BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473496
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33230.1 | Symbols: | TMPIT-like protein | chr1:12046641-12... 2327 0.0
AT4G10430.1 | Symbols: | TMPIT-like protein | chr4:6454881-645... 992 0.0
> AT1G33230.1 | Symbols: | TMPIT-like protein | chr1:12046641-12050066
FORWARD LENGTH=1519
Length=1519
Score = 2327 bits (1260), Expect = 0.0
Identities = 1446/1533 (94%), Gaps = 23/1533 (2%)
Strand=Plus/Plus
Query 1 TTAGATTGCGATGTGGTAGGGACTCGGTGAGGGTTTTGG-A-AGCATGACAAAAGATCCA 58
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 3 TTAGATTGCGATGTGGTAGGGACTCGGTGAGGGTTTTGGAAGAGCATGACAAAAGATCCG 62
Query 59 TGCCATTGAGATCCCTTTATTTACACACCAAATA-CTTCTTCTTCTTCTTCCTCTCGTCT 117
||||||| ||| || |||| |||||||||| | |||||||||||||||||||||||||
Sbjct 63 TGCCATT--GAT--CTCTATTAACACACCAAA-AGCTTCTTCTTCTTCTTCCTCTCGTCT 117
Query 118 CTAAAAATCCTTCCtttttttCTGGGTTTTCTCCAATCTTCATCTCTCATTCGAACCCAC 177
||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||
Sbjct 118 CTAAAAATCCTTCCTTTCTTTCTGGGTTTTCTCGAATCTTCATCTCTCATTCAAACCCAC 177
Query 178 AAGTCCGATCTCATCTCCCGATCCAAAAACCATGGAAGAGGTTGAAGAAGAAGTAAAACG 237
||||||| ||||| ||||||||| |||||||||||||||||||||||||| | |||
Sbjct 178 AAGTCCG-----ATCTCGCGATCCAAACACCATGGAAGAGGTTGAAGAAGAAGTGAGACG 232
Query 238 AATCGTCGAACAAGTTAAAGAGCTTCACGACTCTTCCACATCATTCGTTTCTTCTTCTTC 297
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 233 AATCGTCGAACAAGTTAAAGAGCTTCATGACTCTTCCACATCCTTCGTCTCTTCTTCTTC 292
Query 298 TCAAGAAGAGCTCTCTCTCCGTAACAGAGCCTCCGTCGTTGACTCATCAATCCGTCGTCT 357
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 293 TCAAGAAGAGCTTTCTCTCCGTAACAGAGCCTCCGTCGTTGACTCATCAATCCGCCGTCT 352
Query 358 TCATTCTACTCTTGCCTCCGACAAACATCTCGATCCCAAGCTTTTCGAAAAGCTTGAAGA 417
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 353 TCATTCTACTCTTGCCTCTGACAAACATCTCGATCCCAAGCTTTTCGAAAAGCTAGAAGA 412
Query 418 GGATCTACAACGAGCTAAATGCATGCTTGCAGATGGTGACACTTCATCGTTTCTTCCCTC 477
|||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| ||
Sbjct 413 GGATCTGCAACGAGCTAGATGCATGCTTGCAGATGGAGACACTTCATCGTTTCTTCCATC 472
Query 478 TAAACCTCAAGGACGTTTTGTGAGAATGTTTTTAGGACCTGTGAATGTTCGAGCTTCACG 537
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 473 TAAACCTCAAGGACGTTTTGTGAGAATGTTTTTGGGACCTGTGAATGTTAGAGCTTCACG 532
Query 538 GAAAGATATACAGCTTAAAGTTAAAGAAGAATACAATAGCTACAGAGATAGAACAGCTCT 597
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 533 AAAAGATATACAGCTTAAAGTTAAAGAAGAATATAATAGCTACAGAGATAGGACAGCTCT 592
Query 598 TCTTTTTCTTGTTTTCCCTGCAATACTTTTGACACTAAGATCTTATGTGTGGGATGGATG 657
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 593 TCTTTTTCTTGTTTTCCCTGCAATACTTTTGACACTAAGATCTTATGTTTGGGATGGATG 652
Query 658 TTTGCCTGCATTCCCTGTTCAGCTCTACCAGGCTTGGCTTCTGTTCCTTTATGCTGGTTT 717
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 653 TTTGCCTGCATTCCCTGTTCAGCTCTACCAGGCTTGGCTACTGTTTCTTTATGCTGGTTT 712
Query 718 GGTTATGCGAGAGAACATTTTGAGAGCCAATGGGAGTGATATCCGTTCATGGTGGATTTA 777
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct 713 GGTTATGCGAGAGAACATTTTAAGAGCTAATGGGAGTGATATCCGTTCATGGTGGCTTTA 772
Query 778 TCACCATTATTTTGCCATGGCTATGTCCCTTGTTAGTCTCACTTGGGAAATCAAAGGTCA 837
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 773 TCATCATTATTTTGCAATGGCTATGTCCCTTGTCAGTCTCACTTGGGAAATCAAAGGTCA 832
Query 838 ACCAAACTGTGTTCAGAAGCAGAAAGGAGTGCGTCTTTTCCTCCAATGGGCTATGATGCA 897
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 ACCAAACTGCGTTCAGAAGCAGAAAGGAGTGCGTCTTTTCCTCCAATGGGCTATGATGCA 892
Query 898 AGGTGTTGCGATGCTTCTACAAAATAGATATCAGCGCCAAAGATTATACACTCGTATTGC 957
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 893 AGGTGTCGCGATGCTTCTGCAAAATAGATATCAGCGCCAAAGATTATACACTCGCATTGC 952
Query 958 ACTAGGAAAGGCTAAAAGGATGGACGTCGTATGGGGAGAAACGGCTGGAGTAGATGGGCA 1017
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 ACTTGGAAAGGCTAAAAGGATGGACGTCGTATGGGGAGAAACGGCTGGAGTAGATGGGCA 1012
Query 1018 ACTATTGCTATTATTTCCTATTTTGTTCACTTTACAGGGCTTTGAAGCATACGTGGGACT 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1013 ACTATTGCTATTATTTCCTATTTTGTTCACTTTACAGGGCTTTGAAGCATACGTGGGATT 1072
Query 1078 GCAGTTGCTTAGGACAGTGTTGACGGGTGTAGTCGCTGAATGGCAGGTATTGGTTTGTGG 1137
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1073 CCAGTTGCTTAGGACAGTGTTGATGGGGGTAGTCGCTGAATGGCAGGTATTGGTTTGTGG 1132
Query 1138 TATTCTTCTGGTTGTGATGGCCATTGGAAACTTCATAAACACAGTAGAGACATTGATGGT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1133 CATTCTTCTGGTTGTGATGGCCATTGGAAACTTCATAAACACAGTAGAGACACTAATGGT 1192
Query 1198 GAAGTCGAGATTCAAGGCGAAGATGAAGAGAAGTAAAAGCAGAGCAGAACTT-GATTAAA 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1193 GAAGTCGAGATTCAAGGCGAAGATGAAGAGAAGTAAAAGCAGAGCAGAACTTTGATTAAA 1252
Query 1257 CTTCCTAACTTATATAACTATAGCTTCATAGTTTCAAACTGTGGATCTTTCTCCACATTA 1316
||||||||||||||| |||| | ||| |||||||| |||||||||||||||||| |||||
Sbjct 1253 CTTCCTAACTTATATGACTACACCTTTATAGTTTCCAACTGTGGATCTTTCTCCCCATTA 1312
Query 1317 TTTGCTTTACTTGATAAATTTTGTTTTCTTGGGGCAAAAGTGACCTaaaaatctgaaaaa 1376
||||||| | | |||||||||||||| |||||||||||||| |||||| |||||||||
Sbjct 1313 TTTGCTTCAGTCGATAAATTTTGTTT-CTTGGGGCAAAAGTAACCTAAG--TCTGAAAAA 1369
Query 1377 gaaaaaaaaCAGGGAGTGCCCTTTCTTTGTGTAAATGGAAGTTGGGATTTGATAATTTGA 1436
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1370 -AAAAAAAACAGGGAGTGCCCTTTGTTTGTGTAAATGGAAGTTGGGATTTGATAGTT-GA 1427
Query 1437 TTGATTAAACTGTGTTTTGTAAACTTTTCAACTAACATTTGTTGGGTTTCCAATGATC-G 1495
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 1428 TTGATTAAACTGTGTTTTGTAAACTTTTCAACTAACACTTGTTCGGTTTCCAATGATCAG 1487
Query 1496 AATTCTCA-AAAGATAGTGTTGAAATTAGATTT 1527
| || ||| ||| || |||||||||||||||||
Sbjct 1488 ATTT-TCATAAA-ATGGTGTTGAAATTAGATTT 1518
> AT4G10430.1 | Symbols: | TMPIT-like protein | chr4:6454881-6458089
REVERSE LENGTH=1366
Length=1366
Score = 992 bits (537), Expect = 0.0
Identities = 914/1095 (83%), Gaps = 29/1095 (3%)
Strand=Plus/Plus
Query 181 TCCGATCTCATC-TCCCGATCCAAAAACCATGGAA--GAGGTTGAAGAAGAAGTAAAACG 237
||||||||| || || | || || |||||| || || |||||||||||||| ||||
Sbjct 62 TCCGATCTCGTCTTCGCAAT-CATCAACCAT-CAATGGAAGTTGAAGAAGAAGTTAAACA 119
Query 238 AATCGTCGAACAAGTTAAAGAGCTTCACGACTCTTCCACATCATTCGTTTCTTCTTCTTC 297
|||| | || | || ||||||||||| ||||| || | || ||| | || ||||||||
Sbjct 120 AATCATAGATGAGGTCAAAGAGCTTCATGACTCCGCCGCTTCTTTCATCTCATCTTCTTC 179
Query 298 TCAAGAAGAGCTCTCTCTCCGT-AACAGAGCCTCCGTCGTTGACTCATCAATCCGTCGTC 356
|||| ||||||||||||||||| || | |||||||| |||||| || || ||||||||||
Sbjct 180 TCAACAAGAGCTCTCTCTCCGTCAA-AAAGCCTCCGCCGTTGATTCCTCTATCCGTCGTC 238
Query 357 TTCATTCTACTCTTGCCTCCGACAAACATCTCGATCCCAAGCTTTTCGAAAAGCTTGAAG 416
| || |||||| | | |||| ||||| |||||||||| ||||| ||||||||||||| |
Sbjct 239 TCCACTCTACTATCGTCTCCAACAAAAATCTCGATCCTAAGCTCGTCGAAAAGCTTGAGG 298
Query 417 AGGATCTACAACGAGCTAAATGCATGCTTGCAGATGGTGACACTTCATCGTTTCTTCCC- 475
| ||||| || || |||| ||||||||||| || || || || || || |||| ||||
Sbjct 299 AAGATCTGCATCGTGCTAGATGCATGCTTGTTGACGGAGAAACATCTTCATTTC-TCCCA 357
Query 476 TCTAAACCTCAAGGACGTTTTGTGAGAATGTTTT-TAGGACCTGTGAATGTTCGAGCTTC 534
|| ||||| |||||||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 358 TCCAAACCACAAGGACGCTTTGTGAGAATGTTTTGT-GGACCTGTGAATGTTCGAGCTTT 416
Query 535 ACGGAAAGATATACAGCTTAAAGTTAAAGAAGAATACAATAGCTACAGAGA-TAGAACAG 593
|| |||||| | ||||||||||||||||||||||||||| | |||||||| || || |
Sbjct 417 GCGTAAAGATGTTCAGCTTAAAGTTAAAGAAGAATACAATCGTTACAGAGACAAG-ACTG 475
Query 594 CTCTTCTTTTTCTTGTTTTCCCTGCAATACTTTTGA-CACTAAGATCTTA-TGTGTGGGA 651
|||||||||||||| |||||||||| | |||||| | | || || ||||| | | ||||
Sbjct 476 CTCTTCTTTTTCTTTTTTTCCCTGCCACACTTTTAATC-CTTAGGTCTTATTAT-TGGGG 533
Query 652 TGGATGTTTGCCTGCATTCCCTGTTCAGCTCTACCAGGCTTGGCT-TCTGTTCCTTTATG 710
||||||||||||||| || ||||| |||||||| |||||||||| | |||| || ||||
Sbjct 534 TGGATGTTTGCCTGCGTTTCCTGTCCAGCTCTATGAGGCTTGGCTGT-TGTTTCTCTATG 592
Query 711 CTGGTTTGGTTATGCGAGAGAACATTTTGAGAGCCAATGGGAGTGATATCCGTTCATGGT 770
|||| |||| |||||| ||||| || || ||||| || || || ||||| ||| ||||||
Sbjct 593 CTGGGTTGGCTATGCGTGAGAATATATTAAGAGCTAACGGAAGCGATATTCGTCCATGGT 652
Query 771 GGATTTATCACCATTATTTTGCCATGGCTATGTCCCTTGTTAGTCTCACTTGGGAAATCA 830
|| | ||||| ||||||| ||||||||||||| ||||||| || ||||| ||||||||||
Sbjct 653 GGCTATATCATCATTATTGTGCCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCA 712
Query 831 AAGGTCAACCAAACTGTGTTCAGAAGCAGAAAGGAGTGCGTCTTTTCCTCCAATGGGCTA 890
||||||||||||||||||| ||||| |||| |||||| | ||||||||| ||||||||||
Sbjct 713 AAGGTCAACCAAACTGTGTCCAGAAACAGAGAGGAGTCCATCTTTTCCTACAATGGGCTA 772
Query 891 TGATGCAAGGTGTTGCGATGCTTCTACAAAATAGATATCAGCGCCAAAGATTATACACTC 950
||||||||||||| || |||||| ||||||| |||||||| |||||||||||||||||||
Sbjct 773 TGATGCAAGGTGTCGCCATGCTTTTACAAAACAGATATCAACGCCAAAGATTATACACTC 832
Query 951 GTATTGCACTAGGAAAGGCTAAAAGGATGGACGTCGTATGGGGAGAAACGGCTGGAGTAG 1010
| |||||||||||||||||||| || ||||| || || |||||||||||||||||||| |
Sbjct 833 GCATTGCACTAGGAAAGGCTAAGAGAATGGATGTTGTTTGGGGAGAAACGGCTGGAGTTG 892
Query 1011 ATGGGCAACTATTGCTATTATTTCCTATTTTGTTCACTTTACAGG-GCTTTGAAGCATAC 1069
|||| ||||||| ||| |||| |||||| |||||| |||||||| | ||||||||||||
Sbjct 893 ATGGACAACTATGGCTGTTATGTCCTATACTGTTCATTTTACAGGTG-TTTGAAGCATAC 951
Query 1070 GTGGGACTGCAGTTGCTTAGGACAGT-GTTGACGGGTGTAGTCGCTGAATGGCAGGT-AT 1127
|| ||||||| |||||| || | | || || || || || |||||||||||| ||
Sbjct 952 GTTGGACTGCTGTTGCTAAGAAAAACAGTA-ACTGGAGTTGTTAATGAATGGCAGGTGAT 1010
Query 1128 TGGTTTGTGGTATTCTTCTGGTTGTGATGGCCA-TTGGAAACTTCATAAACACAGTAGAG 1186
||||||||| ||||||||||| |||||||| | |||| ||||||||||| |||||||||
Sbjct 1011 -GGTTTGTGGGATTCTTCTGGTAGTGATGGC-AGTTGGGAACTTCATAAATACAGTAGAG 1068
Query 1187 ACATTGATGGTGAAGTCGAGA-TTCAAGGCGAAGATGAAGAGAAGTAAAAGCAGAGCAGA 1245
||| |||||| ||||| ||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1069 ACACTGATGGCAAAGTCAAGAGTT-AAGGCAAAGATGAAGAGAAGTAAAAGCAGAGCAGA 1127
Query 1246 ACTTGATTAAACTTC 1260
||| |||| |||||
Sbjct 1128 GCTTAATTAGACTTC 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75351018045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5