BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473474

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G32928.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   569    6e-162


> AT1G32928.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G32920.1); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr1:11931203-11931801 FORWARD LENGTH=599
Length=599

 Score =  569 bits (308),  Expect = 6e-162
 Identities = 434/489 (89%), Gaps = 32/489 (7%)
 Strand=Plus/Plus

Query  12   ATAATGAATTCGATGTTTAGTGCCTTTGACGCCATGTGTGCAGAGATTATGGGTAAGAAA  71
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  127  ATAATGAATTCGATGTTTAGTGCCTTCGACGCCATGTGTGCAGAGATTATGGGAAAGAAA  186

Query  72   GTCACCGCTGCTTCTTATGTCTACCGCTCTGAACGCAATTCTG------CTTCTTCTTCC  125
            |||||||||||||||||||||||||||||||||||||||||||      |||||||||||
Sbjct  187  GTCACCGCTGCTTCTTATGTCTACCGCTCTGAACGCAATTCTGCTTCTTCTTCTTCTTCC  246

Query  126  GGCGGCGGTCAAAACGCGTCTTTGTCGCTCAAGAAAGATGAACAAGCTTCCAAGAACATG  185
            | |||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct  247  GTCGGCGGTCAAAACGCGTCTTTGTCTCTCAAGAAAGATGAAAAAGCTTCAAAGAACATG  306

Query  186  GATTTACCGACCAAGACACCGAGGTTTGCTCTTGAGCTTGATGGACTTAATTGCTTCGAG  245
            |||||||| || |||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct  307  GATTTACCAACGAAGACACCGAGGTTTGCTCTTGAGCTCGATGGTCTTCATTGCTTCGAG  366

Query  246  ACTATAGTTCGTTCTTGATCAATATCAAGATTACGAAtttttgctgagttttttctt-tt  304
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct  367  ACTATAGTTCGTTCTTGATCAATATCAAGATTACCAATTTTTGCTGAGTTTTTTTTTCTT  426

Query  305  gtt-tt-ttCTTGTTCTG-----ATTCCTTTTATGTAAATACAATTTTGGAAAATTCAAT  357
             || || || ||||||||     ||||||||||||||||||||||||||||| ||| |||
Sbjct  427  TTTCTTGTT-TTGTTCTGTTTCGATTCCTTTTATGTAAATACAATTTTGGAAGATTTAAT  485

Query  358  TTTCTTGATTACAATCATCATCATTATGTGATTGTTTAATTTCGAATTACTCGTGTTCTG  417
            || |||||||| |||||||||| |||||||||| |  | || | | |  |  || |||||
Sbjct  486  TT-CTTGATTAGAATCATCATCCTTATGTGATT-TG-A-TT-C-A-T--C--GT-TTCTG  533

Query  418  CTTTA-TAAATTCATGAATTTGTATATATAATATAAAGAAAAAGAAAAGAATTTTTGTTT  476
            ||||| ||| |||||||||||||| ||||| | |||||||||| | |||| |||||||||
Sbjct  534  CTTTACTAA-TTCATGAATTTGTACATATA-T-TAAAGAAAAA-AGAAGACTTTTTGTTT  589

Query  477  CTGTTGTTC  485
            ||||| |||
Sbjct  590  CTGTTCTTC  598



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23107707620


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5