTTG 1417
Query 1408 TCAGAATGTCAAGCAATGGTGGTCGTTTCAGGTTTGCTTCTAAGAGCACAGGTAACAATG 1467
| |||||||||| || ||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct 1418 TTAGAATGTCAACCAGTGGTGGTCGTTTCAGGTTTACTTCTAAAAGCACAGGTAATAATG 1477
Query 1468 TT-TCTGTCACAGCTAACGATTCAGCGGCAAAGAGGAAGAAGTATGGAGGAAACAACGAC 1526
|| | ||| | | || || ||||| | |||||||| |||| |||||||||||||||
Sbjct 1478 TTGT-TGTTATGGATAGTGACTCAGCAGTGAAGAGGAACAAGTCTGGAGGAAACAACGAT 1536
Query 1527 AAGAAGAAGAACAA---CAAAGGTTTCTTCTGCTTATCGATCATTGGGGCGCTATGTGCT 1583
||||||||||| || |||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1537 AAGAAGAAGAAGAAGAACAAAGGTTTCTTTTGCTTATCGATCATTGGGGCTTTATGTGCT 1596
Query 1584 TTATTTTGGGTGATCATAGGAACAATGGG-GGTTTCAGGGAGGTCTCTATTGTGGTGAGA 1642
|| |||||||||||||||||||||||||| |||| |||||||| || | || ||||||||
Sbjct 1597 TTGTTTTGGGTGATCATAGGAACAATGGGAGGTT-CAGGGAGGCCTTTGTTATGGTGAGA 1655
Query 1643 ACCCAAAAGTCCAAGAG 1659
||| |||| ||||||||
Sbjct 1656 ACCGAAAAATCCAAGAG 1672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81977489985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5