BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473495
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10095.1 | Symbols: | Protein prenylyltransferase superfami... 1786 0.0
> AT1G10095.1 | Symbols: | Protein prenylyltransferase superfamily
protein | chr1:3297324-3300443 REVERSE LENGTH=1507
Length=1507
Score = 1786 bits (967), Expect = 0.0
Identities = 1243/1374 (90%), Gaps = 28/1374 (2%)
Strand=Plus/Plus
Query 1 AATGAGACAAGGACCATGTTCTGAAGAAGGTTGCTTTACCGTGTTGAAGCTGTTCGAGCA 60
||||| ||||||||||| ||||||||| | |||||||| | ||||||||| |||||||||
Sbjct 90 AATGAAACAAGGACCATCTTCTGAAGATGATTGCTTTAGCTTGTTGAAGCAGTTCGAGCA 149
Query 61 TGTTCTTGAATCTGACCCTCTTATTAATGAAGTAGGTTTTATTCACCCCTCACAGTTCAA 120
||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
Sbjct 150 TGTCCTTGAATCTGACCCTCTTATTGATGAAGTAGGGTTTATTCACCCCTCACAGTTC-A 208
Query 121 CC-TGCTGGATGAAGAAGCAGGTTCCTTCAGTGTCTATCAAAATGAACTCCAGCCTAACA 179
|| |||| ||| |||||||||| | ||| || | |||||| ||||||||||||
Sbjct 209 CCATGCTCGATAAAGAAGCAGG-T--TTC----TC---C--AATGAATTCCAGCCTAACA 256
Query 180 ATGAAACCTCAAGAAAATTCTGGAATCAAGATCACAAATTGGGAATATCAACTGATATAC 239
||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 ATGGAACCTCAAGCAAGTTCTGGAATCAAGATCACAAATTGGGAATATCAACTGATATAC 316
Query 240 TTGTTCAATTATGTAAAGATGCCAAACATGTGTTTCTGCTTGCGTTTGAGGAGTACAAA- 298
|||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 317 TTGTTCAATTATGTAAAGATGCCAAACATGTGTTTCTGCTAGCGCTTCAGGAGTACAAAT 376
Query 299 CGTCATGGAAACGCTTGTAATGAATCTCAAATTGAGAATTTCTCTTGTTCCCCCGGTACT 358
| ||||||||||| ||| |||| ||||| ||| ||||| |||||||||| ||| ||| |
Sbjct 377 C-CCATGGAAACGCATGTGATGAGTCTCAGATTAAGAATATCTCTTGTTCTCCCTGTATT 435
Query 359 CCTGAGATTGAAGTTATGAGGCATAGCCAAGCTGTTTTGCTGTTAAGTTCAGACTTTGGA 418
|| |||| ||| || |||| |||||||||| ||||||||||||| || ||||||||||||
Sbjct 436 CCCGAGAGTGACGTCATGAAGCATAGCCAATCTGTTTTGCTGTTGAGCTCAGACTTTGGA 495
Query 419 ACTGCATGGAATGCTAGAAAGTTGATATTATCAAAAAAGGATCAACTTTCGGCATTCACG 478
||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||
Sbjct 496 ACTGCATGGAATGCTAGGAAGTTGATTTTGTCAAAAAAGGATCACCTTTCGGCATTCAC- 554
Query 479 A-AAGAACTTCGTCTCTCTGAGCTCATTCTTTCAAATTCTCCTAAGAGTGAGTCAACATG 537
| ||||||||||||| |||| |||||||||||||||||| || |||||||||||||||||
Sbjct 555 AGAAGAACTTCGTCTTTCTGGGCTCATTCTTTCAAATTCCCCAAAGAGTGAGTCAACATG 614
Query 538 GAGCCATAGAAGGTGGATAATTAAGATGATTTCTCAGAGATTTTCTACACCACAAGTGAT 597
||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |||
Sbjct 615 GAGCCATAGAAGGTGGATAATTAAGATGATTTCCCAGAGTTTTTCTACACTACAAGAGAT 674
Query 598 TATAACCAAAGAATCTGAGTTAGTGGAATCAATAGGCGAGAGATCAAAGATGAACTATCG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 TATAACCAAAGAATCTGAGTTAGTGGAATCAATAGGCGAGAGATCAAAGATGAACTATCG 734
Query 658 TGCATGGTATCACCGTTGCTGGTTGGTTTCCTACATGGCAATTGAGCAGGTGATACAAGA 717
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 735 TGCATGGTATCACCGTTGCTGGTTGGTTTCTTACATGACAATTGAGCAGGTGATACAAGA 794
Query 718 GTTGAACAAATCTAAAAGGTGGGCCGGGCTTCATGTAGCCGATAGTTCTTGCTTCCATTA 777
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 795 GTTGAACAAATCTAAAAGATGGGCTGGGCTTCATGTAGCCGATAGTTCTTGCTTCCATTA 854
Query 778 TCGTAGACGGTTGATGCTCAAGATTTTGGAGTCACTTTATGTGAAAGGAGGCAATGCTTA 837
||| |||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 855 TCGCAGACGGCTGATGCTCAAGATTCTGGAGTCACTTTATGTGAAAGGAAGCAGCGCTTA 914
Query 838 TGATAAATCTGAGGCACGTAAAATCTGGAAGGAAGAGCTGGATTGGAACAAAGAATTGGT 897
||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 915 TGATAAAACTGAGGCACGCAAAATCTGGAAGGAAGAGCTGGATTGGAATGAAGAATTGGT 974
Query 898 AGAACGTTACGTGGGACGAGAGGCCCTATGGCTTCACCGGCGGTTCCTCTCTCTTAATTG 957
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 975 AGAACGTTACGTGGGACGAGAGGCACTATGGCTTCACCGGCGGTTCCTCTCTCTTAATTG 1034
Query 958 GATAATATATTTCGCTTGCAATGATTTAGATGTTTCACCTGAACCCGGAGAGAGTATCAT 1017
|||||| ||||||||||||||| ||| ||||| |||||||||| ||||||||||||| ||
Sbjct 1035 GATAATGTATTTCGCTTGCAATCATTCAGATGCTTCACCTGAAACCGGAGAGAGTATTAT 1094
Query 1018 TATGAATGAAGAAATTGCCATCTTCATTGATAACGAGATCCATCTTCTAGAATCTTCTAT 1077
||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||
Sbjct 1095 TATGAATGAAGAAATTGCCATCTTCATTGATAATGAGATCCGTCTTCTAGATTCTTCTAT 1154
Query 1078 GATCGTTCCGGATACCAAATTTGAAGATTTCCAAGCTCAAGCATTGCATGCTGGTGTCTA 1137
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1155 GACCGTTCCGGATACCAAATTTGAAGATTTTCAAGCTCAAGCATTGCATGCTGCTGTCTA 1214
Query 1138 CATGCTATGGCTGACAAAGAAAATACCAGAATTGTGGAGAATGGTTGAGGAGAAGCTTGG 1197
|| ||||||||||||||||| || |||| | ||||||||||| | ||||||||||||||
Sbjct 1215 CACGCTATGGCTGACAAAGAGCATTCCAGTACTGTGGAGAATGCTCGAGGAGAAGCTTGG 1274
Query 1198 AACAGAGAAAGTGAAGTGTGTACTGAGCACAATTGCTCAAGAGAGACCCTCACTTTTGCA 1257
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||
Sbjct 1275 AACAGAGAAAGTGAAGTGTGTACTGAACACAATTGCTCAAGAGAGACCCTCGCTTCTGCA 1334
Query 1258 TCATTTGGTGAATGTCTGAAGATTCTTT-TGAGATT--TCTCTTATCACT-TGTG-GGTT 1312
|||||||||||||||||||||| || | | ||| | || | || | | | || |
Sbjct 1335 TCATTTGGTGAATGTCTGAAGACCCTCCATAA-ATTGGTGTCAAACCA-TGTCTCAGGAT 1392
Query 1313 CGGATTCGATTTGGGtttttttttttttttttttttttttttttttCTGTTTTC 1366
| | || || ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1393 CTGTTT-GAATTG--TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTATTTTC 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67268730300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5