BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473511
Length=983
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33330.1 | Symbols: | Class I peptide chain release factor ... 1343 0.0
> AT1G33330.1 | Symbols: | Class I peptide chain release factor
| chr1:12084951-12086528 FORWARD LENGTH=1081
Length=1081
Score = 1343 bits (727), Expect = 0.0
Identities = 905/990 (91%), Gaps = 16/990 (2%)
Strand=Plus/Plus
Query 1 ATGGCGATCATGGCCGTTGCCGCTCTCTTTCACGCCCGCTTCCCTCTTCTCCTCCGTCAC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 18 ATGGCGATCATGGCCGTTGCCGCTCTCTTTCACGCCCGCTTCCCTCTTCTCCTCCGTCGC 77
Query 61 AGTGTCCCGTCCAC-GTTTTCT-CTGTCTTCCGTCATATACTATCGCAGGACTGTTCCAT 118
||| |||||| || || || || |||| || || ||| ||| ||| ||| ||| ||
Sbjct 78 AGTATCCCGT-TACTGTCGGCTCCT-ACTTCTGTTATTTACAATCACAGAACTCTTCTAT 135
Query 119 CCAACGGACTCAGTACCCGATTCTGCTCGATTCTCCGTTATTCATCGTC---CGTCGACG 175
|| | ||||||||||| ||||| |||||||||||||||||||||||||| || || |
Sbjct 136 CCGATGGACTCAGTACTCGATTATGCTCGATTCTCCGTTATTCATCGTCTGACGGCGTCA 195
Query 176 GCGGTGGAAGTAGCAGTGGCGATTCCGTTAGCTTTAGCGATTCCGTTAGCGTTGTTGCGG 235
||| ||||||||| ||||||||| || || | || |||||||||||| |||||| |||
Sbjct 196 ACGGCGGAAGTAGCGGTGGCGATTTCGGTAACGATAACGATTCCGTTAGTGTTGTTTCGG 255
Query 236 ATGTTCAGAGTCCTAATTACTTGAAATTCACCGATGATGAATTGATGAAGCAATGTAGAT 295
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 256 ATGTTCAGAGTCCTAATTACTTAAAATTCACCGATGAAGAATTGATGAAGCAATGTAGAT 315
Query 296 TAGAGACATTCAGAGTTTCAGGACCTGGAGGACAACACCGGAACAAGCGTGACTCCGCCG 355
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TAGAGACATTTAGAGTTTCAGGACCTGGAGGACAACACCGGAACAAGCGTGACTCCGCCG 375
Query 356 TGCGTCTCAAACATCTCCCCACCGGAATCGTTGCTCAGGCCGTCGAGGATCGTTCACAGC 415
||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 376 TGCGTCTGAAACATCTCCCCACCGGAATCGTAGCTCAAGCCGTCGAAGATCGTTCACAGC 435
Query 416 ACAAGAACCGTGCTTCTGCTCTAAACCGGCTTCGTACGCTCCTGGCAATCAAAGTGAGGA 475
|||||||||||||||||||||||||||| |||||||||||||| || || |||||||| |
Sbjct 436 ACAAGAACCGTGCTTCTGCTCTAAACCGTCTTCGTACGCTCCTCGCCATTAAAGTGAGAA 495
Query 476 ACAAAGTGGACCTTGAAGCTTATGCTCCTCCTCCAGAGCTTCTTCAGATTCTACCTCCCA 535
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 496 ACAAAGTGGACATTGAAGCTTATGCTCCTCCTCCAGAGCTTCTTCAGATTCTACCTCCTA 555
Query 536 AGTCTACTATAAGAACTTCTTCTGGTTCACAGATTGGTCCCAACAATCCTAAATTTGTAC 595
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 AGTCTACCATTAGAACTTCTTCTGGTTCACAGATTGGTCCCAACAATCCTAAATTTGTAC 615
Query 596 CTGGAATGCAAGCTTTGCTTGATGTTATTTCTGCTTCTGATGGTTCTATCGCCGATTCTG 655
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 616 CTGGAATGCAAGCTTTGCTTGATGTTATTTCTGCTTCTGACGGTTCTATCGCTGATTCTG 675
Query 656 CCAAATTACTTGGTTTGAGCACTGGTGGCTTATCTCGTTTGATACTCTCCCATGATGGTC 715
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 CCAAATTGCTGGGTTTGAGCACTGGTGGCTTATCTCGTTTGATACTCTCCCATGATGGTC 735
Query 716 TTCGTATGGCCGTCAATAGCATGAGGGCAGCCAAGGGAATTAAGCCTCTCAAATAGTTGG 775
|||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 736 TTCGTATGGCTGTCAATAGCATGAGAGCAGCCAAGGGAATAAAGCCTCTCAAATAGTTGG 795
Query 776 GATGTATCGGCATTTGAAAGATGACGTGCGGGTCTTTGACGAGTTGTATTTAGGTGGCTT 835
||||||||||||||||||||||||||| |||| ||| ||| |||||||| | ||| ||
Sbjct 796 GATGTATCGGCATTTGAAAGATGACGTTCGGGCCTTCGACAAGTTGTAT---G-TGGATT 851
Query 836 CTGCAGCACAGTGACTACCATTTGATGCACCACATATTGTATACAAAACAAA-GGTGAAA 894
|||||||||||| |||||||| |||||||| || |||||||||||| ||| |||||||
Sbjct 852 --GCAGCACAGTGATTACCATTTTATGCACCATATTTTGTATACAAAAAAAAAGGTGAAA 909
Query 895 TGTTGAGTTCAGTCTAACATTTGTTCTTCTAACATCATAAAAATAGTCACGTGTTTGAGA 954
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 910 TGTTGAGTTCAGTTTAACATTTGTTCTTCTAACATCATAAAAATAGTCACGTATTTGAGA 969
Query 955 TGATATACTATAG-TCTGTTCAAATGTTTA 983
||||||||||||| | |||||||||| |||
Sbjct 970 TGATATACTATAGGT-TGTTCAAATGGTTA 998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48124312826
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5