BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473497
Length=2568
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33240.1 | Symbols: AT-GTL1, AT-GTL2, GTL1 | GT-2-like 1 | c... 3703 0.0
AT1G76878.1 | Symbols: | other RNA | chr1:28866404-28867969 RE... 172 1e-41
AT1G76880.1 | Symbols: | Duplicated homeodomain-like superfami... 172 1e-41
> AT1G33240.1 | Symbols: AT-GTL1, AT-GTL2, GTL1 | GT-2-like 1 |
chr1:12051471-12054546 REVERSE LENGTH=2624
Length=2624
Score = 3703 bits (2005), Expect = 0.0
Identities = 2374/2536 (94%), Gaps = 90/2536 (4%)
Strand=Plus/Plus
Query 84 TCATCAATGGTTTTATGAGA--T-TATC-AAAAACATTGAGCTagagagaaagagagaga 139
|||||||||||||||||||| | |||| |||||||||||| ||| | ||||| |||
Sbjct 127 TCATCAATGGTTTTATGAGATTTATATCAAAAAACATTGAG---GAGCTAGAGAGAAAGA 183
Query 140 gagtgtgtgtgtgtTGAAAAAGATTGAAA-ATCATCAAGATTGATGGAGCAAGGAGGTGG 198
||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 184 GAGAGTGTGTGTGTAGAAAAAGATTGAAACATCATCAAGATTGATGGAGCAAGGA---GG 240
Query 199 AGGTGGTGGTGGTAATGAAGTGGTGGAAGAAGCTTCACCTATTAGTTCAAGACCTCCTGC 258
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 241 AGGTGGTGGTGGTAATGAAGTTGTGGAGGAAGCTTCACCTATTAGTTCAAGACCTCCTGC 300
Query 259 TAACAACTTAGAAGAGCTTATGAGATTCTCAGCCGCCGCGGATGACGGTgg---agga-- 313
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 TAACAACTTAGAAGAGCTTATGAGATTCTCAGCCGCCGCGGATGACGGTGGATTAGGAGG 360
Query 314 -gga---ggaggaggaggaggaggaAGTGCTTCTTCTTCATCGGGAAATCGATGGCCGAG 369
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGGAGGTGGAGGAGGAGGAGGAGGAAGTGCTTCTTCTTCATCGGGAAATCGATGGCCGAG 420
Query 370 AGAAGAAACACTAGCTCTTCTTCGGATCCGATCCGATATGGATTCGACTTTTCGTGATGC 429
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 AGAAGAAACTTTAGCTCTTCTTCGGATCCGATCCGATATGGATTCTACTTTTCGTGATGC 480
Query 430 TACTCTCAAAGCTCCTCTTTGGGAACATGTTTCCAGAAAGCTATTGGAGTTAGGTTACAA 489
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 TACTCTCAAAGCTCCTCTTTGGGAACATGTTTCCAGGAAGCTATTGGAGTTAGGTTACAA 540
Query 490 ACGAAGTTCAAAGAAATGCAAAGAGAAATTCGAAAACGTTCAGAAATATTACAAACGCAC 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 ACGAAGTTCAAAGAAATGCAAAGAGAAATTCGAAAACGTTCAGAAATATTACAAACGTAC 600
Query 550 TAAAGAAACTCGTGGTGGTCGTCATGATGGTAAAGCTTATAAGTTCTTCTCTCAGCTTGA 609
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 601 TAAAGAAACTCGCGGTGGTCGTCATGATGGTAAAGCTTACAAGTTCTTCTCTCAGCTTGA 660
Query 610 AGCTCTCAACACTACTCCTCCTTCATCTTCCCTCGACGTCACTCCTCTCTCCGTCGCCAA 669
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 661 AGCTCTCAACACTACTCCTCCTTCATCTTCCCTCGACGTTACTCCTCTCTCCGTCGCTAA 720
Query 670 TCCCATTCTCATGCCTACTTCTTCTTCTTCTCCATTTCCCGTCTTCCCTCAACCGCAACC 729
|||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 721 TCCCATTCTCATGCCTTCTTCTTCTTCTTCTCCATTTCCCGTATTCTCTCAACCGCAACC 780
Query 730 GC-AA--C---CGCAACCGCTTCAAACGCATAATGTCTCTTTTACTCCTACTCCACCACC 783
|| || | ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCAAACGCAAACGCAACCGCCTCAAACGCATAATGTCTCTTTTACTCCTACTCCACCACC 840
Query 784 TCCTCCACTTCCTTCAATGGGTCCGACCTTTCCCGGTGTTACCTTCTCGTCTCATAGCTC 843
|| ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||
Sbjct 841 TCTTCCACTTCCTTCAATGGGTCCGATATTTACCGGTGTTACTTTCTCGTCTCATAGCTC 900
Query 844 ATCGACGGCTTCAGGAATGGGGTCTGATGATGATGACGACGAGATGGACGTGGATCAAGC 903
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 901 ATCGACGGCTTCAGGAATGGGGTCTGATGATGATGACGACGATATGGACGTTGATCAGGC 960
Query 904 TAACATTGCGGGGTCTACTAGCCGAAAACGCAAACGTGGAAACCGCGGTGGAGGCGGTAA 963
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TAACATTGCGGGTTCTAGTAGCCGAAAACGCAAACGTGGAAACCGCGGTGGAGGCGGTAA 1020
Query 964 AATGATGGAATTATTTGAAGGTTTGGTGAGACAAGTAATGCAAAAGCAAGCGGCTATGCA 1023
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AATGATGGAATTGTTTGAAGGTTTGGTGAGACAAGTAATGCAAAAGCAAGCGGCTATGCA 1080
Query 1024 ACGGAGTTTCTTGGAAGCTCTTGAGAAGAGAGAGCAAGAACGTCTTGATCGAGAAGAAGC 1083
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1081 AAGGAGTTTCTTGGAAGCTCTTGAGAAGAGAGAGCAAGAACGTCTTGATCGTGAAGAAGC 1140
Query 1084 TTGGAAACGTCAAGAAATGGCTCGGTTAGCTCGAGAACACGAGGTCATGTCTCAAGAACG 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTGGAAACGTCAAGAAATGGCTCGGTTAGCTCGAGAACACGAGGTCATGTCTCAAGAACG 1200
Query 1144 AGCCGCCTCTGCTTCTCGTGACGCCGCAATCATTTCATTGATTCAGAAAATTACTGGCCA 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AGCCGCCTCTGCTTCTCGTGACGCCGCAATCATTTCATTGATTCAGAAAATTACTGGCCA 1260
Query 1204 CACCATTCAGTTACCTCCTTCTTTATCATCACAACCGCCTCAACCGCCTCCTCCACCGTA 1263
||||||||||||||||||||||| ||||| |||||||||||| ||||||
Sbjct 1261 TACCATTCAGTTACCTCCTTCTTTGTCATC---------TCAACCGCCTCC---ACCGTA 1308
Query 1264 TCAACCGCCACCCGCGGTTGCTAAACGTGTGGCAGAACCACCATTATCAACAGCTCAATC 1323
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1309 TCAACCGCCACCCGCGGTCACTAAACGTGTGGCGGAACCACCATTATCAACAGCTCAATC 1368
Query 1324 TCAATTACAACAACCAATAATGGCGATTCCACAACAACAAATTCTtcctcctcctcctcc 1383
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 TCAATCACAACAACCAATAATGGCGATTCCACAACAACAAATTCTTCCTCCTCCTCCTCC 1428
Query 1384 tcctcctcctcATCTTCCTCATCAACCAGAACAGAaacaacaacaacaacaacaaccgca 1443
| ||| |||||| | | |||||||||||||||||||||||||||||||| || | |
Sbjct 1429 TTCTCATCCTCA-CG-C-TCATCAACCAGAACAGAAACAACAACAACAAC--CA-C---A 1479
Query 1444 acaacaaGAGATGGTCATGAGCTCGGAACAATCATCATTACCATCATCATCAAGATGGCC 1503
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 ACAA---GAGATGGTCATGAGCTCGGAACAATCATCATTACCATCATCATCAAGATGGCC 1536
Query 1504 AAAGGCGGAGATTCTAGCGCTTATAAACCTAAGAAGCGGAATGGAACCAAGGTACCAAGA 1563
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1537 AAAGGCAGAGATTCTAGCGCTTATAAACCTGAGAAGTGGAATGGAACCAAGGTACCAAGA 1596
Query 1564 TAATGTCCCTAAAGGACTTCTATGGGAAGAGATCTCAACGTCAATGAAGAGAATGGGATA 1623
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1597 TAATGTACCTAAAGGACTTCTATGGGAAGAGATCTCAACTTCAATGAAGAGAATGGGATA 1656
Query 1624 CAACAGAAACGCTAAGAGATGTAAAGAGAAATGGGAAAACATAAACAAATACTACAAGAA 1683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 CAACAGAAACGCTAAGAGATGTAAAGAGAAATGGGAAAACATAAACAAATACTACAAGAA 1716
Query 1684 AGTTAAAGAAAGCAACAAGAAACGTCCTCAAGATGCTAAGACTTGTCCTTACTTTCACCG 1743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 AGTTAAAGAAAGCAACAAGAAACGTCCTCAAGATGCTAAGACTTGTCCTTACTTTCACCG 1776
Query 1744 TCTTGATCTTCTTTACCGCAACAAAGTACTCGGTAGTGGTGGCGGTTCTAGCACTTCTGG 1803
|| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1777 CCTCGATCTTCTTTACCGCAACAAAGTACTCGGTAGTGGCGGTGGTTCTAGCACTTCTGG 1836
Query 1804 TCTACCTCAAGACCAAAAGCAGAGTCCAGTCCCTGCGATGAAACTGCCACAAGAAGGACT 1863
|||||||||||||||||| |||||||| ||| |||||||||||| |||||||||||||||
Sbjct 1837 TCTACCTCAAGACCAAAAACAGAGTCCGGTCACTGCGATGAAACCGCCACAAGAAGGACT 1896
Query 1864 TGTTAATGTTCAACAACCTCATGGGTCAGCTTCAAGTGAGGAAGAGGAGCCTATAGAGGA 1923
|||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1897 TGTTAATGTTCAACAAACTCATGGGTCAGCTTCAACTGAGGAAGAAGAGCCTATAGAGGA 1956
Query 1924 AAGTCCACAAGGAACAGAAAAGCCAGAAGACCTTGTGATGAGAGAGCTGAT--------- 1974
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1957 AAGTCCACAAGGAACAGAAAAGCCAGAAGACCTTGTGATGAGAGAGCTGATTCAACAACA 2016
Query 1975 ---GCAAC-A-A-CAACAAGAATCAATGATAGGTGAGTATGAAAAGATTGAAGAGTCTCA 2028
||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2017 ACAGCAACTACAACAACAAGAATCAATGATAGGTGAGTATGAAAAGATTGAAGAGTCTCA 2076
Query 2029 CAATTATAATAACATGGAGGAAGAGGAAGA---GGAGATGGATGTAG-AAGAACTAGACG 2084
|||||||||||||||||||||||||||||| ||| ||||||| || ||||||||||||
Sbjct 2077 CAATTATAATAACATGGAGGAAGAGGAAGATCAGGAAATGGATG-AGGAAGAACTAGACG 2135
Query 2085 AGGATGAGAAATCCGCGGCTTTCGAGATCGCGTTTCAAAGCCCTGCAAACAGAGGAGGCA 2144
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2136 AGGATGAGAAGTCCGCGGCTTTCGAGATTGCGTTTCAAAGCCCTGCAAACAGAGGAGGCA 2195
Query 2145 ATGGCCACACGGAACCACCTTTCTTGACAATGGTTCAGTAAAAAC----TCATTGATTCA 2200
||||||| ||||||||||||||||||||||||||||||||||| | |||||| ||||
Sbjct 2196 ATGGCCATACGGAACCACCTTTCTTGACAATGGTTCAGTAAAATCAGAATCATTGTTTCA 2255
Query 2201 AGAAAATGTACTTATGTGTGCATAGTTT-CTaaacaaa-cacccaaaaacacaaaacaca 2258
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 2256 AGAAAATGTACTTATGTGTGCATAGTTTTCTAAACAAAACACCCAAAAACACAAAACACA 2315
Query 2259 --cacacacacacacacaTCTGACACCACAAACTGAAAAATCAAGATCATCATCGAtctt 2316
|||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 2316 AACACACACACACACACATCTGACACCACAAACTGAAATATCAAGGTC-TCATCGATCTT 2374
Query 2317 cgatttttcagtgaatacaattctttttcacattctttcccttttgttcttttatttctc 2376
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2375 CGATTTTTCAGTGAATACAATTCTTTTTCACATTCTTTCCCTTTTGTTCTTTTCTTTCTC 2434
Query 2377 actctctcttgtttgtttcttcttctgttcattgttttcttcttcAACACCACCCACATG 2436
||| |||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||
Sbjct 2435 ACTGTCTCTTGTTTGTTTCTTCTT--GTTCATTGTTTTCTTCTTCCA-ACC-CCCACATG 2490
Query 2437 AACAAAAA-CTCTAGCTAAA-GGTCTTTTAGATTATTT-GGAGTTGTAATT-CATCAGCA 2492
|||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||||
Sbjct 2491 AACAAAAAACTCTAGCTAAAAGGTCTTTTAGATTATTTTGGAGTTGTAATTTCATCAGCA 2550
Query 2493 AGTCTCACACttttttctttttttCCTTAAAAACATTTGTTGATTGGTTAATTGGGGAAT 2552
|||||||||||||||| ||||| || |||||| |||||||||||||||||||||||||||
Sbjct 2551 AGTCTCACACTTTTTT-TTTTTCTC-TTAAAA-CATTTGTTGATTGGTTAATTGGGGAAT 2607
Query 2553 AAAGAGTCtttttttt 2568
||||||||||| ||||
Sbjct 2608 AAAGAGTCTTTATTTT 2623
Score = 100 bits (54), Expect = 6e-20
Identities = 56/57 (98%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 1 ATTCTCTTTCTCTCTATCTATCATCATCATCCTCGTAATCCTCCCCTTTCTCCTTCA 57
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATTCTCTTTCTCTCTATCTATCATCATCATCCTCGTAATCCTCTCCTTTCTCCTTCA 57
> AT1G76878.1 | Symbols: | other RNA | chr1:28866404-28867969
REVERSE LENGTH=1566
Length=1566
Score = 172 bits (93), Expect = 1e-41
Identities = 147/172 (85%), Gaps = 7/172 (4%)
Strand=Plus/Minus
Query 1586 TGGGAAGAGATCTCAACGTCAATGAAG-AGAATGGGATACAACAGAAACGCTAAGAGATG 1644
||||||||||| ||| || |||| || || | |||| |||||| ||| | ||||||||
Sbjct 539 TGGGAAGAGATATCAGCGGGAATG-AGAAGGTTAGGATTCAACAGGAACTCAAAGAGATG 481
Query 1645 TAAAGAGAAATGGGAAAACATAAACAAATACTACAAGAAAGTTAAAGAAAGCAACAAGAA 1704
||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||
Sbjct 480 CAAAGAGAAATGGGAAAACATAAACAAATACTTCAAGAAAGTCAAAGAGAGCAACAAGAA 421
Query 1705 ACGTCCTC-AAGATGCTAAGACTTGTCCTTACTTTCACC-GTCTTGAT-CTT 1753
|||||| | ||||| | |||||||| ||||||||||||| | |||||| |||
Sbjct 420 ACGTCC-CGAAGATTCCAAGACTTGCCCTTACTTTCACCAG-CTTGATGCTT 371
> AT1G76880.1 | Symbols: | Duplicated homeodomain-like superfamily
protein | chr1:28865500-28868225 FORWARD LENGTH=2200
Length=2200
Score = 172 bits (93), Expect = 1e-41
Identities = 147/172 (85%), Gaps = 7/172 (4%)
Strand=Plus/Plus
Query 1586 TGGGAAGAGATCTCAACGTCAATGAAG-AGAATGGGATACAACAGAAACGCTAAGAGATG 1644
||||||||||| ||| || |||| || || | |||| |||||| ||| | ||||||||
Sbjct 1406 TGGGAAGAGATATCAGCGGGAATG-AGAAGGTTAGGATTCAACAGGAACTCAAAGAGATG 1464
Query 1645 TAAAGAGAAATGGGAAAACATAAACAAATACTACAAGAAAGTTAAAGAAAGCAACAAGAA 1704
||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||
Sbjct 1465 CAAAGAGAAATGGGAAAACATAAACAAATACTTCAAGAAAGTCAAAGAGAGCAACAAGAA 1524
Query 1705 ACGTCCTC-AAGATGCTAAGACTTGTCCTTACTTTCACC-GTCTTGAT-CTT 1753
|||||| | ||||| | |||||||| ||||||||||||| | |||||| |||
Sbjct 1525 ACGTCC-CGAAGATTCCAAGACTTGCCCTTACTTTCACCAG-CTTGATGCTT 1574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127474202163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5