BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473481
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32990.1 | Symbols: PRPL11 | plastid ribosomal protein l11 |... 1330 0.0
> AT1G32990.1 | Symbols: PRPL11 | plastid ribosomal protein l11
| chr1:11955785-11957284 FORWARD LENGTH=856
Length=856
Score = 1330 bits (720), Expect = 0.0
Identities = 771/796 (97%), Gaps = 1/796 (0%)
Strand=Plus/Plus
Query 1 CTTCAGCTTTCACTTACCTTCTTCCTTCACATTGAATCAATGGCGTCTTCTTCTCTATCA 60
||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 4 CTTTAGCTTTCACTAACCTTCTTCCTTCACAGTGAATCAATGGCGTCTTCTTCTCTATCA 63
Query 61 ACTCTTTGTAGCTCAACTTCATCTTCTCTGCATCCCAACTCTAAGCTCTCACATTCTCTT 120
|||||||| ||||||||||| |||||||| ||||||||||| || |||||||||||||||
Sbjct 64 ACTCTTTGCAGCTCAACTTCTTCTTCTCTACATCCCAACTCCAAACTCTCACATTCTCTT 123
Query 121 TCAGCTAAATTATCCTCCAAAGCAAATGTTTCCGTTCAATTTCTGGGAAAGAAACAGTCT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 124 TCAGCTAAATTATCCTCCAAAGCAAATGTTTCCGTCCAATTTCTGGGAAAGAAACAGTCT 183
Query 181 CCACTTCTCTCCTCAACTCCGAGATTTCTCACTGTTATCGCCATGGCTCCACCTAAACCT 240
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CCGCTTCTCTCCTCAACTCCGAGATTTCTCACTGTTATCGCCATGGCTCCACCTAAACCC 243
Query 241 GGAGGCAAAGCTAAAAAAGTTGTGGGAGTTATCAAACTGGCTTTAGAGGCGGGAAAAGCA 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 244 GGAGGCAAAGCTAAAAAAGTTGTGGGAGTTATCAAACTTGCTTTAGAGGCGGGAAAAGCA 303
Query 301 ACTCCGGCGCCACCGGTTGGTCCGGCGCTTGGTTCTAAGGGAGTTAACATTATGGCTTTT 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 ACTCCGGCACCACCGGTTGGTCCGGCGCTTGGTTCTAAGGGAGTTAACATTATGGCTTTT 363
Query 361 TGCAAGGATTATAATGCAAGAACTGCTGATAAAGCTGGTTATATCATTCCTGTTGAAATC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TGCAAGGATTATAATGCAAGAACTGCTGATAAAGCTGGTTATATCATTCCTGTTGAAATC 423
Query 421 ACTGTCTTTGATGATAAGAGCTTCACGTTTATCCTCAAGACCCCGCCTGCTTCGGTTTTG 480
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 424 ACTGTCTTCGATGATAAGAGCTTCACGTTTATTCTCAAGACCCCGCCTGCTTCGGTTTTG 483
Query 481 TTGCTTAAGGCTGCAGGTGTTGATAAGGGATCAAAAGATCCACAGCAAGCTAAAGTTGGG 540
|||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 484 TTGCTTAAAGCTGCAGGTGTTGAGAAGGGATCAAAAGATCCACAGCAAGATAAAGTTGGG 543
Query 541 GTGATAACAATAGACCAGCTGCGCACAATTGCAGCAGAGAAGCTGCCCGACCTGAACTGC 600
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 544 GTGATAACAATAGACCAGCTACGCACAATTGCAGCAGAGAAGCTACCCGACCTGAACTGC 603
Query 601 ACGACCATTGAATCCGCTATGAGAATCATTGCAGGAACTGCAGCTAACATGGGGATAGAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 ACGACCATTGAATCCGCTATGAGAATCATTGCAGGAACTGCAGCTAACATGGGGATAGAC 663
Query 661 ATTGACCCTCCGATTCTTGAACCCAAAAAGAAAGCAGTTTTGTTGTAAAAGCCTGGTTGG 720
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 664 ATTGACCCTCCGATTCTTGAACCCAAAAAGAAAGCAGTTTTATTGTAAAAGCCTGGTTGG 723
Query 721 TAGTTTCTATTCGATAATGCCTTATTCGTTTCAAAGTGTAATTT-CCAAAATGACGCTTA 779
|||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 724 TAGTTTCTATTCCATAATGCCTTATTCGTTTCAAAGTGTAATTTTCCAACATGACGCTTA 783
Query 780 AGAGAGTTCGATGTAA 795
|||||||||||| |||
Sbjct 784 AGAGAGTTCGATATAA 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40036615159
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5