BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473510
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33340.1 | Symbols: | ENTH/ANTH/VHS superfamily protein | c... 1783 0.0
> AT1G33340.1 | Symbols: | ENTH/ANTH/VHS superfamily protein |
chr1:12087580-12088958 FORWARD LENGTH=1379
Length=1379
Score = 1783 bits (965), Expect = 0.0
Identities = 1145/1229 (93%), Gaps = 24/1229 (2%)
Strand=Plus/Plus
Query 1 ATAAGATTTCCAACAGCCAATAGTGTCA--TTTAGTCTGTAAATATCAATGAGGCTTGAT 58
||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1 ATAAGATTTCCAACATCCAATAGTGTCATTTTTAGTCTGTAGATATCAATGAGGCTTGAT 60
Query 59 TTATCTGCCAAGCTTCGGCAAGTTCTTGGCCTCGCCAAAGACCATGCATCTATTGGCAGA 118
|||||||||||| |||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 61 TTATCTGCCAAGTTTCGGCAAGTTCTTGGTCTTGCCAAAGATCATGCATCTATTGGCAGA 120
Query 119 GCTATTGTACAAAATTACAATGAAAAAGCCTTTTTTGACATTGAAGTGGCAGTGGTTCGA 178
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTATTGTACAAAACTACAATGAAAAAGCCTTTTTTGACATTGAAGTGGCAGTGGTTCGA 180
Query 179 GCCACTAGCCATGATGATTGTCCTGTTGATGACAAAACCATGCACGAGATACTCTTTCTT 238
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 181 GCCACTAGCCATGATGATTGTCCTGTTGATGATAAAACCATGCACGAGATACTCTTCCTT 240
Query 239 GTCTCTAACACTCCGGGAACGATTCCTTTTCTTGCTGAACAGATCTCACGCCGTCTAGCC 298
||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 GTCTCTAACACACCGGGATCGATTCCTTTTCTTGCTGAACAGATCTCTCGCCGTCTAGCC 300
Query 299 AAGACAAGAGATTGCTTAGTAGCGGGTAAAACTCTGTTACTCTTTCACCGTCTCTTACGT 358
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 301 AAGACAAGAGATTGCTTAGTCGCGGGTAAAACACTGTTACTCTTTCACCGTCTCTTGCGT 360
Query 359 GGTAGCAGTCGCAGTATCGAGCAGCAACTGCATATTGCACACACCTCTGGTCATCTCCAA 418
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||
Sbjct 361 GGTAGCAGTCGCAGTATCGAGCAGCAATTGCATATTGCACACACATCTGGTCATCTTCAA 420
Query 419 ATAGGTTGCTGCTGGTTCATGATGAGCCCGGATCCTCCG-TCCTTTGTTTTTCTGCAGAA 477
|||||||||| ||||||||||||||||| |||| || || ||||||||||||||||||||
Sbjct 421 ATAGGTTGCTCCTGGTTCATGATGAGCCTGGATTCT-CGATCCTTTGTTTTTCTGCAGAA 479
Query 478 CTATGTAGCTTATCTCCAAGAAAGAGTTGGATGGATCATCAACCAAGCTGGTAAGCTTGA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 CTATGTAGCTTATCTCCAAGAAAGAGTTGGATGGATCATCAACCAAGCTGGTAAGCTCGA 539
Query 538 ACCTGTAATGTCTGGTGGTACAAAGTTTAGCCGTTACAAAGAGAAATCCATGGATCTGGT 597
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACCCGTAATGTCTGGTGGTACAAAGTTTAGCCGTTACAAAGAGAAATCCATGGATCTGGT 599
Query 598 GTTCCACATCTTACCAAAGTGCCAAGAGTTCATTGCACAGGTGTTGAAGTGTTCACCGGT 657
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 600 GTTCCACATCTTACCAAAGTGTCAAGAGTTTATTGCACAGGTGTTGAAGTGTTCACCAGT 659
Query 658 TGATGCCTGGCCTATCGATAATCTGGTTCAAGCAGCTACCGGAAACATCTTGAAAGAGAG 717
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 660 TGATGCCTGGCCTATCGATAATCTGGTTCAGGCAGCTACGGGCAACATCTTGAAAGAGAG 719
Query 718 TTTCCAAGTCTACATGACGTATTCCGATGGGAT-AGCCGCGCTGGTTAGCATGCTTTTTG 776
||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 720 TTTCCAAGTCTACATGACGTATTCCGATGGGATGA-CCGCGCTGGTTAGCATGCTCTTTG 778
Query 777 ATCTTTCACGACCCGCAAGAGATTTGGCTTGCGGAATGTTGAGAAAAGCTTCTCAACAGA 836
|||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 ATCTTTCAAGACCCGCGAGAGATTTAGCTTGCGGAATGTTGAGAAAAGCTTCTCAACAGA 838
Query 837 TTCAAGATCTCCGCATCCTGTATGAAAAGTGTAGAGGATTTGCCGGTATGAAGAGCTTGG 896
|||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||||
Sbjct 839 TTCAAGATCTTCGCATCCTGTATGACAAGTGTAGAGGATTCGCCGGGATGAAAAGCTTGG 898
Query 897 ATTACCCATCTGTGCAAGCCATTACCATGGATCATATAGTAGCACTAGAGGAATGCTCAA 956
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 899 ATTACCCATCTGTGCAAGCCATTTCTATGGATCATATAGTAGCACTAGAGGAATGCTCAA 958
Query 957 GCTATGGAGGCAAAAGAGACTTCTCTGTCTCCATCAACCTAAGAGACCCAGTCACCTGCA 1016
|||||||||||||||||| |||||| | |||| |||||||||||| || |||||||||
Sbjct 959 GCTATGGAGGCAAAAGAGGTTTCTCTCTTTCCACCAACCTAAGAGATGCAATCACCTGCA 1018
Query 1017 ACGAACAAAAACAAGAA-A-CTAATTGC-GCCGGTTTTTCATCTACCAGTTCTTTCTCAT 1073
| |||| |||||||||| | | | || | ||| ||||||||||||||||| |||||||||
Sbjct 1019 ATGAACTAAAACAAGAACAGC-A-TT-CTGCCAGTTTTTCATCTACCAGTCCTTTCTCAT 1075
Query 1074 TACCAGTGGAGACCAAAATCAGCATGGTCTGGGTTGTTTTTGACAATGAAGA-----A-- 1126
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 1076 TACCAGTGGAGACCAAAATTAGCATGGTTTGGGTTGTTTTTGACAATGAAGATGGTGAAG 1135
Query 1127 --TCAGACAATGCAA-CAGAGAAAGCATACGAATGTTGATTATTCATCTCAAAAGGAAGT 1183
|||||||| |||| ||||||||||||| ||| |||||| ||||||||||| |||||||
Sbjct 1136 AATCAGACAA-GCAAACAGAGAAAGCATATGAACGTTGATCATTCATCTCAACAGGAAGT 1194
Query 1184 GTCTCTGAACGATTATATAATACTAGTGT 1212
|||| ||||||||||||||||||| |||
Sbjct 1195 GTCTG-GAACGATTATATAATACTAATGT 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5