BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473518
Length=1967
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 3062 0.0
> AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144515-12147208 FORWARD LENGTH=2023
Length=2023
Score = 3062 bits (1658), Expect = 0.0
Identities = 1872/1967 (95%), Gaps = 48/1967 (2%)
Strand=Plus/Plus
Query 1 CCTCCTtc-tcttctctctctcgtctctcAACTACCGTTTCTCTGCTTCTTCTGTTCCCA 59
|||||||| || |||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 16 CCTCCTTCTTC-TCTCTCTCTCGTTTCTCAACTACCGTCTCTCTGCTTCTTCTGTTCCCA 74
Query 60 AAATCGGAAACTTTACTTCGTTGAATTTTCCTTTGTTTCTGAAATGGAAGACACAACATT 119
||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 75 AAACCGGAAACTTTACTTCGTGGAATTTTCCCTTGTTTCTGAAATGGAAGACACAACATT 134
Query 120 CACCAAAGTGTTCGTTGGAGGATTAGCTTGGGAAACACACAAAATCTCTCTCAGGAATTA 179
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 135 TACCAAAGTGTTCGTTGGAGGATTAGCTTGGGAAACACACAAAGTCTCTCTCAGGAATTA 194
Query 180 CTTTGAACAGTTTGGGGACATTGTTGAAGCTGTCGTTATCACTGATAAATCTAGTGGTAG 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 CTTTGAACAGTTTGGTGACATTGTTGAAGCTGTCGTTATCACTGATAAATCTAGTGGTAG 254
Query 240 ATCTAAAGGCTACGGCTTTGTTACTTTTTGTGATCCGGAAGCAGCTCAGAAAGCTTGTGT 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 ATCTAAAGGCTATGGCTTTGTTACTTTTTGTGATCCGGAAGCAGCTCAGAAAGCTTGTGT 314
Query 300 AGATCCAGCTCCTGTTATTGATGGGAGAAGAGCTAATTGTAATCTTGCTGCTTTTGGTGT 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 315 AGATCCAGCTCCTGTTATTGATGGAAGAAGAGCTAATTGTAATCTTGCTGCTTTTGGTGT 374
Query 360 TCAGAGATCCAAACCTTCTTCTCCTATTCATGGACATGCAGGAGGAAGAGGCGGTATGAA 419
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 375 TCAGAGATCCAAACCTTCTTCTCCTATTCATGGACATGTAGGAGGAAGAGGC---ATGAA 431
Query 420 GGTGACTAGCCCATTCAAGACACACTTTGGGGCCGCGGCTGCTGCTATTCCTTCCCCACT 479
|||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 432 GGTGACTAGCCCTTTCAAGACACACTTTGGGACCGCGGCTACTGCTATTCCTTCCCCACT 491
Query 480 TCCATTCTCCCACTACACACTTCCTTACACTAATCCTTTTGGGTTCTCTTCATACTCAAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TCCATTCTCCCACTACACACTTCCTTACACTAATCCTTTTGGGTTCTCTTCATACTCAAT 551
Query 540 GGATTACAATTACCCCACGCAGAGCTACTACAATGTTTATGGAGGGGCAACTGCTCAGCA 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 552 GGATTACAATTACCCCACGCAGAGCTATTACAATGTTTATGGAGGGGCAACTGCTCAGCA 611
Query 600 TCCAATGTATGGTAGCGGACCAATGACTGGTGTAGCAGCAGCAACAGCAGCAGGGTTCTA 659
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 612 TCCAATGTATGGAAGCGGACCAATGACTGGTGTAGCAGCAGCACCAGCAGCAGGGTTCTA 671
Query 660 CCCATATCTCCAGTTTGCTGAAGGAAATGGACCTGTCACTGGTTATGCTCCTCTCCATTA 719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 672 CCCATATCTCCAGTTTGCTGAAGGAAATGGACCTGTCACTGGTTATGCTCCCCTCCACTA 731
Query 720 CCCCAACCACATGTTTCATTATTCTGCTACCGGGGGAAACTACCCGCATCACAATGGTTC 779
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 732 CCCCAACCACATGTTTCACTATTCTGCTCCCGGGGGAAACTACCCGCATCACAATGGTTC 791
Query 780 ACCAGTGTCTCTTGCACCTTCACCGGTCATACCATCAGTTTGCTTTGCAGTTCCACAGGC 839
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 792 ACCAGTGTCTCTTGCACCTTCACCAGTCATACCATCAGTTTGCTTTGCAGTTCCACAGGC 851
Query 840 TTGACCATGAAGGCTCATGGTTCAACTCTTGATTCCATGATGCTATGTAGGGGACCAATT 899
|||||||||||||||| ||||||| | | ||||||||||||||||||||||||||||
Sbjct 852 TTGACCATGAAGGCTCGTGGTTCA--TA--G-TTCCATGATGCTATGTAGGGGACCAATT 906
Query 900 CATTTAAATCCTTAAGGCAA-GCTTTGTTTACTACTTTCATCCACATGCCTCTGAAGTTC 958
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 907 CATTTAAATCCTTAAGGCAAAGCTTTGTTTACTACTTTCATCCACATGCCTCTGAAGTTT 966
Query 959 CACAAGACCTGTGGCCTAACCATGGTTGCCCTTTCCCCTTTATGCTTCTAACCCATTAGA 1018
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 967 CACAAGACCTGTGGCCTAACCATGGTTGCCCTTTTCCCTTTATGCTTCTAACCCATTAGA 1026
Query 1019 CAAAGAT-CCCAGAATTTGGAGTTTGGGAGTCTTTGCAAGTTCTAGTTAAGTCTCACATA 1077
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1027 CAAAGAAGCCCATAATTTGGAGTTTGGGCGTCTTTGCAAGTTCTAGTTAAGTCTCACATA 1086
Query 1078 GGGGTTTAACTTGGACCATCTTCATACACATTACTCATCTTTTCATTTTATTCATTGCAT 1137
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 GGGGTTTAACTAGGACCATCTTCATACACATTACTCATCTTTTCATTTTATTCATTGCAT 1146
Query 1138 TACATGCTTTCTGAACGAAGGTTTCGTTCAAGATAGCCTGTTCGAGCTGTAGAAGTAAA- 1196
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1147 TACCTGCTTTCTGAACGAAGGTTTCGTTCAAGATAGCTTGTTCGAGCTGTAGAAGTAAAC 1206
Query 1197 --TT---G-C------ACAGTGCC-CGCGAAAGGCAAGCAATTTTGTAGAAAAACTTAAA 1243
|| | | |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1207 AGTTACCGTCTTTTGCACAGTGCCTCGC-AAAGGCAAGCAATTTTGTAGAAAAACTTAAA 1265
Query 1244 AAGCTTAGGATTGGCTGATCAACAAGAAAGGAAATAAGGATTTCCCGGGAAAGGCACAAG 1303
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 AA-CTTAGGATTGGCTGATCAACAAGAAAGGAAATAAGGATTTCCCGGGAAAGGCACAAG 1324
Query 1304 AAGTGAAATGCCACCACCTGGAAGTGTTTGAAGTAGTGTGTGCAATGGTGTACCCACTAC 1363
||||||| |||||||||||||||||||| |||||||||||||||| ||||| | ||||||
Sbjct 1325 AAGTGAATTGCCACCACCTGGAAGTGTT-GAAGTAGTGTGTGCAAAGGTGTGCACACTAC 1383
Query 1364 TTCGCGCTATATCCATTTTAATGTGCAGTCTTAGGATTATTAGATCTAGGACCATGTTGT 1423
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 TTCACGCTATATCCATTTTAATGTGCAGTCTTAGGATTATTAGATCTAGGACCATGTTGT 1443
Query 1424 TACACATTGTCTTATCGTAGAACGCTAGAACATAAACTTCTTTTGAGGATAAAGGAATTG 1483
||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1444 TACACATTGTCTTGTAGTAGAACGCTAGAACATAAACTTCCTTTGAGGATAAAGGAATTG 1503
Query 1484 CTAACCCATGTATATTCTCGGTGGCTAAGCTTTGGAGTTATAGCCACACTTGAGCTAACT 1543
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 CTAACACATGTATATTCTCGGTGGCTAAGCTTTGGAGTTATAGCCACACTTGAGCTAACT 1563
Query 1544 TTAGATTAAGATCATTTT-ACGATTCAAAAATTTAGATTGCTCATCATATCTTGAACCAA 1602
| |||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct 1564 T-AGATTAAGATCATTTTTAAGATTCAAAA-TTTAGATTGCTCATCATATCTTGAACCAA 1621
Query 1603 CCCCACTAATGGATTGTGGGGT-CTTTGCATTTGCATGT-TTTT-GCCTCTTGGGAGATA 1659
|||||||||||||||||||||| ||| |||||||||||| |||| |||||||||||||||
Sbjct 1622 CCCCACTAATGGATTGTGGGGTTCTT-GCATTTGCATGTATTTTTGCCTCTTGGGAGATA 1680
Query 1660 TTTTGGTTCCCATTTAGGTTCTTCTCATAACA-TCAACCAAACCAGTTGACCAACCATGG 1718
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1681 TTTTGGTTCCC-TTTAGGTTCTTCTCATAACAATCAACCAAACCAGTTGACCAACCATGG 1739
Query 1719 TTAGGA-TTTCAGGTGAGAGGTTTTCATCACCTCTTTATCTCTCTTTT--ACT-CTTTCC 1774
|||||| ||||||||||||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct 1740 TTAGGAATTTCAGGTGAGAGGTATTCATCACCTCTTTATCTCTCTTTTGTACTTCTTTCC 1799
Query 1775 TCTGTTTCTTCAAAGACTAAAAACTCTCTTTT-ATGTA-TTTGTTGTTAT--CTTGTAAG 1830
||| ||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 1800 TCTATTTCTTCAA-GACTAAAAACTCTCTTTTTATGTAATTTGTTGTTATATCTTGTAAG 1858
Query 1831 CTGTGTGTTTCTGATTCTATGTAAGAAAAC-AAAACCTTTCATTTTCCATCCGCGGTGGT 1889
|||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||||
Sbjct 1859 CTGTGTGTTTCTGATTCTATGTAAGAAAACTAAAAGCTTTCAGTTTCCATCCTCGGTGGT 1918
Query 1890 TGGAAAATGAAACTGTGATTGCAATATTTTACTTTGATCTGATATAT 1936
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 TGGAAAATGAAACTGTGATTGCAATATTTTACTTTGATCTGATATAT 1965
Score = 58.4 bits (31), Expect = 3e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1937 TTATGACAATGTCTCCTACTATATGAATCCC 1967
|||||||||||||||||||||||||||||||
Sbjct 1983 TTATGACAATGTCTCCTACTATATGAATCCC 2013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97439257845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5