BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473542
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33880.1 | Symbols: | Avirulence induced gene (AIG1) family... 837 0.0
> AT1G33880.1 | Symbols: | Avirulence induced gene (AIG1) family
protein | chr1:12303862-12304911 REVERSE LENGTH=705
Length=705
Score = 837 bits (453), Expect = 0.0
Identities = 586/649 (90%), Gaps = 14/649 (2%)
Strand=Plus/Plus
Query 47 CTGGTGATCAGAACATGGGAACGTCCGTGCCTAAGCCGGTTAAAAACATAGTTCTAGTAG 106
||| |||| |||| | || ||||| ||| ||||||||||||||||||| |||||||| |
Sbjct 29 CTGATGATAAGAAAAAAGGTACGTCAGTGTCTAAGCCGGTTAAAAACATTGTTCTAGTGG 88
Query 107 GGCGTTCTATCAATGGAATATGCACCACTGGGAACACCATCCTCGGTCaaaaaaaGTTCA 166
|||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 89 GGCGTTCTGTCAATGGAATATGCACCACTGGGAACAATATCCTCGGTCAAAACAAGTTCG 148
Query 167 CCTCCGAAGGTGCTTTCATGCACTCTCAGATGTATAGTACCACGACACCAGATGGTCAAA 226
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 149 GCTCCGAAGGTGCTTTCATGCACTGTCAGATGTATAGTACCACGACACCAGATGGTCAAA 208
Query 227 TGATCAATGTGATTAAAACTCCTGGTATGTTCGATTTGTCTGTGTCCGAAGACTTCATAA 286
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 209 TGATCAATGTAATTAAAACTCCTGGTATGTTCGATTTGTCTGTGTCCGAAGACTACATAA 268
Query 287 GTAAAGAAATAATCAATTGCTTAACTTTGGTGGAAGAAGGCATAG-ATGCTGTGTTGTTT 345
|||||||||||||||||||||||||||| | ||||||||| | | ||||||||||||||
Sbjct 269 GTAAAGAAATAATCAATTGCTTAACTTTAGCAGAAGAAGGCGT-GCATGCTGTGTTGTTT 327
Query 346 GTTCTATCTGT-AAGGAATCGAATCTCACAAGAGGAAGAGTATGCACTTAATACCCTGCA 404
||||||||| | || |||||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct 328 GTTCTATCTATGAA-GAATCGGATCACACAAGAGGAAGAGTATGCACTTAATACCCTACA 386
Query 405 GCGCATATTTGGGAGTAAAATCTTTGAATATATGAT-TTTATTGCTCACTAACGGGGAAA 463
|| |||||||||||||||||| |||||||| |||| ||| ||||||| | |||||||||
Sbjct 387 ACGTATATTTGGGAGTAAAATCCTTGAATATTTGATATTT-TTGCTCATTGACGGGGAAA 445
Query 464 AGTTCGAGGCGTTCGAGTTTGAAGATTATTTTCGGGAATGTTGTCCTGAATTTCTTATGA 523
|||| |||||| ||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 446 AGTTTGAGGCGAAGGAGTTCGAAGATTATTTTCCCGAATGTTGTCCTGAATTTCTTATGA 505
Query 524 AAGTTCTCAGATTCTGCAATGGCCGAAAGGTCTTGTTTAATAACATGACTAATGATGAAG 583
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GAGTTCTCAGGTTCTGCAATGGCCGAAAGGTCTTGTTTAATAACATGACTAATGATGAAG 565
Query 584 GCGTGAAGGCTGAACAAGTCAATCAGATTATGGCCCATGTCGCAGCAATTAGTAAGAAAA 643
|||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||
Sbjct 566 GCGTCAAGGCTGAACAAGTCAATCAGGTTATGGCCCATGTTGCAGCAATTAGCAAGAAAA 625
Query 644 -T-A--AAT--CCGTATACT-AACGATATGTATCGTCATATAAAGGTAA 685
| | || || |||||| || |||||||||||| ||||||||||||
Sbjct 626 ATGATGAAAAACCATATACTGAA-GATATGTATCGTAATATAAAGGTAA 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5