BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473482
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33020.1 | Symbols: | F-box and associated interaction doma... 1561 0.0
AT1G33010.1 | Symbols: | F-box and associated interaction doma... 368 8e-101
AT1G30935.1 | Symbols: | pseudogene, F-box protein family, con... 211 1e-53
AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-... 209 5e-53
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 202 9e-51
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 158 2e-37
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 106 7e-22
AT1G47350.1 | Symbols: | F-box associated ubiquitination effec... 67.6 3e-10
> AT1G33020.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11962746-11964832 FORWARD LENGTH=1647
Length=1647
Score = 1561 bits (845), Expect = 0.0
Identities = 1261/1452 (87%), Gaps = 68/1452 (5%)
Strand=Plus/Plus
Query 8 CAAAGTCCATCGGGAGGTGTCGTTGCGTGTCGAAGCTATGGAAGTCCATGCTTGGCCGCC 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 71 CAAAGTCCATCGGGAGGTGTCGTTGCGTGTCGAAGCTATGGAAGTCCATGCTTGGCCATC 130
Query 68 CAAATTTCACCGAGTTGTTCTTAACCAGGTCCTCAGATCATCCACGTCTCTTATTTGGGG 127
|| |||||||||||||||| || || |||||||| |||||||||||||||||||||||||
Sbjct 131 CATATTTCACCGAGTTGTTTTTGACAAGGTCCTCCGATCATCCACGTCTCTTATTTGGGG 190
Query 128 TCAAAAGAGAGGGTGAGTGGCTCTTCTTCTCGTCGCCTCAGTGTCAAAATATTTTTGGGA 187
||||||||||| || ||||||| |||||||||||||||||| |||| || ||| || ||
Sbjct 191 TCAAAAGAGAGCGTCAGTGGCTTTTCTTCTCGTCGCCTCAGCCTCAAGATCTTTATGAGA 250
Query 188 AGTCATCTC-------TTTT-A-GT-AAC--CGCCGATTTTCATATGAAGTTCTCTCAAG 235
||||||||| |||| | | ||| | | |||||||||||||| |||||| ||
Sbjct 251 AGTCATCTCTTGTAGATTTTCATATGAACTTCTCTGATTTTCATATGAACTTCTCTGGAG 310
Query 236 ACCTAGGCAGAACCAATTGTAGC-TATGTTTCTGGTTTGATCTATTTCCCTAG-TA--TG 291
|| || |||||| | | |||| | |||||||||||||| |||||||||||||| | |
Sbjct 311 ACATACGCAGAAACGAGTGTA-CATATGTTTCTGGTTTCATCTATTTCCCTAGAAAGCGG 369
Query 292 --C----A-GA--TGTGTGAATTCCGTGTGATATGTAACCCTATCACGGGAAAATATGCG 342
| | | ||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 370 ATCAAAAATTATTTGTGTGATTTCCGTGTGATATGTAACCCTATCACGGGACAATATGCG 429
Query 343 ATCTTACAACGGATAACGTACAAAGAGGTGAGAAGCTTCTTAGGGTTTGATCCGATTGAC 402
|||||||||| |||||| | | | ||| ||||||||| |||||||||||||||||||||
Sbjct 430 ATCTTACAACTGATAACATTCCACGAGAAGAGAAGCTTTTTAGGGTTTGATCCGATTGAC 489
Query 403 AAGCAATTCAAGGTATTGCGCATTAACCATA-AAT-ATTATAAGAATGGATACGTTCACC 460
||||||||||||||||||||||| || ||| ||| || | | || | | |||||||
Sbjct 490 AAGCAATTCAAGGTATTGCGCATGAA--ATATAATGATCGT-GGTATTG-T-TGTTCACC 544
Query 461 ATATTCTGACATTAGGACCTGGAAAAATGAGGTGGAGGAAGATCC-ACTGTCCCTTAGCC 519
||||||||||||||| |||||| |||||||||||||| || |||| | ||||||||||||
Sbjct 545 ATATTCTGACATTAGAACCTGGCAAAATGAGGTGGAGAAAAATCCGA-TGTCCCTTAGCC 603
Query 520 CATGTGCCTTTTC-GGGAAGAAATATGCGTCAATGGGGTTTTGTATTACTTAGCTCACCC 578
|||| || |||| ||||||| ||||||| ||||||||||||||||||||||||| | ||
Sbjct 604 CATGAACC-TTTCTGGGAAGAGATATGCGCCAATGGGGTTTTGTATTACTTAGCTGAACC 662
Query 579 AACTGAT-CATGGAG-CGTATGTGATATGTTGCTTTGATGTTAGGTCTGAGAAATTCAAA 636
||||||| | || | | |||||||||||||||||||||||| |||||||||||||||||
Sbjct 663 AACTGATGGA-GG-GTCTTATGTGATATGTTGCTTTGATGTTCGGTCTGAGAAATTCAAA 720
Query 637 TTTATTGATACAAATTGCTTTTGTGGTTTGC-C---TGAATTGAT-AAGGTACAAGGGTA 691
|||||||| |||| |||||| ||| ||| | | | ||||||| || || |||||||
Sbjct 721 TTTATTGACGCAAAATGCTTTGGTGATTT-CTCTATTCAATTGATCAA-TTATAAGGGTA 778
Query 692 AATTAGGTGCGATTATTTGGAAGTATGATACCGTCAG-TGGAAGGTGTACCGTTGAGTTG 750
|| |||||| ||||| ||||||||||||||||||| | ||||| | ||||||||||||||
Sbjct 779 AACTAGGTGGGATTAGTTGGAAGTATGATACCGTC-GATGGAAAGCGTACCGTTGAGTTG 837
Query 751 TGTATGTGGGTTCTAGAGGATGTCGAGAAACAGGAATGGTCCAAATATGTCCACCCTTTG 810
| ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct 838 TATATGTGGGTTCTAGAGGATGTCGAGAAACAGAAATGGTCCAAATACGTCTACCCTTTG 897
Query 811 CCGGAGAATTCCTACTACTATTCCGTTGCTGGAGTGACAGCTAAAGGTGATATTGTTTTT 870
|||| |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 898 CCGGGGAATTCCTACCATTATTCCGTTGCAGGAGTGACAGCTAAAGGTGATATTGTTTTT 957
Query 871 GTCAAGAAGTTA-ACATCTAAACCGTTTTATGTTTTCTACGTTAATCCCG-AAAGAAAAA 928
|||||| | ||| ||||||||||||||||||||||||||||| ||||||| |||| ||||
Sbjct 958 GTCAAG-ACTTACACATCTAAACCGTTTTATGTTTTCTACGTAAATCCCGAAAAG-AAAA 1015
Query 929 CTTTCCAACGCGTTGAAATCCATGGTAACCATGAAGTGTTTGATAGTAAGAATCTAGTTT 988
||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 1016 CTTTCCAACGCGTTGAAATCCATGGTAACCATGAAGTGTTTGACACTAATAATCTAGTTT 1075
Query 989 ACGCCTTCGTAGACCATGTAGAGGATCTTAAGTTTGATGTTATGAAGAAAACTTATGCTG 1048
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1076 ACGCCTTCGTAGACCATGTAGAGGATCTTCAGTTTGATGTTATGAAGAAAACATATGCTG 1135
Query 1049 CGACTTATATAAGCCCACCAGAACAGAAGCCAAAACCCAC-ATGCACAGAAACATCATCT 1107
| | ||||||||||||| |||||||||| |||||| | | | ||||||||||| |||
Sbjct 1136 CAAAACCTATAAGCCCACCAAAACAGAAGCCTAAACCCCCGA-GTACAGAAACATCGTCT 1194
Query 1108 AGAGAAGATCATCAAGGGTGGACATCAACATCGTCTAAAAAAGATCATCAAGTGAGGACC 1167
|||||||||||||||||||||| ||||| |||||||| |||| |||||||||||||||||
Sbjct 1195 AGAGAAGATCATCAAGGGTGGATATCAATATCGTCTAGAAAATATCATCAAGTGAGGACC 1254
Query 1168 ATTGCTTACCAGCAACAATTTCGTCCTACGTTTGAGAGCATTAACAAATTTAATGCTCTG 1227
|||||| ||| ||||||| ||||| || ||||||||||||||||||||| |||||||||
Sbjct 1255 ATTGCTCACCGGCAACAAGGTCGTCGTAAGTTTGAGAGCATTAACAAATTCAATGCTCTG 1314
Query 1228 TATCTTGATGATGATGATGAA-ATTACTGTTGCTCAACC-GCAACAAGATCTTCGTACTC 1285
||||||||||||| ||||||| | ||| ||||||| ||| ||||| ||||| | ||||
Sbjct 1315 TATCTTGATGATGGTGATGAAGA-TACCGTTGCTC-ACCAGCAACGAGATCACCATACT- 1371
Query 1286 TT-GGGGGCATTAGCAAATTTAAAGCTCAGCGTCTTTTAGATGATGATGAATTTACAGGT 1344
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 TTCAAGAGCATTAGCAAATTTAAAGCTCAGCGTCTTTTAGATGATGATGAATTTACAGGT 1431
Query 1345 GTCAAAACCAGTAAGTGCGACACTTCTCCTTTACAGGTTTCGTATGAAGTAACGGCGGTC 1404
||||||||||||||||| |||||||||| ||||||| | | || ||||||||||||
Sbjct 1432 GTCAAAACCAGTAAGTGTGACACTTCTCATTTACAGAA--C--A-GA-GTAACGGCGGTC 1485
Query 1405 CATGAGCTTCAT 1416
||||||||||||
Sbjct 1486 CATGAGCTTCAT 1497
> AT1G33010.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11959287-11960591 FORWARD LENGTH=1086
Length=1086
Score = 368 bits (199), Expect = 8e-101
Identities = 432/537 (80%), Gaps = 45/537 (8%)
Strand=Plus/Plus
Query 621 GTCTGAGAAATTCAAATTTATTGATACAAATTGCTTTTGTG-GTT---TGCCTG---AAT 673
||| |||||||| ||||||||||| |||| ||||||| || || || || |||
Sbjct 483 GTCAGAGAAATTGAAATTTATTGAGGCAAAATGCTTTTTTGCATTAGATG-ATGTACAAT 541
Query 674 TGATAAGGTACAAGGGTAAATTAGGTGCGATTATTTGGAAGTATGATACCGTCAGTGGAA 733
|||||| || |||||||||||||||| ||||| |||| | || | | ||| | | |
Sbjct 542 TGATAAACTATAAGGGTAAATTAGGTGGGATTAGTTGG-A--AT-A-A---TCA-T-G-A 590
Query 734 GG-TG-TACCGTTGAGTTGTGTATGTGGGTTCTAGAGGATGTCGAGAAACAGGAATGGTC 791
|| || | |||||||||||| ||||||||||||||| |||||||||||||| ||||||||
Sbjct 591 GGTTGCTCCCGTTGAGTTGTCTATGTGGGTTCTAGAAGATGTCGAGAAACAAGAATGGTC 650
Query 792 CAAATATGTCCACCCTTTGCCGGAGAA--T--T-CCTACT-ACT-ATT-C-CGTTGCTGG 842
|||| ||||| || |||||| |||| | | |||| | ||| || | || ||||||
Sbjct 651 CAAAAATGTCTACATTTTGCCTAAGAATGTAGTCCCTAATAACTGGTTGCACGCTGCTGG 710
Query 843 AGTGACAGCTAAAGGTGATATTGTTTTTGTCAAGAAG-T-TAACATCTAAACCGTTTTAT 900
|||||| | | |||||||||||| |||| || || | | || ||| || |||||| ||
Sbjct 711 AGTGACTGTTGAAGGTGATATTG-TTTTCTC-GGAGGCTGTAGTATCCAATCCGTTTGAT 768
Query 901 GTTTTCTACGTTAATCCCG-AAAGAAAAACTTTCCAACGCGTTGAAATCCATGGTAACCA 959
||||||||| ||||||||| |||| || ||| |||||| |||||||| |||| |||||||
Sbjct 769 GTTTTCTACTTTAATCCCGAAAAG-AACACTCTCCAACACGTTGAAACCCATTGTAACCA 827
Query 960 TGAAGTGTTTGATAG-TAAGAATCTAGTTTACGCCTTCGTAGACCATGTAGAGGATCTTA 1018
|||||||||||| | | ||||||||||| || ||| ||||||||||||||||||||||
Sbjct 828 TGAAGTGTTTGA-CGATGAGAATCTAGTTAACATCTTTGTAGACCATGTAGAGGATCTTA 886
Query 1019 AGTTTGATGTTATGAAGAAAACTTATGCTGCGACTTATATAAGCCCACCAGAACAGAAGC 1078
||||||||||||||||| ||| |||||||| || | |||| ||||| ||||||||||||
Sbjct 887 AGTTTGATGTTATGAAGCCAACATATGCTGCAACATCTATACGCCCAACAGAACAGAAGC 946
Query 1079 CA-AAACCCAC-ATGCACAGAAACATC-AT--CTAGAGAAGATCATCAAGGGTGGAC 1130
| |||||||| | ||||||||||||| || ||||| |||||||||||| | ||||
Sbjct 947 -ATAAACCCACGA-GCACAGAAACATCGATGTCTAGAAAAGATCATCAAGTGAGGAC 1001
> AT1G30935.1 | Symbols: | pseudogene, F-box protein family, contains
F-box domain Pfam:PF00646 | chr1:11017436-11018990 REVERSE
LENGTH=1555
Length=1555
Score = 211 bits (114), Expect = 1e-53
Identities = 620/849 (73%), Gaps = 96/849 (11%)
Strand=Plus/Plus
Query 22 AGGTGTCGTTGCGTGTCGAAGCTATGGAAG-TCCATGCTTGGCCGCCCAA-ATTTCACCG 79
|||||||||||||| ||||||| |||| || ||||| ||| ||| ||| ||||||||
Sbjct 70 AGGTGTCGTTGCGTTTCGAAGCGATGG-AGATCCATCCTTCGCC-ATCAAGTTTTCACCG 127
Query 80 -AGT-TGTTCTTAACCAGGTCCTCA-GATCATCCACGTCTCTTATTTGGGGT-CAAAAGA 135
| | | ||| |||| || ||| | | || ||||||||||||| | || || ||| | |
Sbjct 128 AACTCT-TTC-TAACAAGATCC-AACGCTCGTCCACGTCTCTTAATCGGTGTACAACA-A 183
Query 136 GAGGGTGAGT-G-GCTCTTCTTCTCGTCGCCTCAGTGTCAAAATATTTTTGGGAAG-TCA 192
|| ||||||| | ||| ||| |||| |||||||| ||| ||| | | | || ||
Sbjct 184 GACGGTGAGTGGAGCT-TTC-TCTCAACGCCTCAGCCTCAGAATCGTCACGAG-AGTTCG 240
Query 193 TCTCTTTTAGTA---ACCGCCGATTTTCATATGAAGTTCTC-TCAAGACCTAGGCAGA-A 247
|||||| ||||| ||||||||||||||| ||||| || || || | ||||| |
Sbjct 241 TCTCTTGTAGTAGCTGCCGCCGATTTTCATACCAAGTTTTCTTC-AGGGAAAAGCAGACA 299
Query 248 CCAATTGTAGCTATGTTTCTGGTTTGATCTA--TTT-CCCTA-G-T-AT-GC--A-GATG 297
| | || | ||||| |||||||||||||| ||| | | | || | | || |
Sbjct 300 TC-AGTGCACCTATGCCTCTGGTTTGATCTATTTTTAAAAAATGTTCATCCCAAAGGAAG 358
Query 298 -TGTGAATTC----CGTGTGATATGTAACCCTATCACGGGAAAATATGCGATCTTACAAC 352
|| | || | |||||| | ||| ||||| |||| || | |||| |||||||| |
Sbjct 359 ATGAGGATGCAAAGCGTGTGTTGTGTGACCCTCTCACTGGCCAGTATGTGATCTTAC--C 416
Query 353 GGATAACGTACA--AAGAGGTGAG-A-AGCT-TCTTAGGGTTTGATCCGATTGACAAGCA 407
| ||| || | | | ||| | | |||| | |||||||||||||||||||| ||| |
Sbjct 417 TG--AACTTAGAGTAGGTGGTTCGTATAGCTAT-TTAGGGTTTGATCCGATTGATAAGGA 473
Query 408 ATTCAAGGTATTGCGCAT-TA-ACCAT-AAATATTATA----AGAATGGAT-ACGTTCAC 459
||||||||||||| ||| | | | | || ||||| ||| |||| | | |||
Sbjct 474 ATTCAAGGTATTGTTCATGGATA-CTTGTGATTTTATAGCTTCGAA-GGATGAAGATCAT 531
Query 460 CATATTCTGACATTAGGACCTGGAAAAATGAGGTGGAGGAAGATCCACTGTCC-CTTAGC 518
||||| ||||||| ||| ||||| || ||| ||||||||||||||| ||||| ||| |
Sbjct 532 TATATTTTGACATTGGGAACTGGAGAATTGAAGTGGAGGAAGATCCAATGTCCTTTTA-C 590
Query 519 CCATGTGCCTTTTCGGGAAGA-AATATGCGTCAATGGGGTTTTGTATTACT-TAGCTCAC 576
|||| ||||||| ||| ||| |||||| | ||||||||||||||||||| | ||| |
Sbjct 591 ACATGAGCCTTTTTGGG-AGAGGATATGCATTAATGGGGTTTTGTATTACTCT-GCTTA- 647
Query 577 CCA-ACTGA-TC--ATGG-A-G-CGT-ATGTGATATG-TTGCTTTGATGTTAGGTCTGAG 627
| | |||| || |||| | | | | || | ||| | ||||||||||||||||||||||
Sbjct 648 CTATTCTGATTCTAATGGAAGGTC-TCATCTCATA-GCTTGCTTTGATGTTAGGTCTGAG 705
Query 628 AAATTCAAATTT-ATTGATACAAATTGCTTTTGTGGTTTGCCTGAATTGATAAGGTACAA 686
|||||||| ||| || | ||||| | | | | | | | | ||||||| || ||
Sbjct 706 AAATTCAA-TTTCATAGCCACAAAA--CATC-G-G-TACGA-TCAGTTGATAAACTATAA 758
Query 687 GGGTAAATTAGGTGCGATTA-TTTGGAAGTATGATACCGTCA-GT-GGAAGG-TGTACC- 741
||| |||||| ||| ||||| |||||| ||||| || | || || || || | | ||
Sbjct 759 GGGGAAATTATGTGGGATTAATTTGGA-GTATGCTAG-G-CATGTTGGT-GGATTT-CCT 813
Query 742 GTTGAGTTGTGTATGTGGGTTCTAGAGGATGTCGAGAAACAGGAATGGTCCAAATATGTC 801
||| ||||| ||||||||||| |||||||||||||||||| ||||||||| ||| |||||
Sbjct 814 GTTAAGTTGAGTATGTGGGTTTTAGAGGATGTCGAGAAACCGGAATGGTCGAAACATGTC 873
Query 802 CACCCTTTG 810
|| |||||
Sbjct 874 TACTCTTTG 882
> AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-11005444
REVERSE LENGTH=1203
Length=1203
Score = 209 bits (113), Expect = 5e-53
Identities = 822/1141 (72%), Gaps = 141/1141 (12%)
Strand=Plus/Plus
Query 8 CAAAGTCCATCGGGAGGTGTCGTTGCGTGTCGAAGCTAT-GGAAGTCCATGCTT-GGCCG 65
||||||| |||| ||||||||| |||||||||||||||| |||| |||||| || | | |
Sbjct 71 CAAAGTCAATCGCGAGGTGTCGCTGCGTGTCGAAGCTATGGGAA-TCCATGATTCGTCAG 129
Query 66 CCCAAATTTCACCGAGTTGTTCTTAACCAGGTCCTCAGATCATCCACGTCTCTTATTTGG 125
|| | ||||||||||||||| | |||||||| ||| || ||||| ||||||| | |
Sbjct 130 -TCATACTTCACCGAGTTGTTCCTCACCAGGTCTTCATCTCGTCCACATCTCTTAATCGC 188
Query 126 GGTC-AA-AAGAGAGGGTGAGTGGCTCTTCTTCTCGTCGCCTCAGTGTCAAAATATT-T- 181
||| || |||| |||| |||||| |||||||||| |||||| | |||| ||| |
Sbjct 189 TGTCGAACAAGA-AGGG-GAGTGGAAATTCTTCTCGTTGCCTCAACCT-AAAA-ATTATC 244
Query 182 TTGGGAAGTCATCTCTTTTAGTAACCGCCGATTTTCATATGAAGTTCTCTCAAGACCTA- 240
|||||||||| |||||| ||||| |||| || | ||| |||| |||| | ||||| |
Sbjct 245 TTGGGAAGTCGTCTCTTGTAGTAGCCGCTAATCTCCATCTGAAATTCTTTGAAGACAAAC 304
Query 241 G-GCAGAAC-CAATTGTAGCTATGTTTCTGGTTTGATCTATTTCCCTAGTAT---G---C 292
| || ||| | |||||| |||| |||| |||||||||||||||||| ||| | |
Sbjct 305 GCCCACAACACGGTTGTAGTTATGCTTCTAGTTTGATCTATTTCCCTAATATGACGATCC 364
Query 293 ---AG-A-TGTG-TGA--A-TTCCGTGTGATATGTAACCCTATCAC-GGG-A--A--AAT 337
|| | ||| || | || |||||||||||||||||| ||| ||| | | |
Sbjct 365 GAAAGAAGGGTGACGATCACTTGGGTGTGATATGTAACCCTAGCACAGGGCAGTATGGGT 424
Query 338 ATGCGATCTTACAACGGATAAC--G--TACAAAGAG-GTG----A--G-AAGCTTCTTAG 385
||| |||||||| || | || | | | ||||| ||| | | || || ||||
Sbjct 425 ATGTGATCTTACCAC-CTTTACTGGATTTC-AAGAGCGTGCCTTACGGTAA-ATTTTTAG 481
Query 386 GGTTTGATCCGATTGACAAGCAATTCAAGGTATTG--CGC-ATTAACC-ATAAATATT-A 440
|||||||||||||||||||||||||||||||||| | | || | | || | || |
Sbjct 482 GGTTTGATCCGATTGACAAGCAATTCAAGGTATTAATCCCGAT-ATTCGAT---T-TTGA 536
Query 441 TAAGA-ATGGATACGT-TCACCATATTCTGACATTAGGACCTGGAAAAA-T-GAGGTGGA 496
||| | || | ||| ||| |||||||| ||||||||| ||| ||| | | | ||||||
Sbjct 537 TAA-ACATCAA-ACGGATCATCATATTCTTACATTAGGAGCTG-AAACAGTTG-GGTGGA 592
Query 497 GGAAGATCCACTGTCCCTTA-GCCCATGTGCCTTTTCG----GGAAGAAATATGCGTCAA 551
|||||||||| | ||||||| || || | ||| | | |||| || | ||| ||||
Sbjct 593 GGAAGATCCAATCTCCCTTACGCT-ATCTTCCTCATAGTAATGGAACAATT-TGCATCAA 650
Query 552 TGGGGTTTTGTATTACTTAGCTCACCC-AACTGAT-CA-TGGAGCGTA-TGTGATATGTT 607
|||| ||||||||||| ||||| | || | || || |||| | |||| || |||
Sbjct 651 TGGGATTTTGTATTACCTAGCTAAAATTAATT-ATGCAATGGATAAAAATGTGCTA-GTT 708
Query 608 -GCTTTGATGTTAGGTCTGAGAAATTCAAATTTATT-GA-T-A-CAAATTGCTTTTGTGG 662
|||||||||||||||||||||| || ||| | | | | || || || | |
Sbjct 709 TGCTTTGATGTTAGGTCTGAGAATTTTGTGTTTCTACGTCTTAACACATA-CTGCTCT-- 765
Query 663 TTTGCCTGAATTGATAAGGTACAAGGGTAAATTAGGTGCGATTATTTG-GAAGTATGAT- 720
| | | | ||||| ||| || |||||||||||||| ||||| | || ||||| |
Sbjct 766 TCTAC-TAAATTGGTAAACTATAAGGGTAAATTAGGCATGATTAATCAAGA-GTATGTTG 823
Query 721 ACCGTCAGTGGAAGGTGTACCGTTGA-GTTGTGTATGTGGGTTCTAGAGGATGTCGAGAA 779
| | | ||| ||| | || | | ||| || ||||||||||||||||||||| |||
Sbjct 824 AT-G--A-TGGT-GGTTTTCCCCTAAAGTTAAGTGTGTGGGTTCTAGAGGATGTCG-GAA 877
Query 780 ACAG--GAATGGTCCAAATATGTCCACCCTTTGCCGGA-GA-A-T----TCC-T-AC-T- 826
| || |||||||| | ||||||| || ||||| ||| || | | || | | |
Sbjct 878 A-AGAAGAATGGTCGACATATGTCTACACTTTGAGGGATGATAATAAAGTCGATCAGGTT 936
Query 827 AC-TAT--TC-C---GTTGCTGGAGTGACAGCTAAAGGTGATATTGTTTTTGTCAAGAAG 879
| ||| || | |||| ||| ||||| ||| |||||| |||||||| || ||||||
Sbjct 937 AAATATAATCTCTCCGTTGTTGGGGTGACTGCTTCAGGTGAAATTGTTTTGGTGAAGAAG 996
Query 880 T-T-AA-CATCTAAA-CCGTTTTATGTTTTCTACGTTAATCCCGAAAGAAAA-ACTTTCC 934
| || || || || || ||||||||||| ||| |||| ||||| | |||| ||| ||
Sbjct 997 ACTCAAACA-CTTAAGCCATTTTATGTTTTATACTTTAACCCCGACA-AAAATACTCTCT 1054
Query 935 -AACGCGTTGAAATCCATGG--TA-ACCATGAAGTGTTTGATAGTA-AGA-ATCTAGTTT 988
||| |||||| || | || || ||| | | ||| || ||| | | | | |||
Sbjct 1055 TAACT-GTTGAAGTCAAAGGACTACACCGGGGATTGTATGCC-GTACACAGA---A-TTT 1108
Query 989 ACGCCTTCGTAGACCATGTAGAGGATCTTAAGTTTGATGTTATGAAGAAAACTTATGCTG 1048
||||||| ||||||||||||||||||||| ||||| || ||||||||| ||| |||||||
Sbjct 1109 ACGCCTTTGTAGACCATGTAGAGGATCTTGAGTTTAATATTATGAAGACAACATATGCTG 1168
Query 1049 C 1049
|
Sbjct 1169 C 1169
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 202 bits (109), Expect = 9e-51
Identities = 488/659 (74%), Gaps = 74/659 (11%)
Strand=Plus/Plus
Query 460 CATATTCTGACATTAGGACCTGGAAAA-ATGAGGTGGAGGAAGA-TCCACTGTCCCTTAG 517
|||||||||||||||||| || ||||| ||||||||||| ||| | | ||||||||
Sbjct 319 CATATTCTGACATTAGGAACT-GAAAATGTGAGGTGGAGGGAGATTATA-TGTCCCTTTT 376
Query 518 CCCATG-TGCCTTTTCGGG--AAG-AAATATGCGTCAATGGGGTTTTGTATTAC-TTAGC 572
| ||| | ||| ||||| ||| |||||| |||||||||||||||||||| | ||
Sbjct 377 CATATGAT-CCTCCTCGGGAAAAGCCGATATGCATCAATGGGGTTTTGTATTACATAAG- 434
Query 573 TCACCCAACTGATCATGGAGCGTATGTGATATGTTGCTTTGATGTTAGGTCTGAGAAATT 632
| | | | || || | | | | ||| ||||||||||||||||||||||||||||
Sbjct 435 TGTCGGTAGTTATTATTCA-C---T-T-ATAGGTTGCTTTGATGTTAGGTCTGAGAAATT 488
Query 633 CAA---ATT-TAT-TGA-TACAAATTGCTTTTGTGGTTTGCCT-G--AATTGATAAGGTA 683
||| || ||| | | || |||||||| | | || | ||||||||| ||
Sbjct 489 CAAGTTTTTATATCTAAGCCCAGATTGCTTTCCAAACTGGTCTAGAAAATTGATAAACTA 548
Query 684 CAAGGGTAAATTAGGTGCGATTAT-TTGGAAGTATGATACCGTCAGTGGAAGG-TGTACC 741
|||||||||||||||| || ||| |||||| || || ||| ||| || | | ||
Sbjct 549 TAAGGGTAAATTAGGTGTGACTATAATGGAAG-AT--TA---TCA-TGG-TGGATTTCCC 600
Query 742 GTTGAGTTGTGTATGTGGGTTCTAGAGGATGTCGAGAAACAGGAATGGTCCAAATATGTC 801
|| ||||| ||||||||||||||||||||||||||||| |||||||| | | ||||| |
Sbjct 601 CTTAAGTTGCGTATGTGGGTTCTAGAGGATGTCGAGAAAGAGGAATGGACGAGATATG-C 659
Query 802 C-ACCCTTTG---CCGGAGAAT----TCCT--AC--T-ACTAT-TCC--GTTGCTGGAGT 845
| || ||||| || |||||| || || | ||||| | |||| ||| |
Sbjct 660 CTACACTTTGAGGCCTGAGAATAAAGTCGAGGACAATGACTATGTATATGTTGTTGGGGC 719
Query 846 GACAGCTAAAGGTGATATTGTTTTTGTC-AAGA-AGT-TAACATCTAAACCGTTTTATGT 902
|| ||| |||||| |||||||| | | || | || | ||| |||||||||||||||
Sbjct 720 AACTGCTTCAGGTGAAATTGTTTT-GACGAA-ACAGAATG-CATATAAACCGTTTTATGT 776
Query 903 TTTCTACGTTAATCCCGAAAGAAAAACTTTCC-AACGCGTTGAAATCCATGGTAACC-AT 960
||||||| ||| ||| ||||| || ||| ||| || ||||||||||||| ||| |
Sbjct 777 TTTCTACTTTAGTCCTGAAAGGAACACTCTCCTAA-GCGTTGAAATCCAAGGTGTTGGA- 834
Query 961 GAAG--TG-TTTGATAGTAAGAATCTAGTTTACGCCTTCGTAGACCATGTAGAGGATCTT 1017
|||| || ||| || | | ||| |||||| ||| ||||||||||| |||||||||
Sbjct 835 GAAGAATGGTTT--TA-TCATAAT---GTTTACTACTTTGTAGACCATGTCGAGGATCTT 888
Query 1018 AAGTTTGATGTTATGAAGAAAACTTATGCTGCGA-CTTATATAAGCCCACCAGAACAGA 1075
| ||||||||||||||||| ||| ||||||| || | | || |||||||||| ||||||
Sbjct 889 AGGTTTGATGTTATGAAGACAACATATGCTG-GAACATCTAGAAGCCCACCAAAACAGA 946
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 158 bits (85), Expect = 2e-37
Identities = 338/448 (75%), Gaps = 65/448 (15%)
Strand=Plus/Plus
Query 526 CCTTTTCGGGAAGAAATATGCGTCAATGGGGTTTTGTATTACT-TAGCTCACCCAACTGA 584
|||||| || |||| |||||| ||||||||||||||||||||| | ||| | | |
Sbjct 6 CCTTTTTGGAAAGAGATATGCATCAATGGGGTTTTGTATTACTCTGGCT-A--GTTCAGC 62
Query 585 TCATGG--AGCGTATGTGATATGTTGC-TTTGATGTTAGGTCTGAGAAATTCAAATTTAT 641
|||||| | | | | ||||| ||| | |||||| ||||||||||||||||||| |||||
Sbjct 63 TCATGGATATC-T-TCTGATA-GTTTCTTTTGATTTTAGGTCTGAGAAATTCAATTTTAT 119
Query 642 ---TG-ATACAA-ATTGCTTTTGTGGTTTGCCTGAATTGATAAGGTACAAGGGTAAATTA 696
|| || ||| || ||||| | | | | ||||||||| ||||| |||||||||
Sbjct 120 CAATGCAT-CAAGCTTCCTTTTTTCATCT-ACAAAATTGATAAACTACAAAGGTAAATTA 177
Query 697 GGTGCGATT-ATTTGGAAGTATGATACCGTCAGTGGAAGGTG--TA--CCGTTGAGTTGT 751
|||| |||| |||||| |||| | | ||| ||| |||| || ||||||||||
Sbjct 178 GGTGGGATTGATTTGG-CGTAT-A-A---TCA-TGG-TGGTGTATATCCCGTTGAGTTAC 229
Query 752 GTATGTGGGTTCTAGAGGATGTCGAGAAACAGGAATGGTCCAAATATGTCCACCCTTTGC 811
||||||||||||||||||||||||||||||| |||||||| | | |||| || ||||||
Sbjct 230 GTATGTGGGTTCTAGAGGATGTCGAGAAACACGAATGGTCGAGACATGTTTACTCTTTGC 289
Query 812 CGGAGA--ATT------C--C--T--A-CTAC--TATTC-CGTTGCTGG-AGTGACA-GC 851
|||||| ||| | | | | |||| |||| ||||| ||| | ||| | ||
Sbjct 290 CGGAGACCATTGAATTTCAGCAGTGTAACTACAATATTTGCGTTGGTGGGA-TGA-ATGC 347
Query 852 TAAAGGTGATATTGTTTTT--G---TCA-AGA-AGT-TAACATCTAAACCGTTTTATGTT 903
|| |||||| ||||||||| | ||| | | | | || |||| |||||||||||||||
Sbjct 348 TATAGGTGAAATTGTTTTTTCGGAGTCATATATA-TCTA-CATCCAAACCGTTTTATGTT 405
Query 904 TTCTACGTT-AATCCCGAAA-GAAAAAC 929
|||||| || |||||||||| |||||||
Sbjct 406 TTCTAC-TTCAATCCCGAAAAGAAAAAC 432
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 106 bits (57), Expect = 7e-22
Identities = 258/350 (74%), Gaps = 33/350 (9%)
Strand=Plus/Plus
Query 313 ATATGTAACCCTATCACGGGAAAATATGCGATCTTA-C-AA-CGGATA-ACGTACA-AAG 367
||||||||||| | ||| ||| |||| ||||||| | || ||| || || |||| ||
Sbjct 373 ATATGTAACCCCAACACAGGACGGTATGTGATCTTACCTAATCGG-TATACTTACAGAA- 430
Query 368 AGGTGAGA-AGCTTCTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTG-CGCAT 425
||| | | ||||| || |||||||| ||||||| |||||||| ||||| |||| | |||
Sbjct 431 AGGCG-TATAGCTTTTTCGGGTTTGACCCGATTGGCAAGCAATACAAGGCATTGTC-CAT 488
Query 426 TAACCATAAATATTATAAGAATGGATACGTTCACCATATTCTGACATTAGGACCTGGAAA 485
| | || | | | | ||| | || ||| | || || ||||||||| |||| |
Sbjct 489 T--GCTTATCCA-TCTGATCCTGG-T-CG-TCATAAAATACTTACATTAGGAGATGGAGA 542
Query 486 AATGAGGTGGAGGAAGATCCACTGTCCCTTAGCCCATGTGCCT--T-TT--CGG-GAAGA 539
||| ||||| |||||| | |||||| || ||| | ||| | || || || |
Sbjct 543 TCTGACATGGAGAAAGATCAAATGTCCCGTA--CCACG-ACCTGGTATTAAGGGTGATGG 599
Query 540 AATATGCGTCAATGGGGTTTTGTATTACTTAGCTCACCCAACTGATCATGGAG-C-G--T 595
|||||| |||||||||||||||||| ||||||| | || ||| | | ||| | | |
Sbjct 600 GATATGCATCAATGGGGTTTTGTATTTCTTAGCTGAGAGAAATGAGC-TAGAGTCTGATT 658
Query 596 ATGTGATATG-TTGCTTTGATGTTAGGTCTGAGAAATTCAAATTTATTGA 644
|||||||| | ||||||||||||||||||||||||||||| || ||||||
Sbjct 659 ATGTGATA-GTTTGCTTTGATGTTAGGTCTGAGAAATTCACATATATTGA 707
> AT1G47350.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:17358447-17360722 REVERSE LENGTH=1587
Length=1587
Score = 67.6 bits (36), Expect = 3e-10
Identities = 42/45 (93%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 376 AGCTTCTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTG 420
||||| || |||| |||||||||||||||||||||||||||||||
Sbjct 676 AGCTTTTTCGGGTATGATCCGATTGACAAGCAATTCAAGGTATTG 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75049814775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5