BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473523
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33500.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1182 0.0
> AT1G33500.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:12152573-12154715
FORWARD LENGTH=976
Length=976
Score = 1182 bits (640), Expect = 0.0
Identities = 762/820 (93%), Gaps = 11/820 (1%)
Strand=Plus/Plus
Query 1 CCGCTAGTTTCAAAATTTTGTCGCCATTTCGAAATTTCTCTGAAGGTGAGAGCTCGCGGT 60
||||||||||||||| |||||| |||||||||||| |||| ||||| ||||||||||| |
Sbjct 10 CCGCTAGTTTCAAAAATTTGTCACCATTTCGAAATCTCTCAGAAGGCGAGAGCTCGCGTT 69
Query 61 TGAATTgaagaaatcggagaagtgaagaagaagaagaagaagaagaagagaTGGAGGAGT 120
||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 70 TGAATTGAAGAAATCCGAGAAGT---------GAAGAAGAAGAAGAAGAGATGGAGGAGT 120
Query 121 ATCTACAGTATATGAAGACTCTCCGGTCTCAAATGACTGATGTGGAGGATCACGCGGCGA 180
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 121 ATCTACAGTATATGAAGACTCTCCGTTCTCAGATGACTGATGTGGAGGATCATGCGGCGA 180
Query 181 AGGTCTCCGTCGAGGAACAGATGCAGGTTACAACAATCAATACCTTGGAGAAAGATCTCG 240
|||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 181 AGGTCTCCGTTGAGGAACAGATGCAGGTTACAACAATCAGTACCTTGGAAAAAGATCTCG 240
Query 241 ATCATGCATTGTCTGAAACGAAGAGACTTAAAGAGGAAACGGATCAGAAGACGAGGAAGA 300
| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||| | |
Sbjct 241 AACATGCATTGTCTGAGACGAAGAGACTGAAAGAGGAGACGGATCAGAAGACGAGG-ACA 299
Query 301 A-AGGCGAAATATGCTCACATATACTTGAGAAGCAGAGAAAAATTTCGTCCATGGAATCT 359
| ||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 300 AGAGGTGAGATATGCTCACATATACTTGAGAAGCAGAGGAAAATTTCGTCGATGGAATCT 359
Query 360 GATTCAGCAAATCTTTCACAGAGTCTGGAGCTTATTCTTCAAGAACGAGACAGTTTATCT 419
||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 GATTCAGTTAATATTGCACAGAGTTTGGAGCTTATTCTTCAAGAACGAGACAGTTTATCT 419
Query 420 GCAAAACTTGTGTTGAAACGTTCTAACTATGTCAAGACGGCAGAAGAAGCTAGAACCAAA 479
|| ||||| || | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 GCTAAACTCGTATCGAAACGTTCTAACTATCTCAAGACGGCAGAAGAAGCTAGAACCAAA 479
Query 480 CTAGAGGAGCAAAAGGGCTGGTTTATCTCCCATATGAGCAATGAAACTGGTCAACAAGGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTAGAGGAGCAAAAGGGCTGGTTTATCTCCCATATGAGCAATGAAACTGGTCAACAAGGA 539
Query 540 CAGAAAAAAGAGACAAGGAATAACCTGTTGGAACTATCAGATTCTGCAAGAGCAAAGCTT 599
|| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 540 CATAAAAAAGAGACAAGGAATAACCTGATGGAACTATCAGATTCTGCTAGAGCAAAGCTT 599
Query 600 GATCAAGCAAAACAGATGAGATCCAACCTTCTTCAGGAAATTTCGAAGATCAAGCTATCA 659
||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 600 GATCAAGCAAAACTGATGAGATCCAACCTTCTTCAGGAAAATTCGAAGATCAAACTATCA 659
Query 660 ATTGAGAATGTGAAGCACAAAATTAATGAGTTTAAGCCAGAGTTGATGTCGGTGGATATT 719
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 660 ATTGAGAATGTGAAGCACAAGATTAATGAGTTTAAGCCAGAGTTAATGTCAGTGGATATT 719
Query 720 AAGGTTCTAGAAGAGGAATACACAGCTCTCTTGTCAGATGAGTCTGGAGAGGCAGAGTAT 779
||| | ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 720 AAGATCCTAGAAGAGGAATACACAGCTCTATTGTCAGATGAGTCCGGAGAGGCAGAGTAT 779
Query 780 CTAAGTTCGCTGCAGAGTCAGGCTGAGAAACTGAAGGTGA 819
|| |||||||| ||||||||||||||||||||||||||||
Sbjct 780 CTCAGTTCGCTACAGAGTCAGGCTGAGAAACTGAAGGTGA 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5