BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473492
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33140.1 | Symbols: PGY2 | Ribosomal protein L6 family | chr... 1181 0.0
AT1G33120.1 | Symbols: | Ribosomal protein L6 family | chr1:12... 1105 0.0
> AT1G33140.1 | Symbols: PGY2 | Ribosomal protein L6 family | chr1:12023275-12024783
FORWARD LENGTH=951
Length=951
Score = 1181 bits (639), Expect = 0.0
Identities = 703/735 (96%), Gaps = 0/735 (0%)
Strand=Plus/Plus
Query 1 GAGAGCCGTCAGAGAGAGCAAAACAAAGATCGGAAAAGATGAAGACGATTCTTTCTTCCG 60
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 48 GAGAGCCGTCAGGGAGAGCAAAACAAAGATCGGAGAAGATGAAGACGATTCTTTCTTCCG 107
Query 61 AGACGATGGACATCCCCGACAGCGTTACCATCAAGGTTCACGCTAAAGTGATCGAAGTCG 120
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 108 AAACGATGGACATCCCCGACAGTGTTACCATCAAGGTTCACGCTAAAGTGATCGAAGTCG 167
Query 121 AAGGACCTCGCGGGAAGCTTGTTCGCGATTTCAAGCATCTCAACCTCGATTTCCAGCTGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 AAGGACCTCGCGGGAAGCTTGTTCGCGATTTCAAGCATCTCAACCTCGATTTCCAGCTGA 227
Query 181 TCAAAGACCCTGAGACTGGGAAGAAGAAGCTTAAGATCGATTCGTGGTTTGGATCACGCA 240
|||| || || |||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 228 TCAAGGATCCAGAGACTGGAAAGAAGAAGCTTAAGATCGATTCGTGGTTTGGAACACGCA 287
Query 241 AAACCAGCGCCTCCATCAGAACCGCTCTTAGTCACGTTGATAACCTCATCTCCGGTGTTA 300
||||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||
Sbjct 288 AAACCAGCGCCTCCATCAGAACCGCTCTTAGCCACGTCGATAACTTGATCTCCGGTGTTA 347
Query 301 CCAGAGGTTTCCGTTACAAGATGAGGTTCGTGTACGCTCATTTTCCGATCAACGCCTCTA 360
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 348 CCAGAGGTTTCCGTTACAAGATGAGGTTCGTGTACGCCCATTTTCCCATCAACGCCTCCA 407
Query 361 TTGGTGGTGATGGAAAGTCTATCGAGATCCGTAACTTCCTTGGCGAGAAGAAGGTGAGGA 420
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 TCGGCGGTGACGGAAAGTCTATCGAGATCCGTAACTTCCTTGGCGAGAAGAAGGTGAGGA 467
Query 421 AGGTAGAGATGTTGGATGGTGTAACCATTGTTCGATCTGAGAAGGTCAAGGATGAGATTG 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 468 AGGTAGAGATGTTGGATGGTGTAACCATTGTTCGATCTGAGAAGGTGAAGGATGAGATTG 527
Query 481 TTCTTGATGGTAACGATATCGAGCTTGTTTCAAGGTCATGCGCTCTGATCAACCAGAAAT 540
||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 528 TTCTTGACGGTAACGACATCGAGCTTGTTTCAAGGTCATGCGCTTTGATCAACCAGAAAT 587
Query 541 GTCACGTGAAGAAGAAGGATATCAGGAAGTTCCTTGACGGTATCTATGTTAGCGAGAAAA 600
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 588 GTCACGTGAAGAAGAAGGATATCAGGAAGTTTCTTGATGGTATCTATGTTAGCGAGAAAA 647
Query 601 GCAAGATCGTAGAGGAAGAATGAATGCTCATTTCCTCATCTTAGCTCCTATTTCTTGTCT 660
||||||||||||||||||||||||||| ||| || || ||||||||||||||||||||||
Sbjct 648 GCAAGATCGTAGAGGAAGAATGAATGCCCATATCATCGTCTTAGCTCCTATTTCTTGTCT 707
Query 661 CTTGAATGTTAGTTTCGTTTTATGGACCAAATCTACCGGTGTTGCAAAACTCTGGCTATC 720
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 708 TTTGAATGTTAGTTTCGTTTTATGGACCAAATCCACCGGTGTTGCAAAACTCTGGCTATC 767
Query 721 CCTTGTTCCTTTTTT 735
||||||||| |||||
Sbjct 768 CCTTGTTCCCTTTTT 782
> AT1G33120.1 | Symbols: | Ribosomal protein L6 family | chr1:12010901-12012524
FORWARD LENGTH=971
Length=971
Score = 1105 bits (598), Expect = 0.0
Identities = 676/713 (95%), Gaps = 7/713 (1%)
Strand=Plus/Plus
Query 1 GAGAGCCGTCAGAGAGAGCAAAACAAAGATCGGAAAAGATGAAGACGATTCTTTCTTCCG 60
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 48 GAGAGCCGTCAGGGAGAGCAAAACAAAGATCGGAGAAGATGAAGACGATTCTTTCTTCCG 107
Query 61 AGACGATGGACATCCCCGACAGCGTTACCATCAAGGTTCACGCTAAAGTGATCGAAGTCG 120
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 108 AAACGATGGACATCCCCGACAGTGTTACCATCAAGGTTCACGCTAAAGTGATCGAAGTCG 167
Query 121 AAGGACCTCGCGGGAAGCTTGTTCGCGATTTCAAGCATCTCAACCTCGATTTCCAGCTGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 AAGGACCTCGCGGGAAGCTTGTTCGCGATTTCAAGCATCTCAACCTCGATTTCCAGCTGA 227
Query 181 TCAAAGACCCTGAGACTGGGAAGAAGAAGCTTAAGATCGATTCGTGGTTTGGATCACGCA 240
|||| || || |||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 228 TCAAGGATCCAGAGACTGGAAAGAAGAAGCTTAAGATCGATTCGTGGTTTGGAACACGCA 287
Query 241 AAACCAGCGCCTCCATCAGAACCGCTCTTAGTCACGTTGATAACCTCATCTCCGGTGTTA 300
||||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||
Sbjct 288 AAACCAGCGCCTCCATCAGAACCGCTCTTAGCCACGTCGATAACTTGATCTCCGGTGTTA 347
Query 301 CCAGAGGTTTCCGTTACAAGATGAGGTTCGTGTACGCTCATTTTCCGATCAACGCCTCTA 360
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 348 CCAGAGGTTTCCGTTACAAGATGAGGTTCGTGTACGCCCATTTTCCCATCAACGCCTCCA 407
Query 361 TTGGTGGTGATGGAAAGTCTATCGAGATCCGTAACTTCCTTGGCGAGAAGAAGGTGAGGA 420
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 TCGGCGGTGACGGAAAGTCTATCGAGATCCGTAACTTCCTTGGCGAGAAGAAGGTGAGGA 467
Query 421 AGGTAGAGATGTTGGATGGTGTAACCATTGTTCGATCTGAGAAGGTCAAGGATGAGATTG 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 468 AGGTAGAGATGTTGGATGGTGTAACCATTGTTCGATCTGAGAAGGTGAAGGATGAGATTG 527
Query 481 TTCTTGATGGTAACGATATCGAGCTTGTTTCAAGGTCATGCGCTCTGATCAACCAGAAAT 540
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 528 TTCTTGACGGTAACGATATCGAGCTTGTTTCAAGGTCGTGCGCTCTGATCAACCAGAAAT 587
Query 541 GTCACGTGAAGAAGAAGGATATCAGGAAGTTCCTTGACGGTATCTATGTTAGCGAGAAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GTCACGTGAAGAAGAAGGATATCAGGAAGTTCCTTGACGGTATCTATGTTAGCGAGAAAA 647
Query 601 GCAAGATCGTAGAGGAAGAATGAATGCTCAT-TTCCTCATCTTAGCTCCTATTTCTTGTC 659
||||||||||||||||||||||||| ||||| |||| | ||||||||| ||||||||||
Sbjct 648 GCAAGATCGTAGAGGAAGAATGAATACTCATATTCCCC-TCTTAGCTCATATTTCTTGTG 706
Query 660 TCTTG-AATGTT---AGTTTCGTTTTATGGACCAAATCTACCGGTGTTGCAAA 708
| ||| |||||| ||||| ||||||||||||||||| ||||||| || |||
Sbjct 707 T-TTGGAATGTTGTTAGTTTTGTTTTATGGACCAAATCCACCGGTGATGTAAA 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5