BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473518 Length=1967 Score E Sequences producing significant alignments: (Bits) Value AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 3062 0.0 > AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:12144515-12147208 FORWARD LENGTH=2023 Length=2023 Score = 3062 bits (1658), Expect = 0.0 Identities = 1872/1967 (95%), Gaps = 48/1967 (2%) Strand=Plus/Plus Query 1 CCTCCTtc-tcttctctctctcgtctctcAACTACCGTTTCTCTGCTTCTTCTGTTCCCA 59 |||||||| || |||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 16 CCTCCTTCTTC-TCTCTCTCTCGTTTCTCAACTACCGTCTCTCTGCTTCTTCTGTTCCCA 74 Query 60 AAATCGGAAACTTTACTTCGTTGAATTTTCCTTTGTTTCTGAAATGGAAGACACAACATT 119 ||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 75 AAACCGGAAACTTTACTTCGTGGAATTTTCCCTTGTTTCTGAAATGGAAGACACAACATT 134 Query 120 CACCAAAGTGTTCGTTGGAGGATTAGCTTGGGAAACACACAAAATCTCTCTCAGGAATTA 179 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 135 TACCAAAGTGTTCGTTGGAGGATTAGCTTGGGAAACACACAAAGTCTCTCTCAGGAATTA 194 Query 180 CTTTGAACAGTTTGGGGACATTGTTGAAGCTGTCGTTATCACTGATAAATCTAGTGGTAG 239 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 195 CTTTGAACAGTTTGGTGACATTGTTGAAGCTGTCGTTATCACTGATAAATCTAGTGGTAG 254 Query 240 ATCTAAAGGCTACGGCTTTGTTACTTTTTGTGATCCGGAAGCAGCTCAGAAAGCTTGTGT 299 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 255 ATCTAAAGGCTATGGCTTTGTTACTTTTTGTGATCCGGAAGCAGCTCAGAAAGCTTGTGT 314 Query 300 AGATCCAGCTCCTGTTATTGATGGGAGAAGAGCTAATTGTAATCTTGCTGCTTTTGGTGT 359 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 315 AGATCCAGCTCCTGTTATTGATGGAAGAAGAGCTAATTGTAATCTTGCTGCTTTTGGTGT 374 Query 360 TCAGAGATCCAAACCTTCTTCTCCTATTCATGGACATGCAGGAGGAAGAGGCGGTATGAA 419 |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 375 TCAGAGATCCAAACCTTCTTCTCCTATTCATGGACATGTAGGAGGAAGAGGC---ATGAA 431 Query 420 GGTGACTAGCCCATTCAAGACACACTTTGGGGCCGCGGCTGCTGCTATTCCTTCCCCACT 479 |||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 432 GGTGACTAGCCCTTTCAAGACACACTTTGGGACCGCGGCTACTGCTATTCCTTCCCCACT 491 Query 480 TCCATTCTCCCACTACACACTTCCTTACACTAATCCTTTTGGGTTCTCTTCATACTCAAT 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 492 TCCATTCTCCCACTACACACTTCCTTACACTAATCCTTTTGGGTTCTCTTCATACTCAAT 551 Query 540 GGATTACAATTACCCCACGCAGAGCTACTACAATGTTTATGGAGGGGCAACTGCTCAGCA 599 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 552 GGATTACAATTACCCCACGCAGAGCTATTACAATGTTTATGGAGGGGCAACTGCTCAGCA 611 Query 600 TCCAATGTATGGTAGCGGACCAATGACTGGTGTAGCAGCAGCAACAGCAGCAGGGTTCTA 659 |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 612 TCCAATGTATGGAAGCGGACCAATGACTGGTGTAGCAGCAGCACCAGCAGCAGGGTTCTA 671 Query 660 CCCATATCTCCAGTTTGCTGAAGGAAATGGACCTGTCACTGGTTATGCTCCTCTCCATTA 719 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 672 CCCATATCTCCAGTTTGCTGAAGGAAATGGACCTGTCACTGGTTATGCTCCCCTCCACTA 731 Query 720 CCCCAACCACATGTTTCATTATTCTGCTACCGGGGGAAACTACCCGCATCACAATGGTTC 779 |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 732 CCCCAACCACATGTTTCACTATTCTGCTCCCGGGGGAAACTACCCGCATCACAATGGTTC 791 Query 780 ACCAGTGTCTCTTGCACCTTCACCGGTCATACCATCAGTTTGCTTTGCAGTTCCACAGGC 839 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 792 ACCAGTGTCTCTTGCACCTTCACCAGTCATACCATCAGTTTGCTTTGCAGTTCCACAGGC 851 Query 840 TTGACCATGAAGGCTCATGGTTCAACTCTTGATTCCATGATGCTATGTAGGGGACCAATT 899 |||||||||||||||| ||||||| | | |||||||||||||||||||||||||||| Sbjct 852 TTGACCATGAAGGCTCGTGGTTCA--TA--G-TTCCATGATGCTATGTAGGGGACCAATT 906 Query 900 CATTTAAATCCTTAAGGCAA-GCTTTGTTTACTACTTTCATCCACATGCCTCTGAAGTTC 958 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 907 CATTTAAATCCTTAAGGCAAAGCTTTGTTTACTACTTTCATCCACATGCCTCTGAAGTTT 966 Query 959 CACAAGACCTGTGGCCTAACCATGGTTGCCCTTTCCCCTTTATGCTTCTAACCCATTAGA 1018 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 967 CACAAGACCTGTGGCCTAACCATGGTTGCCCTTTTCCCTTTATGCTTCTAACCCATTAGA 1026 Query 1019 CAAAGAT-CCCAGAATTTGGAGTTTGGGAGTCTTTGCAAGTTCTAGTTAAGTCTCACATA 1077 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1027 CAAAGAAGCCCATAATTTGGAGTTTGGGCGTCTTTGCAAGTTCTAGTTAAGTCTCACATA 1086 Query 1078 GGGGTTTAACTTGGACCATCTTCATACACATTACTCATCTTTTCATTTTATTCATTGCAT 1137 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1087 GGGGTTTAACTAGGACCATCTTCATACACATTACTCATCTTTTCATTTTATTCATTGCAT 1146 Query 1138 TACATGCTTTCTGAACGAAGGTTTCGTTCAAGATAGCCTGTTCGAGCTGTAGAAGTAAA- 1196 ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1147 TACCTGCTTTCTGAACGAAGGTTTCGTTCAAGATAGCTTGTTCGAGCTGTAGAAGTAAAC 1206 Query 1197 --TT---G-C------ACAGTGCC-CGCGAAAGGCAAGCAATTTTGTAGAAAAACTTAAA 1243 || | | |||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 1207 AGTTACCGTCTTTTGCACAGTGCCTCGC-AAAGGCAAGCAATTTTGTAGAAAAACTTAAA 1265 Query 1244 AAGCTTAGGATTGGCTGATCAACAAGAAAGGAAATAAGGATTTCCCGGGAAAGGCACAAG 1303 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1266 AA-CTTAGGATTGGCTGATCAACAAGAAAGGAAATAAGGATTTCCCGGGAAAGGCACAAG 1324 Query 1304 AAGTGAAATGCCACCACCTGGAAGTGTTTGAAGTAGTGTGTGCAATGGTGTACCCACTAC 1363 ||||||| |||||||||||||||||||| |||||||||||||||| ||||| | |||||| Sbjct 1325 AAGTGAATTGCCACCACCTGGAAGTGTT-GAAGTAGTGTGTGCAAAGGTGTGCACACTAC 1383 Query 1364 TTCGCGCTATATCCATTTTAATGTGCAGTCTTAGGATTATTAGATCTAGGACCATGTTGT 1423 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1384 TTCACGCTATATCCATTTTAATGTGCAGTCTTAGGATTATTAGATCTAGGACCATGTTGT 1443 Query 1424 TACACATTGTCTTATCGTAGAACGCTAGAACATAAACTTCTTTTGAGGATAAAGGAATTG 1483 ||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1444 TACACATTGTCTTGTAGTAGAACGCTAGAACATAAACTTCCTTTGAGGATAAAGGAATTG 1503 Query 1484 CTAACCCATGTATATTCTCGGTGGCTAAGCTTTGGAGTTATAGCCACACTTGAGCTAACT 1543 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1504 CTAACACATGTATATTCTCGGTGGCTAAGCTTTGGAGTTATAGCCACACTTGAGCTAACT 1563 Query 1544 TTAGATTAAGATCATTTT-ACGATTCAAAAATTTAGATTGCTCATCATATCTTGAACCAA 1602 | |||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| Sbjct 1564 T-AGATTAAGATCATTTTTAAGATTCAAAA-TTTAGATTGCTCATCATATCTTGAACCAA 1621 Query 1603 CCCCACTAATGGATTGTGGGGT-CTTTGCATTTGCATGT-TTTT-GCCTCTTGGGAGATA 1659 |||||||||||||||||||||| ||| |||||||||||| |||| ||||||||||||||| Sbjct 1622 CCCCACTAATGGATTGTGGGGTTCTT-GCATTTGCATGTATTTTTGCCTCTTGGGAGATA 1680 Query 1660 TTTTGGTTCCCATTTAGGTTCTTCTCATAACA-TCAACCAAACCAGTTGACCAACCATGG 1718 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1681 TTTTGGTTCCC-TTTAGGTTCTTCTCATAACAATCAACCAAACCAGTTGACCAACCATGG 1739 Query 1719 TTAGGA-TTTCAGGTGAGAGGTTTTCATCACCTCTTTATCTCTCTTTT--ACT-CTTTCC 1774 |||||| ||||||||||||||| ||||||||||||||||||||||||| ||| |||||| Sbjct 1740 TTAGGAATTTCAGGTGAGAGGTATTCATCACCTCTTTATCTCTCTTTTGTACTTCTTTCC 1799 Query 1775 TCTGTTTCTTCAAAGACTAAAAACTCTCTTTT-ATGTA-TTTGTTGTTAT--CTTGTAAG 1830 ||| ||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||| Sbjct 1800 TCTATTTCTTCAA-GACTAAAAACTCTCTTTTTATGTAATTTGTTGTTATATCTTGTAAG 1858 Query 1831 CTGTGTGTTTCTGATTCTATGTAAGAAAAC-AAAACCTTTCATTTTCCATCCGCGGTGGT 1889 |||||||||||||||||||||||||||||| |||| |||||| ||||||||| ||||||| Sbjct 1859 CTGTGTGTTTCTGATTCTATGTAAGAAAACTAAAAGCTTTCAGTTTCCATCCTCGGTGGT 1918 Query 1890 TGGAAAATGAAACTGTGATTGCAATATTTTACTTTGATCTGATATAT 1936 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1919 TGGAAAATGAAACTGTGATTGCAATATTTTACTTTGATCTGATATAT 1965 Score = 58.4 bits (31), Expect = 3e-07 Identities = 31/31 (100%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1937 TTATGACAATGTCTCCTACTATATGAATCCC 1967 ||||||||||||||||||||||||||||||| Sbjct 1983 TTATGACAATGTCTCCTACTATATGAATCCC 2013 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97439257845 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5