BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473508
Length=2447
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33360.1 | Symbols: | ATP-dependent Clp protease | chr1:120... 3483 0.0
> AT1G33360.1 | Symbols: | ATP-dependent Clp protease | chr1:12091877-12096025
FORWARD LENGTH=2441
Length=2441
Score = 3483 bits (1886), Expect = 0.0
Identities = 2295/2481 (93%), Gaps = 74/2481 (3%)
Strand=Plus/Plus
Query 1 CTTCACTTTCTCCGGTTTTATCG-TT-TC-TCTTCTTCTCCAAATTGATGGCTTTTTAAG 57
|||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||
Sbjct 1 CTTCACTTTCTCCGTTTTTATCGTTTCTCTTCTTCTTCTCCAAATTGATGGCTTTTTAAG 60
Query 58 GTTTCCTTACTCGATCTAATCTAACCTAACGCTCATTCATTAA-TTTCCTTCAGACAGAT 116
|||||| |||||||||||||||||||||||||| |||||||| ||| |||||||||||
Sbjct 61 GTTTCCCCACTCGATCTAATCTAACCTAACGCTCCTTCATTAACTTT-CTTCAGACAGA- 118
Query 117 TCTTCCAATAACGTGt-atatatatata-AAAGGCAGAGTCATTGATTCCGATCTTAAGT 174
|| ||||||||||| ||||| | | | | || | | |||||||||||||||| ||||
Sbjct 119 --TTACAATAACGTGTAATATACA-AGACACAGAAACA-TCATTGATTCCGATCTCAAGT 174
Query 175 TTTCTATTTTCTCTATGTTACACATACAAATCTTCGTTTTTTGTTTTCA-AAATC---AA 230
||| | |||| | || || || ||||| | | | | | || | ||| |
Sbjct 175 TTTGTCTTTT-T-GAT-TT-CATATACACAGATACATAGATAACAAACACACATCTTTGA 230
Query 231 TCAAATGTCTGGAATTTGGAGATGGAGGAGTCTAAAGTCTTTAGCTTTACATGCTCGTTC 290
||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||||||||
Sbjct 231 TCAAATGTCTGGACTTTGGAGATTGAGGAATCTAAAGTCTCTAGCTTTACATGCTCGTTC 290
Query 291 GATTTCACCTGTTCCCAATCTTTATTCTTTGGAATTGGGTTCATCG-CCTCGCCGTCGTA 349
||||||||||||| |||||||||||||| ||||||| || |||| | ||||| |||||||
Sbjct 291 GATTTCACCTGTTTCCAATCTTTATTCTCTGGAATTAGGATCAT-GCCCTCGTCGTCGTA 349
Query 350 TTCAAGAACGATTCAAATCGGAACAAGGCGGCGGAGGAGGAGGAGGAGATGATTTTCCGG 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TTCAAGAACGATTCAAATCGGAACAAGGCGGCGGAGGAGGAGGAGGAGATGATTTTCCGG 409
Query 410 TACCTGTGAGTCGTCGGAAGTTAAGAGCGGAGCCGAATTGTCCTCGTTGCTCAAAACAAA 469
| || |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 410 TTCCGGTGACTCGTCGGAAGTTAAGAGCAGAGCCGAATTGTCCTCGTTGCTCAAAGCAAA 469
Query 470 TGGATCTTCTCTTCTCTAATCGTCAATTCCCATCTTCTAATCTTCTTCAACGTCCTGATG 529
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 470 TGGATCTTCTCTTCTCAAATCGTCAATTTCCATCTTCTAATCTTCTTCAACGTCCTGATG 529
Query 530 ATTCAGATTCCTCCGGCGCCGGAGATAAAACCAATTTCCAGTCTGTGAATTTCTGTCCGG 589
|||| ||||||||||| |||||||||||||| || ||||||||||| ||||||||||||
Sbjct 530 ATTCTGATTCCTCCGGTGCCGGAGATAAAACGAACTTCCAGTCTGTTAATTTCTGTCCGA 589
Query 590 CTTGTAAAACAGCTTATGGATTCAACCCTCGTGGTGTCTCTCCTCTTCAAGGAACATTCA 649
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 590 CTTGTAAAACTGCTTATGGATTCAACCCTCGTGGTGTCTCTCCTCTTCAAGGGACATTCA 649
Query 650 TTGAGATCGGTCGTGTTCAATCT-------C--C-A--ACCAATGCTGCTACTTCCAAAT 697
||||||||||||||||||||||| | | | ||||||||| ||||||||||||
Sbjct 650 TTGAGATCGGTCGTGTTCAATCTCCAACCACTACTACCACCAATGCTACTACTTCCAAAT 709
Query 698 CTACAAGG--A-AACAACAACATTCAAAGGATCTAAATCAAGGATTCAATTACAGAAACA 754
| || ||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 710 CCACCAGGAAACAACAACAACATTCAAAGGATCCAAATCAAGGATTCAATTACAGGAACA 769
Query 755 AGCTTAGATCTTCCTTCTGGGATACACTTAGATCTTATGGTGCTGAGCCACCTGAGGATT 814
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 770 AGCTTAGATCTTCCTTTTGGGATACACTTAGATCTTACGGTGCTGAGCCACCTGAGGATT 829
Query 815 GGTctcctcctcctcctcctcctcctcctcctcctccttctcatccttctttgaactctt 874
|| | |||||||||||||| | | || | | ||||||||||||
Sbjct 830 GG-----------------T-CTCCTCCTCCTCCT-CAT-TC-T-C--CTTTGAACTCTT 865
Query 875 ctcctcctACTACCATTCCTGTGAATGCTTCTCCTAGTACCGTGGAGACTACTTCTCCTT 934
||||||||| ||||||||||||||| |||||||||||| |||| | || |||||||||||
Sbjct 866 CTCCTCCTAATACCATTCCTGTGAACGCTTCTCCTAGTGCCGT-G-GA-TACTTCTCCTT 922
Query 935 TACCTGATGCAGCTAATGACGTTAGTCGATGGGGTGGAGCTAGTCTTGGCAGAGACTTTC 994
|||||||||||| |||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 923 TACCTGATGCAGTTAATGACGTTAGTCGATGGGGTGGTGCTGGCCTTGGCAGAGACTTTC 982
Query 995 CTACTCCTAAGGAGATTTGTAAATGGCTTGACAAATTCGTTATTGGTCAAACCCGTGCTA 1054
||||||| |||||||||||||||||||||||||| ||||| ||||| |||| ||| ||||
Sbjct 983 CTACTCCAAAGGAGATTTGTAAATGGCTTGACAAGTTCGTCATTGGCCAAAGCCGGGCTA 1042
Query 1055 AAAAGGTGCTCTCTGTCGCTGTGTATAACCATTACAAGAGAATTTATCATACCTCTATGA 1114
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1043 AAAAGGTGCTCTCTGTCGCTGTGTATAATCATTACAAGAGAATTTATCATACCTCTATGA 1102
Query 1115 AGAAAGGGTCAGCTGCACAACCAATTGATGATGACGATAATGTAGAATTAGATAAGAGCA 1174
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 AGAAAGGGTCAGCAGCACAACCAATTGATGATGACGATAATGTAGAATTAGATAAGAGCA 1162
Query 1175 ATGTCCTCTTGATGGGGCCTACTGGCTCTGGGAAGACATTACTCGCAAAGACTTTAGCTC 1234
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1163 ATGTTCTCTTGATGGGGCCTACTGGCTCTGGGAAGACATTACTCGCAAAGACTTTGGCGA 1222
Query 1235 GGCTTGTAAATGTTCCTTTTGTCATTGCTGATGCAACTACACTGACTCAGGCTGGTTATG 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 GGCTTGTAAATGTTCCTTTTGTCATTGCTGATGCAACTACACTGACTCAGGCTGGTTATG 1282
Query 1295 TTGGTGATGATGTTGAATCAATCCTTCATAAGCTACTAACGGTCGCTGAGTTTAACGTGC 1354
| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1283 TGGGTGACGATGTTGAATCAATCCTTCATAAGCTACTAACGGTCGCTGAGTTCAACGTGC 1342
Query 1355 AAGCAGCACAACAGGGAATAGTCTACATTGATGAAGTTGATAAGATAACGAAGAAGGCTG 1414
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1343 AAGCAGCACAACAGGGAATAGTCTATATTGATGAAGTTGATAAGATAACTAAGAAGGCTG 1402
Query 1415 AGAGTTTAAACATTAGCCGGGATGTTTCTGGGGAAGGTGTTCAACAAGCGCTTTTGAAAT 1474
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1403 AGAGTTTAAACATTAGCCGGGATGTTTCTGGGGAAGGTGTTCAACAGGCACTTTTGAAAT 1462
Query 1475 TACTGGAAGGCACTATCGTAAATGTTCCAGGGAAAGGTGCAAGGAAGCATCCGCGGGGTG 1534
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1463 TACTGGAAGGCACTATTGTAAATGTTCCAGGGAAAGGTGCAAGAAAGCATCCGCGGGGTG 1522
Query 1535 ACCATATACAGATAGACACAAAAGATATCCTCTTTATCTGTGGAGGAGCATTTGTTGACC 1594
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1523 ACCATATACAGATAGACACAAAAGATATCCTATTTATCTGTGGAGGAGCATTTGTTGACC 1582
Query 1595 TTGAGAAGACCATTGTGGATAGACGACAAGACTCATCAATTGGTTTTGGAGCTCCTGTTC 1654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 TTGAGAAGACCATTGTGGATAGACGACAAGACTCATCAATTGGTTTTGGAGCTCCTGTTC 1642
Query 1655 GTGCCAACATGGCTACCAGTGGAGTGACAAGTGGTGCAATAACTTCATCTTTGCTAGAAT 1714
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1643 GTGCCAACATGGCTACCAGTGGAGTGACCAGTGGTGCAATAACTTCATCTTTGCTAGAAT 1702
Query 1715 CGGTTGAGAGTGCCGATCTGACAGCATATGGTCTTATACCAGAGTTTGTAGGACGCTTTC 1774
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1703 CGGTTGAGAGTGCCGATCTGACAGCATATGGCCTTATACCGGAGTTTGTAGGACGCTTTC 1762
Query 1775 CCATATTAGTTAGTTTGTCAGCTCTGACAGAGGAGCAGCTCATTCGGGTGCTTGTAGAAC 1834
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1763 CCATATTAGTTAGTTTGTCAGCTCTGACAGAGGACCAGCTCATTCGGGTGCTTGTAGAAC 1822
Query 1835 CCAAAAATGCTCTTGGGAAACAGTACAAGAAACTATTTAGCATGAACAACGTGAAA-CTG 1893
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1823 CCAAAAATGCTCTTGGGAAACAGTACAAGAAACTATTTAGCATGAACAACGT-AAAGCTG 1881
Query 1894 CATTTTACTGAGAAAGCGCTGGAGATAATATCCAAGCAAGCAATGGTGAAGAATACAGGT 1953
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1882 CATTTTACTGAGAAAGCGCTGGAGATAATATCCAAGCAAGCAATGGTGAAAAATACAGGT 1941
Query 1954 GCGAGGGGACTAAGAGCCTTACTTGAAAGCATTCTTACCGAAGCCATGTTTGAGATTCCA 2013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1942 GCGAGGGGACTAAGAGCCTTACTTGAAAGCATTCTTACCGAAGCCATGTTTGAGATTCCA 2001
Query 2014 GATGATAAAAAGGGAGATGAAAGAATCGACGCGGTTATAGTAGATGAGGAATCAACAAGC 2073
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2002 GATGATAAAAAGGGAGATGAAAGAATCGATGCGGTTATAGTAGATGAGGAATCAACAAGC 2061
Query 2074 TCAGAAGCTTCTCGTGGATGCACCGCAAAAATACTTAGAGGAGACGGGGCTTTTGAGCGT 2133
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 2062 TCAGAAGCGTCTCGTGGATGCACAGCAAAAATACTTAGAGGAGACGGTGCTTTCGAGCGT 2121
Query 2134 TACCTCAGCGAGAACAAGTCGAAAGATGCTACAGAACCGATGGTTGACGAAAGAGTAGGC 2193
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2122 TACCTCAGCGAGAACAAGTCGAAAGATGCTACAGAACCAATGGTTGACGAAAGAGTAGGC 2181
Query 2194 TCGGCGAGAGCAATGAGATTGTAAAGAGAATGAGAAAAGAAGGGTCTTAACATGAAGAGt 2253
||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 2182 TCGGCGAAAGCAATGAGATTGTAAAGAGAATGAGAGAAGAAGGGTTTTAACATGAAGAGT 2241
Query 2254 ttttttttGATTATTTGTAAAGAACAATAGCATTCATAAAAGTGCAAGAGGAATT-ATCC 2312
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2242 TTTTTTTTTATTATTTGTAAAGAACGATAGCATTCATAAAAGTGCAAGAGGAATTTATCC 2301
Query 2313 ACTTTGTACAATAAATTGTTAGCTTACAGATTCGAAAGTTGAATTGTTTGTTACATAGAA 2372
||| ||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 2302 ACTCTGTACAATAAAATGTTAGCTTACAGATTCGAAAGCTGAATTGTT-GTTACATAGAA 2360
Query 2373 AGAAA-GAATAGGATCG-TGTAAAAACAACATTT--GTAACTCTCTCTGTTTCAAAATAA 2428
||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 2361 AGAAAAGAATAGGATCGGTGTAAAAACAACATTTTTGTAACTCTCTCTGTTTCAAAATAA 2420
Query 2429 CAA--GTGTTATTAGTTTGTC 2447
||| ||||||||||||||||
Sbjct 2421 CAAAAGTGTTATTAGTTTGTC 2441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121535519445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5