BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473475
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32930.1 | Symbols: | Galactosyltransferase family protein ... 2108 0.0
> AT1G32930.1 | Symbols: | Galactosyltransferase family protein
| chr1:11931842-11934759 REVERSE LENGTH=1698
Length=1698
Score = 2108 bits (1141), Expect = 0.0
Identities = 1332/1420 (94%), Gaps = 30/1420 (2%)
Strand=Plus/Plus
Query 139 GACGATGATGTCGTTTTGATGAGTTCACCTGTTGTTTTCGCTAAGACAACCTTAAAAATA 198
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 239 GACGATGATGTCGTTTTGATGAGTTCAGCTGTTGTTTTCGCTAAGACAACCTTAAAAATA 298
Query 199 AAGAAACTAGCTTT-C-C-TCT-TC--------------TCTC----A-A--T-AAGAAA 232
|||||||||||||| | | ||| || | || | | | ||||||
Sbjct 299 AAGAAACTAGCTTTCCTCTTCTCTCATTAAAGAGTTTTTTTTCGAAAAGAGTTAAAGAAA 358
Query 233 AAATGGGAATGGGAAGGTATCAGAAATCTGCAACTTCTGGTGTTTCAGCGAGATGGGTTT 292
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 359 AAATGGGAATGGGAAGGTATCAGAAATCTGCAACTTCTGGTGTTTCAGCTAGATGGGTTT 418
Query 293 TTGTTCTCTGTATTTCTAGCTTCCTTCTTGGTGTTCTTGTTGTTAACAGGCTTTTGGCAA 352
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 419 TTGTTCTCTGTATTTCTAGCTTCCTTCTTGGTGTTCTTGTCGTTAACAGGCTTTTGGCAA 478
Query 353 GTTTTGAAACCGTAGATGGCATTGAGAAAGGTTCATCTGAGCCGAATGATCAAGCTAGGT 412
||||||||||||||||||||||||||| || |||| |||||| ||||||||| |||| |
Sbjct 479 GTTTTGAAACCGTAGATGGCATTGAGAGAGCTTCACCTGAGCAAAATGATCAATCTAGAT 538
Query 413 CACTTCATCCTCTTATTGATTGTGAGAGTAAGGAAGGAGACATTCTATCTCGAGTTTCGC 472
||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 CACTTAATCCTCTTGTTGATTGTGAGAGCAAGGAAGGAGACATTCTATCTCGAGTTTCGC 598
Query 473 ATACTCATGATGTTATCAAGACATTGGACAAGACAATTTCTTCTCTTGAAGTAGAACTAG 532
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 599 ATACTCATGATGTTATCAAGACATTAGACAAGACAATTTCTTCTCTTGAGGTAGAACTAG 658
Query 533 CTTCAGCTCGAGCAGCAAGATCTGACGGTAGAGATGGATCTCCAGCTGTTGCAAAATCAG 592
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 659 CTACAGCTCGAGCAGCAAGATCTGATGGTAGAGATGGATCTCCAGCTGTTGCAAAAACAG 718
Query 593 TAGCAGACCAATTGAAGATTCGGCCTCGGATGTTCTTTGTGATGGGAATCATGACTGCTT 652
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TAGCAGACCAATCGAAGATTCGGCCTCGGATGTTCTTTGTGATGGGAATCATGACTGCTT 778
Query 653 TCAGTAGCAGAAAACGAAGAGACTCAATAAGAGGAACCTGGCTTCCTAAAGGGGATGAAT 712
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 779 TCAGTAGCAGAAAACGAAGAGACTCCATAAGAGGAACTTGGCTTCCTAAAGGGGATGAAT 838
Query 713 TGAAAAGGCTAGCGACAGAGAAAGGAATCATTATGAGATTTGTCATAGGTCACAGTTCTT 772
||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 839 TGAAAAGATTAGAGACAGAGAAGGGAATCATTATGAGATTTGTTATAGGTCACAGTTCTT 898
Query 773 CTCCTGGAGGAGTCTTGGACCACACCATTGAAGCTGAAGAAGAACAACATAAGGACTTCT 832
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 899 CTCCTGGAGGAGTCTTGGACCACACCATTGAAGCTGAAGAAGAACAACACAAAGACTTCT 958
Query 833 TTCGCCTGAACCACATAGAAGGTTATCATGAATTATCATCTAAAACTCAAATATACTTCT 892
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 959 TTCGACTGAATCACATAGAAGGTTATCATGAATTATCATCTAAAACCCAAATATACTTCT 1018
Query 893 CATCTGCTGTTGCAAAATGGGATGCAGACTTCTACATCAAAGTGGATGATGATGTTCACG 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CATCTGCTGTTGCAAAATGGGATGCAGACTTCTACATCAAAGTGGATGATGATGTTCACG 1078
Query 953 TAAATCTCGGGATGCTTGGTTCTACATTGGCACGCCACAGATCAAAACCGCGAGTGTACA 1012
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1079 TAAATCTCGGAATGCTTGGTTCTACATTGGCTCGCCACAGATCAAAACCGCGAGTGTACA 1138
Query 1013 TTGGTTGCATGAAGTCTGGACCTGTCCTTGCTCAAAAAGGAGTCAAATACCATGAGCCAG 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTGGTTGCATGAAGTCTGGACCTGTCCTTGCTCAAAAAGGAGTCAAATACCATGAGCCAG 1198
Query 1073 AATATTGGAAGTTTGGTGAAGAAGGAAACAAATACTTCAGACATGCAACTGGACAAATCT 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AATATTGGAAGTTTGGTGAAGAAGGAAACAAATACTTCAGACATGCAACTGGACAAATCT 1258
Query 1133 ATGCCATCTCCAAAGATTTAGCAACTTATATCTCAGTAAACCGGCAACTACTTCACAAGT 1192
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1259 ATGCAATCTCCAAAGATTTAGCAACTTATATCTCAGTTAACCGGCAACTACTTCACAAGT 1318
Query 1193 ATGCAAATGAAGACGTCTCTTTAGGTTCTTGGTTCATCGGTCTCGATGTTGAACATATCG 1252
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1319 ATGCAAATGAAGATGTCTCTTTAGGTTCTTGGTTCATTGGTCTCGATGTTGAACATATCG 1378
Query 1253 ATGATCGAAGCCTCTGCTGCGGAACACCCTTGGATTGTGAGTGGAAGGGTCAAGCAGGAA 1312
| ||| ||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1379 ACGATAGAAGCCTCTGCTGTGGAACACCTTTAGATTGTGAGTGGAAGGGTCAAGCAGGAA 1438
Query 1313 ACCATTGCGCAGCATCGTTCGATTGGAGCTGTAGCGGAATCTGCAAATCTGTGGATAGAA 1372
||| |||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1439 ACCCTTGCGCAGCATCGTTCGATTGGAGCTGTAGTGGAATCTGCAAATCCGTAGATAGAA 1498
Query 1373 TGCTGGAAGTACATCAACGTTGTGGAGAAGGCGATGGAGCAATTTGGCACACAAGTTTCT 1432
|||| |||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 1499 TGCTTGAAGTACATCAACGTTGTGGTGAAGGCGATGGAGCAATTTGGCATAGTAGTTTCT 1558
Query 1433 AAA-ATT--CTCTCTGTAATGTATAGTTT-CAGCTTCTTCTTCTTCTTATAGATCATTAG 1488
||| ||| |||||||||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct 1559 AAATATTTTCTCTCTGTAATGTATAGTTTTCAGCTTCTTCTTCTTCTTATGGATTATTAG 1618
Query 1489 TATAGGTTCTGATTATGACTGATGTTCCATGTTTAACATT 1528
| |||||| ||||||||| ||||||| |||||||||||||
Sbjct 1619 TCTAGGTTATGATTATGATTGATGTTACATGTTTAACATT 1658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5