BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473473
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32910.1 | Symbols: | HXXXD-type acyl-transferase family pr... 900 0.0
AT5G16410.1 | Symbols: | HXXXD-type acyl-transferase family pr... 368 7e-101
> AT1G32910.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr1:11925426-11926908 FORWARD LENGTH=1395
Length=1395
Score = 900 bits (487), Expect = 0.0
Identities = 585/633 (92%), Gaps = 4/633 (1%)
Strand=Plus/Plus
Query 131 TGGCTGAAACCCTAAAAGCTTCCTTGGCTGAGGCTCTCGTCTCCTACTACGCCTTTGCTG 190
||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |
Sbjct 182 TGGCTGAAACCCTAAAAGCGTCTTTGGCTGAGGCTCTCGTCTCCTACTATGCCTTTGCCG 241
Query 191 GCGAACTCGTGAAAAACTCCGCCGGAGAACCAGAGATTCTCTGCAATAACCGTGGCGTGG 250
| |||||||||||||||||| | |||||||| |||||||||||||| ||||| ||||| |
Sbjct 242 GTGAACTCGTGAAAAACTCCTCTGGAGAACCCGAGATTCTCTGCAACAACCGCGGCGTAG 301
Query 251 ACTTCCTTGAGGCGCTTGCTGATGTGGAGCTCCGAGAGCTTAACTTGCATGATCCTGATG 310
|||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 302 ACTTCCTTGAGGCGGTTGCTGACGTGGAGCTCCGGGAGCTTAACTTGCATGATCCTGATG 361
Query 311 AAAGTATCGCCAAGCTTGTTCCGAAGAAGAAGCATGGAGTCCTAGCTATTCAGGTCACTC 370
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 362 AAAGTATCGCCAAGCTTGTTCCGAAGAAGAAGCATGGAGTTATAGCTATTCAGGTAACTC 421
Query 371 AACTTAAATGTGGGAGCATAGTGGTTGGATGCACATTTGATCAT-GAGATAGCAGATGCT 429
||||||||||||||||||||||||| |||||||||||||||||| || || |||||||||
Sbjct 422 AACTTAAATGTGGGAGCATAGTGGTAGGATGCACATTTGATCATCGA-ATTGCAGATGCT 480
Query 430 TTCTCCATGAACATGTTCCTCGTTTCTTGGGCTGAGATCTCTCGATCCGATGTACCAATC 489
|||||||||||||||||||| ||||||||||||||||||||| ||| | ||| |||||||
Sbjct 481 TTCTCCATGAACATGTTCCTTGTTTCTTGGGCTGAGATCTCTAGATTCAATGCACCAATC 540
Query 490 TCTTATGTCCCATCGTTCTGGAGATCAATGCTGAACCCGCGACGACCTTTGATTATCGAC 549
|||| ||||||||||||| ||||||| || || |||||||||||||| |||||||||||
Sbjct 541 TCTTCTGTCCCATCGTTCCGGAGATCTATACTAAACCCGCGACGACCACTGATTATCGAC 600
Query 550 TCATCTATAGACAAGATGTATATGCCTGTCACGTCTTTGCCCCTTCCACAAGAAACAACC 609
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCATCTATAGACAAGATGTATATGCCTGTCACGTCTTTGCCCCTTCCACAAGAAACAACA 660
Query 610 AATGACCCAGATAATATTCTCACAAGCCGTATCTACTACATCAAAGGAAATGCGTTGGAA 669
||||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||||
Sbjct 661 AATGACCTAGATAATATCCTCACAAGCCGTATCTATTACATCAAAGAAAATGCGTTGGAA 720
Query 670 GATCTCCAA-CGTCTTGCAAGCAGCAGCTCCTCCAAGAATGGTTATAGTCAGAGGACAAA 728
||||||||| | ||| |||||| | |||||| |||||| ||||||| |||||||||| ||
Sbjct 721 GATCTCCAAAC-TCTAGCAAGCGGTAGCTCCCCCAAGACTGGTTATGGTCAGAGGACGAA 779
Query 729 ACTCGAGTCGTTCAGCGCGTTTCTATGGAAACT 761
||| |||||||||||||||||||||||||||||
Sbjct 780 ACTAGAGTCGTTCAGCGCGTTTCTATGGAAACT 812
Score = 750 bits (406), Expect = 0.0
Identities = 495/538 (92%), Gaps = 6/538 (1%)
Strand=Plus/Plus
Query 762 GAAATCGAAAATGGGTATCGTCGTTGATGGAAGGAGAAGACTTATGGAGAAAGAAAACAG 821
||| |||||||||||||| || || || ||||||||||||||||||||||||||| |||
Sbjct 852 GAACTCGAAAATGGGTATTGTTGTCGACGGAAGGAGAAGACTTATGGAGAAAGAAGACAA 911
Query 822 CACTTACTTTGGAAACGTTCTTTCCATCCCATTTGGTGGGCACAGTATCAATGACTTGAT 881
||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 912 CACTTACTTTGGAAACGTTCTTTCCATCCCATTTGGTGGACAGAGTATCGATGACTTGAT 971
Query 882 TGACAAGCCATTGTCTTGGGTGAGCAACGAAGTTCACAAATTCTTGGAAGAAGCAGTGAC 941
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 972 TGACAAGCCATTGTCTTGGGTGACCAACGAAGTTCACAGATTCTTGGAAGAAGCAGTGAC 1031
Query 942 AAAAGATCATTTCTTAAACTTGATCGATTGGGTTGAGATTCACCGCCCGATACCGGCATT 1001
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1032 CAAAGAACATTTCTTAAACTTGATTGATTGGGTTGAGATTCACCGCCCGATACCGGCAGT 1091
Query 1002 GTCGAGGATCTATAGTACCGGAGCCAACTATGGACCCGCTTTTGTGGTTTCCTCC----G 1057
|||||||||||||||||| ||| || || ||||||| ||||||||||| |||||| |
Sbjct 1092 GTCGAGGATCTATAGTACGGGAACCGACGATGGACCAGCTTTTGTGGTCTCCTCCGGGAG 1151
Query 1058 G-G-TTTCCGGTGACCAAGGTGGATTTCGGTTGGGGCTTACCGGTTATTGGGTCCTACCA 1115
| | |||||||||| |||||| |||||||||||||||||||||||| ||||||| |||||
Sbjct 1152 GAGTTTTCCGGTGAACAAGGTTGATTTCGGTTGGGGCTTACCGGTTTTTGGGTCATACCA 1211
Query 1116 TTTCCCATGGGAAGGCAGCGCCGGATATGTGATGCCAATGCCGAGTCCCGTGGACGACGG 1175
|||||||||||| || ||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 1212 TTTCCCATGGGAGGGAAGCTCCGGATATGTGATGCCGATGCCGAGTCCGGTGGACGACGG 1271
Query 1176 GGACGGAGATTGGGTGGTTTACTTGCATCTTACGAAAGGACAGTTAAAGTTCATTGAAGA 1235
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1272 GAACGGAGATTGGGTGGTTTACTTGCATCTTACGAAAGGACAGTTAAAGTTCATTGAGGA 1331
Query 1236 GGAGGTTTCCCATGTGCTTAAACCCATAGACAATGACTATCTCAAGATTAACGCCATC 1293
||||| |||||||||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 1332 GGAGGCTTCCCATGTGCTTAAACCCATAGACAATTATTATCTCAAGATTAACACCATC 1389
Score = 128 bits (69), Expect = 1e-28
Identities = 119/141 (84%), Gaps = 11/141 (8%)
Strand=Plus/Plus
Query 1 ATGGGAGATGCGGCGGAGCAAGCACGTAGTTTCCACGTGACCACCACAAGGGAGCAGGTT 60
|||| |||||| |||||||||| |||| |||||||||||| ||||| |||| ||||| |
Sbjct 1 ATGGAAGATGCAGCGGAGCAAGAACGTGGTTTCCACGTGATCACCATAAGGAAGCAGATA 60
Query 61 GTCACGGCTG-----------CAAGACCATTGGCTTCCTCTTTCAAACCTCGATCTCCTC 109
|||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GTCACGGCTGCTCTTCCCCTCCAAGACCATTGGCTTCCTCTTTCAAACCTCGACCTCCTC 120
Query 110 CTCCCTCCTGTCCACATCAGC 130
|||||||||||||| ||||||
Sbjct 121 CTCCCTCCTGTCCAAATCAGC 141
> AT5G16410.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:5365669-5367385 REVERSE LENGTH=1461
Length=1461
Score = 368 bits (199), Expect = 7e-101
Identities = 430/538 (80%), Gaps = 29/538 (5%)
Strand=Plus/Plus
Query 766 TCGAAAATGGGTATCGTCGTTGATGGAAGG-AGAAGACTTATGGAGAAAGAAAACAGCAC 824
|||||| | || ||||| |||||||||||| |||| |||||||||| |||| ||| |||
Sbjct 915 TCGAAACTTGGCATCGTTGTTGATGGAAGGAAGAA-ACTTATGGAGCAAGAGAACTGCAA 973
Query 825 TTACTTTGGAAACGTTCTTTCCA-TCCCATTTGGTGGGCACAGTATCAATGACTTGATTG 883
||||||||| ||||| || | || | |||||||| | || || ||| ||||||||||
Sbjct 974 TTACTTTGGGAACGTCCTCT-CAGTTCCATTTGGAGAGCGGAGAATCGATGACTTGATCC 1032
Query 884 ACAAGCCATTGTCTTGGGTGAGCA-ACGAAGTTCACAAATT-CTTGGA-AGAAGCAGTGA 940
||||||||||||||||||||| || |||| |||||||| || | |||| || | || |||
Sbjct 1033 ACAAGCCATTGTCTTGGGTGA-CAGACGAGGTTCACAAGTTAC-TGGAGAGTA-CAATGA 1089
Query 941 CAAAAGATCATTTCTTAAACTTGATCGATTGGGTTGAGATTCA-CCGCCCGATACC-GGC 998
| ||||| |||||||| |||||||||||||||||||||| | | ||| |||||||| |
Sbjct 1090 CCAAAGACCATTTCTTGAACTTGATCGATTGGGTTGAGACT-AGCCGTCCGATACCAGTT 1148
Query 999 ATTGTCGAGGATCTATAGTACCGGAGCCAACTATGGACCCGCTTTTGTGGTTTCCTC-CG 1057
| | || |||||||| ||||| ||| ||||| ||||||||||||| || ||||| || |
Sbjct 1149 A-TATCAAGGATCTACAGTACAGGATCCAACGATGGACCCGCTTTCGTTGTTTCGTCTGG 1207
Query 1058 ---G-G-TTTCCGGTGACCAAGG-TGGATTTCGGTTGGGGCTTACCGGTTATTGGGTCCT 1111
| | ||||| ||| || || | |||||||| ||||||| || ||| |||| || |
Sbjct 1208 AAAGAGTTTTCCAGTGGCC-CGGATTGATTTCGGGTGGGGCTCGCCTGTTTTTGGATCGT 1266
Query 1112 ACCATTTCCCA--TGGGAAGGCAGCGCCGGATATGTGATGCCAATGCCGAGTCCCGTGGA 1169
||||| ||||| ||| | |||| || || || || ||| ||||||||||||| |||||
Sbjct 1267 ACCATCTCCCACCCGGG-A-GCAGAGCTGGTTACGTAATGACAATGCCGAGTCCGGTGGA 1324
Query 1170 CGACGG-GG--ACGGAGATTGGGTGGTTTACTTGCATCTTACGAAAGGACAGTTAAAGTT 1226
|||| || |||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 1325 AAACGGTGGCTCCGGAGATTGGACGGTTTACTTGCATCTTACGAAAGGACAGTTGAGGTT 1384
Query 1227 CATTGAAGAGGAGGTTTCCCATGTGCTTAAACCCATAGACAATGACTATCTCAAGATT 1284
|||||| | |||| ||| |||||| |||| || | ||||| |||||||||||||||
Sbjct 1385 TATTGAACAAGAGGCTTCTCATGTGTTTAATCCTGTTGACAACGACTATCTCAAGATT 1442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63905293785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5