BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473540
Length=608
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33840.1 | Symbols: | Protein of unknown function (DUF567) ... 837 0.0
AT2G14560.1 | Symbols: LURP1 | Protein of unknown function (DUF... 621 2e-177
> AT1G33840.1 | Symbols: | Protein of unknown function (DUF567)
| chr1:12283862-12285306 REVERSE LENGTH=693
Length=693
Score = 837 bits (453), Expect = 0.0
Identities = 518/549 (94%), Gaps = 6/549 (1%)
Strand=Plus/Plus
Query 63 GTGATAGTAGATCCAAAGTACTGCTCTTC-GCACCCTGTAGATTTGGCGATCGTACGGAA 121
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 76 GTGATAGTGGATCCAAAGTACTGCTC-TCTGCACCCTGTAGATTTGGCGATCGTACGGAA 134
Query 122 GATAATGAAGATAACGGACGGTAACTTCGTGATAAAGAATGGGGAAGGAAACTTGTTGTT 181
| | |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 135 GGTGTTGAAGATAACGGACGGTAACTTCGTGATAACGAATGCGGAAGGAAACTTGTTGTT 194
Query 182 CAAGGTGAATGATCCTTTCTTTAGTATTCACGAGAAGAGGATCTTGGTGGATGGTTATGG 241
||||||||| |||||||| |||||| |||||||||||||||||||| ||||||||| |||
Sbjct 195 CAAGGTGAAGGATCCTTTTTTTAGTCTTCACGAGAAGAGGATCTTGATGGATGGTTTTGG 254
Query 242 AACTAAGGTCTTGACTTTGAAAGGGAAGATAATGACCATGCATGACAGGTGGCGAGTGTT 301
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 255 AACTAAGGTCTTGACTTTGAAAGGGAAGATAATGACCATGCATGACAGGTGGCTAGTGTT 314
Query 302 TAGAGGAGGGAGTACGGAGGAGAGT-GATCTGCTATACACGGTGAAAAGATCAAACATGA 360
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 315 TAGAGGAGGGAGTACGGAGGAG-GTTGATCTGCTATACACGGTGAAAAGATCAAACATGG 373
Query 361 TTCAGCTAACCACCAAACTTGATGTGTTTTTGGCTGACAACATAGAGGAGAAGAAATGTG 420
||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 374 TTCAGATAACCACCAAACTTGATGTGTTTTTGGCTGATAACATAGAGCAGAAGAAATGTG 433
Query 421 ATTACAGAGTCGAAGGTGTTTGGCTCGAGAGTTCTTGTTTTGTCTACGCCGGCGATTCTG 480
|||||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 434 ATTACAGACTCGAAGGGGTTTGGCTCGAGACTTCTTGTTTTGTCTACGCTGGCGATTCTG 493
Query 481 ACATCATTGTTGCCCAAATGCGCGAGAAGAAAACGATGCAGAGCGTTTTCTTGGGAAAGG 540
|||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 494 ACATCATTCTTGCCCAAATGCGCGAGAAGAAAACGATGCAGAGCGTTCTCTTTGGAAAGG 553
Query 541 ATCA-TTTCTGCGTCACTGTTAATCCAAATGTTGATTATGCCTTCATTGCCTCTCTCATT 599
| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 A-CAATTTCTGCCTCACTGTTAATCCAAATGTTGATTATGCCTTCATTGCCTCTCTCATT 612
Query 600 GTTATCCTT 608
|| ||||||
Sbjct 613 GTCATCCTT 621
> AT2G14560.1 | Symbols: LURP1 | Protein of unknown function (DUF567)
| chr2:6213972-6215901 FORWARD LENGTH=1533
Length=1533
Score = 621 bits (336), Expect = 2e-177
Identities = 526/616 (85%), Gaps = 19/616 (3%)
Strand=Plus/Plus
Query 1 CAAAACTGAGAGAGAGTATCCATATTTGGA-GGAAAAAGAAAAGAATGCAGCAGCCCTAT 59
||||| ||||||| |||||||| |||||| || |||| |||| |||||||||||| |
Sbjct 135 CAAAAGAGAGAGAGTGTATCCATTTTTGGAGGGGAAAA-CAAAGTATGCAGCAGCCC--T 191
Query 60 ATGGTGATAGTAGATCCAAAGTACTGCTCTTCGCACCCTGTAGATTTGGCGATCGTACGG 119
| |||||||| | | | ||||||||||| | ||||||||| |||||||||||| ||
Sbjct 192 GT-GTGATAGTGGGTTCGAAGTACTGCTCACCAAACCCTGTAGGTTTGGCGATCGTCCGT 250
Query 120 AAGATAATGAAGATAACGGACGGTAACTTCGTGATAAAGAATGGGGAAGGAAACTTGTTG 179
||| | ||||||||||||||||||||||||||||||| || || ||| || || || |||
Sbjct 251 AAGGTGATGAAGATAACGGACGGTAACTTCGTGATAACGAGTGCGGACGGTAAGTTATTG 310
Query 180 TTCAAGGTGAATGATCCTTTCTTTAGTATTCACGAG-AAGAGGATCTTGGTGGATGGTTA 238
||||||||||| |||||||| |||||| |||||| | |||||||||||| ||||| |||
Sbjct 311 TTCAAGGTGAAGGATCCTTTGTTTAGTCTTCACG-GCAAGAGGATCTTGCTGGATTGTTC 369
Query 239 TGGAACTAAGGTCTTGACTTTGAAAGGGAAGATAATGACCATGCATGACAGGTGGCGAGT 298
|||| |||||||||| ||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 370 TGGAGCTAAGGTCTTAACTTTGAGAGGGAAGATGATGACCATGCATGACAGGTGGCAAGT 429
Query 299 GTTTAGAGGAGGGAGTACGGAGGAGAGTGATCTGCTATACACGGTGAAAAGATCAAAC-A 357
||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| | |
Sbjct 430 GTTTAGAGGAGGGAGTACGGAGGAGGGTGCTCTACTATACACGGTGAAAAGATCGT-CGA 488
Query 358 TGATTCAGCTAACCACC-AAACTTGATGTGTTTTTGGCTGACAACATAGAGGAGAAGAAA 416
||||||||||| || || |||||||| |||||||||||| ||||| |||||||||||| |
Sbjct 489 TGATTCAGCTAGCC-CCTAAACTTGAGGTGTTTTTGGCTAACAACGTAGAGGAGAAGATA 547
Query 417 TGTGATTACAGAGTCGAAGGTGTTTGGCTCGA-GAGTTCTTGTTTTGTCTACGCCGGCGA 475
||||||| || |||| |||| | |||||||| || | ||||| ||||||||||||||||
Sbjct 548 TGTGATTTCAAAGTCAAAGGGGCCTGGCTCGACGACT-CTTGTGTTGTCTACGCCGGCGA 606
Query 476 TTCTGACATCATTGTTGCCCAAATGCGCGAGAA-GAAAACGATGCAGAG-CGTTTTCTTG 533
|||||||| |||| ||||||| ||| ||| ||| | ||||||||| ||| | |||||||
Sbjct 607 TTCTGACACCATTATTGCCCACATGTGCG-GAAAGCAAACGATGC-GAGGCTTTTTCTTC 664
Query 534 GGAAAGGATCATTTCTGCGTCACTGTTAATCCA-AATGTTGATTATGCCTTCATTGCCTC 592
|||||||| ||||||| |||||||||| || | || |||||||||||||||||||| ||
Sbjct 665 GGAAAGGACCATTTCTCCGTCACTGTTGATA-AGAACGTTGATTATGCCTTCATTGCATC 723
Query 593 TCTCATTGTTATCCTT 608
||||||||| ||||||
Sbjct 724 TCTCATTGTCATCCTT 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29286507701
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5