BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473537
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33811.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1751 0.0
> AT1G33811.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:12267866-12269913 FORWARD LENGTH=1388
Length=1388
Score = 1751 bits (948), Expect = 0.0
Identities = 1055/1107 (95%), Gaps = 5/1107 (0%)
Strand=Plus/Plus
Query 65 GTTTTGTATT-G-TTGAAAACGGCTGTGTCACAACCACAACAACAGGCACAAGTCCCATG 122
||||||| || | || |||||| | |||||||| ||||||||||||||||||||||||||
Sbjct 95 GTTTTGT-TTGGTTTTAAAACGACCGTGTCACAGCCACAACAACAGGCACAAGTCCCATG 153
Query 123 TTTATTCATCTTCGGTGACTCCTTAGTCGACAATGGAAACAACAACAGGTTGCTTTCGCT 182
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 154 TTTATTCATCTTCGGTGACTCTTTAGTCGACAATGGAAACAACAATAGGTTGCTTTCTCT 213
Query 183 TGCGAGGGCTAATTACCGACCTTATGGCATTGACTTTCCCCAAGGTACAACGGGACGGTT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 TGCGAGGGCTAATTACCGACCTTATGGCATTGACTTTCCCCAAGGTACAACGGGACGGTT 273
Query 243 CACCAACGGTCGCACCTACGTTGATGCACTAGCTCAAATTCTTGGATTTCGGG-CTTACA 301
||||||||||||||||||||||||||||||||||||||||||||||||| || || | |
Sbjct 274 CACCAACGGTCGCACCTACGTTGATGCACTAGCTCAAATTCTTGGATTTAGGAACT-ATA 332
Query 302 TTGCACCATATTCCAGGATTCGTGGCCAGGCTATACTAAGAGGTGCGAATTTCGCATCTG 361
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 333 TTCCACCATATTCCAGGATTCGTGGCCAGGCTATACTTAGAGGTGCGAATTTCGCATCTG 392
Query 362 GTGCAGCTGGCATTAGAGATGAAACCGGTGACAACTTGGGTGCACATACTTCAATGAACC 421
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 393 GTGCAGCTGGCATTAGAGATGAGACCGGTGACAACTTGGGTGCACATACTTCTATGAACC 452
Query 422 AGCAGGTAGAGCTGTACACGAGCGCGGTTCAACAGATGCTTCGATACTTCAGAGGAGACA 481
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 453 AGCAGGTAGAGCTATACACGACCGCGGTTCAACAGATGCTTCGATACTTCAGAGGAGACA 512
Query 482 CAAATGAGCTGCAAAGATACTTAAGCCGTTGTATCTTTTATTCGGGAATGGGAAGTAACG 541
|||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 513 CAAATGAGCTCCAGAGATACTTAAGCCGTTGTATCTTTTACTCGGGAATGGGAAGTAACG 572
Query 542 ATTATCTCAACAATTACTTCATGCCTGACTTCTACTCAACCAGTACCAATTTCAATGACA 601
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 573 ATTATCTCAACAATTACTTCATGCCTGACTTTTACTCAACCAGTACCAATTACAATGACA 632
Query 602 AAACCTTTGCAGAGTCTCTCATAAAGAACTACACGCAACAGCTCACGCGGTTGTACCAAT 661
|||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 633 AAACCTTTGCTGAGTCTCTGATAAAGAACTACACACAACAGCTCACGCGATTGTACCAAT 692
Query 662 TTGGAGCTCGGAAAGTGATTGTGACTGGAGTGGGACAGATCGGTTGCATACCTTACCAGC 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TTGGAGCTCGGAAAGTGATTGTGACTGGAGTGGGACAGATCGGTTGCATACCTTACCAGC 752
Query 722 TCGCCCGCTACAATAACCGTAACAATAGTACTGGCAGATGCAACGACAAGATTAACAACG 781
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 753 TCGCCCGCTACAATAATCGTAACAATAGTACTGGCAGATGCAACGAAAAGATTAACAACG 812
Query 782 CAATTGTGGTGTTCAACTCTCAAGTCAAGAAACTAGTGGACCGTTTCAACAAAGGTCAAT 841
||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 813 CAATTGTGGTGTTTAACACTCAAGTCAAGAAACTAGTGGACCGTTTAAACAAAGGTCAGT 872
Query 842 TGAAGGGAGCCAAGTTCGTTTATCTTGATTCCTACAAGAGTACCTATGATCTCGCTGTCA 901
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 873 TGAAGGGAGCAAAGTTTGTTTACCTTGATTCCTACAAGAGTACCTATGATCTCGCCGTCA 932
Query 902 ATGGAGCTACTTACGGATTTGAGGTTGTGGACAAAGGTTGTTGTGGGGTGGGGAGGAACA 961
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 ATGGAGCCGCTTACGGATTTGAGGTTGTGGACAAAGGTTGTTGTGGGGTGGGGAGGAACA 992
Query 962 ATGGTCAGATCACGTGTCTGCCGCTGCAGACCCCGTGCCCTGACCGAACCAAGTATCTCT 1021
|||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 ATGGTCAGATAACATGTTTGCCGCTGCAGACCCCGTGCCCTGACCGAACCAAGTATCTCT 1052
Query 1022 TTTGGGATGCGTTTCATCCAACGGAGACTGCTAACATATTGCTGGCGAAATCTAATTTTT 1081
||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1053 TTTGGGACGCGTTTCATCCGACGGAGACTGCTAACATACTGCTGGCGAAATCTAATTTTT 1112
Query 1082 ACTCCCGAGCTTACACTTACCCCATCAACATTCAAGAACTAGCCAATATTTGAAGAAATA 1141
|||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 1113 ACTCCCGAGCTTACACTTACCCAATCAACATCCAAGAACTAGCCAATCTTTGAAGAAATA 1172
Query 1142 AGATCTTGATCTCCCATATGAATGCAT 1168
| |||||||||||||||||||||||||
Sbjct 1173 ATATCTTGATCTCCCATATGAATGCAT 1199
Score = 187 bits (101), Expect = 2e-46
Identities = 114/120 (95%), Gaps = 1/120 (1%)
Strand=Plus/Plus
Query 1167 ATTTCCTATGTATTAACTAATGTTTCTTTGAAATAACTAATGTTTCTTTGTTTCTGTATT 1226
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 ATTTCCTATGTGTTAACTTATGTTTCTTTGAAATAACTAATGTTTCTTTGTTTCTGTATT 1296
Query 1227 GTTCCTCT-ACTTAACTCTCAACTATGAGAGAAACATATGACACAAGTGCTCACTTTGAT 1285
|||||||| || |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1297 GTTCCTCTTACGTAACTCTCAAATATAAGAGAAACATATGACACAAGTGCTCACTTTGAT 1356
Score = 117 bits (63), Expect = 3e-25
Identities = 74/79 (94%), Gaps = 2/79 (3%)
Strand=Plus/Plus
Query 1 CTCATTCTTCTTAAGATCCATTAAAACATTATTTCACTAAATTATAACTTAATGGGCATT 60
|||||||||||||| | ||||| | | |||||||||||||||||||||||||||||||||
Sbjct 4 CTCATTCTTCTTAAAAACCATT-ACA-ATTATTTCACTAAATTATAACTTAATGGGCATT 61
Query 61 CTCCGTTTTGTATTGTTGA 79
|||||||||||||||||||
Sbjct 62 CTCCGTTTTGTATTGTTGA 80
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63252686700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5