BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473532
Length=1301
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33780.1 | Symbols: | Protein of unknown function (DUF179) ... 1836 0.0
> AT1G33780.1 | Symbols: | Protein of unknown function (DUF179)
| chr1:12244585-12246188 REVERSE LENGTH=1346
Length=1346
Score = 1836 bits (994), Expect = 0.0
Identities = 1197/1290 (93%), Gaps = 33/1290 (3%)
Strand=Plus/Plus
Query 30 ATTCTTCTTCTCATCGCTTCT-TTATA-CGAATCAAACTCAAAAACACTTCACTC-TCTC 86
||||||| |||||||||||| || || | |||||||||| |||||||||||| |||
Sbjct 70 ATTCTTCCACTCATCGCTTCTCTT-TACCAAATCAAACTC---AACACTTCACTCAACTC 125
Query 87 TTATCGGATCTTCCAAAGTATATCCTTCAATGGATCTATGGACTCTTCAAGTAAAGGACG 146
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||
Sbjct 126 TTATCGGACCTTCCAAACTATATCCTTCAATGGATCTATGGACTCTTCAATTAAAAGACG 185
Query 147 TTACGATCCGAAACCCTATC-T-TC-TCATCG-T--CGGTGAAATCATCATCAATTTCTG 200
| |||||||||||||||||| | || |||||| | | | ||||||||| || |||||
Sbjct 186 TCACGATCCGAAACCCTATCTTCTCATCATCGATCCCTGAGAAATCATCGTCGTTTTCTA 245
Query 201 GGAAAATCGGTGAATTGGAGTTTAGATTTCTCAAACGTAAGGTTTCTTCTCCTTCTCCGT 260
||||| | |||||||||||||||| |||||||| ||||||| | |||| |||||||||
Sbjct 246 GGAAACTTTGTGAATTGGAGTTTAGGTTTCTCAATCGTAAGG--T-TTCTGCTTCTCCGT 302
Query 261 ATCGTTCTTTGGTTGTTCGAGCTTCGTCGAAGAAGAGTAACGACGATTCTTCTGCTTCTG 320
||||||| ||||||||||||||| | ||||||||||||||||||||||| | | |||||
Sbjct 303 ATCGTTCCTTGGTTGTTCGAGCTACCTCGAAGAAGAGTAACGACGATTC-T-T-CTTCTC 359
Query 321 CTGGAGATGCTTCTCAGGAAAACAAACCTTCTAATGGTAACAAATCCGGCGATTCCGCGG 380
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 360 CTGGAGATGCTTCTCAGGAAAACAAACCTTCTAACGGCAACAAGTCCGGCGATTCCGCGG 419
Query 381 CTCCGAAGTCGTTCGGTTTAAACGCGGATTGGAGAGAGTTTAGAGCGAACTTGTTTATGA 440
||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 420 CTCCGAAATCGTTCGGTTTAAACACGGATTGGAGAGAGTTCAGAGCGAACTTGTTTATGA 479
Query 441 AAGAGCAGGAAGAAAAGGCGGAAGCTGAGGGTAATGAATCGGAACCGATAGGGTTGAAAT 500
|||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||
Sbjct 480 AAGAGCAGGAAGAAAAGGCGGAAGCTGAGGGTCATGAATCGGAACCTATAGGTTTGAAAT 539
Query 501 GGGCGCATCCGATTCCGTTTCCTGAGACTGGTTGTGTTCTAGTTGCTACAGAGAAGCTAG 560
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGGCACATCCGATTCCGTTTCCTGAGACTGGTTGTGTTCTAGTTGCTACAGAGAAGCTAG 599
Query 561 ATGGTTATAGAACATTTGCGAGAACGGTTGTGCTTCTTCTTAGAGCAGGAACTAGACATC 620
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 600 ATGGTTATAGAACATTTGCGAGAACTGTTGTGCTTCTTCTTAGAGCAGGTACTAGACACC 659
Query 621 CACAAGAAGGGCCGTTTGGTGTTGTTATCAACCGTCCACTTCATAAAAACATCAAGCATA 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CACAAGAAGGGCCGTTTGGTGTTGTTATCAACCGTCCACTTCATAAAAACATCAAGCATA 719
Query 681 TGAAATCAACGAAAACCGAGCTCGCTACCACGTTTTCTGAATGTTCTTTGTACTTTGGTG 740
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 720 TGAAATCAACGAAAACCGAGCTCGCTACTACGTTTTCTGAATGTTCTTTGTACTTTGGTG 779
Query 741 GACCTCTTGAAGCAAGCATGTTCTTGTTGAAAAAC-GGCGATAAAACTAAGATACC-GGG 798
| |||||||||||||||||||| |||||||||| | || |||||||| |||||||| |||
Sbjct 780 GTCCTCTTGAAGCAAGCATGTTTTTGTTGAAAA-CTGGTGATAAAACCAAGATACCTGGG 838
Query 799 TTTTGAAGAAGTCATGCCCGGGCTTAACTTTGGTACTCGAAACAGTTTGGATGAAGCTGC 858
||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 839 TTT-GAAGAAGTCATGCCGGGGCTTAACTTTGGTACTCGAAATAGTTTGGATGAAGCTGC 897
Query 859 AGTGCTTGTAAAGAAGGGAATTCTTAAGCCACAGGAGTTTAGATTCTTTGTTGGTTACGC 918
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AGTGCTTGTAAAGAAGGGAGTTCTTAAGCCACAGGAGTTTAGATTCTTTGTTGGTTACGC 957
Query 919 CGGTTGGCAGCTGGATCAGCTCAGAGAAGAGATCAAATCAGATTACTGGCATGTTGCTGC 978
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 958 CGGTTGGCAGCTAGATCAGCTCAGAGAAGAGATTGAATCAGATTACTGGCATGTTGCTGC 1017
Query 979 TTGCAGCTCAGATTTGATATGCGGAGCTTCATCGGAAAACTTGTGGGAAGAGATTTTACA 1038
|||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1018 GTGCAGCTCGGATTTAATATGCGGAGCTTCTTCGGAAAACTTGTGGGAGGAGATTTTACA 1077
Query 1039 GTTAATGGGCGGTCAATACTCCGAGCTTAGCCGGAAACCCAAGCTGGATATCTAGAAGTT 1098
||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 1078 GTTAATGGGCGGTCAATACTCCGAGCTTAGCCGAAAACCTAAGCTGGATATCT-GAAGTT 1136
Query 1099 TTCTAAGAGAACTTGAGGCTTTTT-ATAACTTATATATATTTTCTCTATTAAGCCAATTT 1157
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1137 TTCTAAGAGAACTTGAGGCTTTTTTATAACTTATATATATTTTCTCTATTAAGCCGATTT 1196
Query 1158 GTATAGCTTACTT-CGCTGGCTTTGTATGTGAGAATAATGCACTTCTATGCTATTTATAA 1216
||||||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1197 GTATAGCTTACTTTCGTTGGCTT-GTACGTGAGAATAATGCACTTCTATGCTATTTATAA 1255
Query 1217 AGATTTGCTTTGTGAAAAC----TCCTATTATGTATTCTGCAGTTAATAACTAAA-AGAC 1271
||||||||||||||||||| |||||||||||||||||||||| ||||||||| | ||
Sbjct 1256 AGATTTGCTTTGTGAAAACACACTCCTATTATGTATTCTGCAGTTTATAACTAAACA-AC 1314
Query 1272 ATCTATCTAATAAATTGAAACAGTTGTTCT 1301
||||||||||||||||||||||||||||||
Sbjct 1315 ATCTATCTAATAAATTGAAACAGTTGTTCT 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64005694875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5