BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473483
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33040.1 | Symbols: NACA5 | nascent polypeptide-associated c... 1118 0.0
> AT1G33040.1 | Symbols: NACA5 | nascent polypeptide-associated
complex subunit alpha-like protein 5 | chr1:11966470-11967843
FORWARD LENGTH=854
Length=854
Score = 1118 bits (605), Expect = 0.0
Identities = 746/812 (92%), Gaps = 18/812 (2%)
Strand=Plus/Plus
Query 1 ATCTCCTTTATTTGTTTCATCTGTCACTCACTGTTAAGGAAGGTCTTTTGGTTCTCGCTG 60
|||| |||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 1 ATCTACTTTATTTGTTTCATCTGTCACTCACTGTTAAGGAAGGTC-------T-T-GCTG 51
Query 61 CGCTaagaagaagaaaagaagaagaaagaTGCCAGGAGCAATTGTGGAGGAAGAGAGATC 120
||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 52 CGCTAAG-A-AAGAAAAGAAGAAGAAAGATGCCAGGAGCAATTGTGGAGGAAGAGAAATC 109
Query 121 TCAGATTGAATCCATTAAAGAGCAATTGAAACTCGAGAAGGAAGATGATGTTGTTGTGGA 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 TCAGATTGAATCCATCAAAGAGCAATTGAAACTCGAGAAGGAAGATGATGTTGTTGTGGA 169
Query 181 GGATGTGAAAGACGGAGAGGAAGAAGACGACGACGAAGACGATGAGGACGTCGAAGGTGA 240
|||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 170 GGATGTGAAAGACGGAGAGGAAGAAGACGATGATGAAGACGATGAGGACGTCGAAGTTGA 229
Query 241 AGGAGAAGGTGGAAATGAGAATTCAAAGCAAAGTAGAAGCGAGAAGAAAAGTCGAAAAGC 300
||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 230 AGGGGAAGGTGGAAATGAGAATGCAAAGCAAAGTAGAAGCGAGAAGAAAAGTCGCAAAGC 289
Query 301 TGTTCTAAAGCTTGGCATGAAACCTGTCTCAGATGTCAGCAGAGTGACAATCAAAAGAAC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 290 TGTTCTAAAGCTTGGCATGAAACCTGTCTCAGATGTCAGCAGAGTGACAATCAAAAGAGC 349
Query 361 CAAGAATGTGTTATTTGTTATCTCGAAGCCAGATGTTTACAAGAGTCCCAATGCCGACAC 420
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 350 CAAGAATGTGTTATTTGTCATCTCGAAGCCAGATGTTTACAAGAGTCCCAATGCAGAGAC 409
Query 421 TTACGTCATTTTTGGAGAGGCTAAGATCGACGATCTGAGCTCTCAGCTACAAACCCAGGC 480
||||||||||||||||||||| ||| |||||||| |||||||||||||||| || || ||
Sbjct 410 TTACGTCATTTTTGGAGAGGCCAAGGTCGACGATTTGAGCTCTCAGCTACAGACTCAAGC 469
Query 481 TGCTCAGAGGTTCAAGATGCCTGACATGGCATCTATGCTCCCTAATGATGCTTCTGAAGC 540
|||||||||||| ||||||||||| || |||| ||||| ||||| | | |||||||||
Sbjct 470 TGCTCAGAGGTTTAAGATGCCTGATGTGACATCCATGCTACCTAACGCCGGTTCTGAAGC 529
Query 541 TGCCATGGCTCCACTAGCAGAGGAAGAAGACGAAGAAGATGTTGATGACACTGGCGTTGA 600
| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 530 TACCATGGCTCCACTAGCAGAGGAAGAAGACGAAGACGATGTTGATGACACTGGTGTTGA 589
Query 601 AGCTAGAGACATTGATCTTGTCATGACCCAAGCAGGTGTCTCTAAGGCCAAAGCCGTCAA 660
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 590 AGCCAGAGACATTGATCTTGTCATGACCCAAGCAGGTGTCTCCAAGGCCAAAGCCGTCA- 648
Query 661 G-GCTCTAAAGGCTAGTGATGGCGATATCGTTTCAGCCATTATGGAACTCACTACATAGA 719
| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 649 GTGCTCTAAAGGCTAATGATGGGGATATCGTTTCAGCCATTATGGAACTCACTACATAGA 708
Query 720 GTTGAGTAGTAGTA-CAATTGTCGTTT-TGCTTTTGTTTCATTATTTCTTCTCTCAGCTA 777
|||||||||||| | | | | || ||||||||||||||| |||||| |||||||||
Sbjct 709 GTTGAGTAGTAG-AGCCACC-TAAATTGTGCTTTTGTTTCATTGTTTCTTGTCTCAGCTA 766
Query 778 CTATTTTCTTGGAACATTTATTGATTGTGTCT 809
| |||||||| ||||||| ||| ||| |||||
Sbjct 767 CCATTTTCTTTGAACATT-ATTAATTATGTCT 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5