BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473550
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33970.1 | Symbols: | P-loop containing nucleoside triphosp... 1554 0.0
> AT1G33970.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:12349463-12351203
REVERSE LENGTH=1252
Length=1252
Score = 1554 bits (841), Expect = 0.0
Identities = 1001/1079 (93%), Gaps = 8/1079 (1%)
Strand=Plus/Plus
Query 38 ATAAGGGTATATGAGTTTGTTGAAGATGGGTGGCGATATGATGGAAGATGATTGGGAATT 97
|||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct 63 ATAAGGGTATATGAGTTTGTTGGACATGGGTGGAGATATGATGGAAGATGATTGGGAATT 122
Query 98 TGCTTCATCGTCAAACCCTAAACGAACCCTAGTTCTTGTGGGCCGTACTGGTAACGGAAA 157
||| ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 123 TGCGTCATCATCAAACCCTAAAAGAACCCTAGTTCTTGTGGGCCGTACTGGAAACGGAAA 182
Query 158 GAGTGCGACAGGGAACAGTATCCTTGGGAGGAAAGCTTTTAGGTCAAGAGCTAGAACTGT 217
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GAGTGCGACAGGTAACAGTATCCTTGGGAGGAAAGCTTTTAGGTCAAGAGCTAGAACTGT 242
Query 218 AGGAGTGACGAGCACGTGCGAGTCACAGAGAGTTGTTCAAGAAGATGGTGATATCATTAA 277
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 AGGAGTGACAAGCACGTGCGAGTCACAGAGAGTTGTTCAAGAAGATGGTGATATCATTAA 302
Query 278 TGTGGTTGATACTCCTGGTTTGTTTGATTTGTCCACTGCAGCCGATTTTATCGGTAAAGA 337
||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 303 TGTTGTTGATACTCCTGGTTTGTTTGATTTGTCTACTGCAGCTGATTTTATTGGTAAAGA 362
Query 338 AATTGTGAGGTGTATAAGTTTGGCAGAAGATGGGATTCATGCGATCTTGTTGGTATTCTC 397
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GATTGTGAGGTGTATAAGTTTGGCAGAAGATGGGATTCATGCGATCTTGTTGGTATTCTC 422
Query 398 TGTGAGGCGGCTTGCTGAAGAGGAGCAAACTATTCTTAGTTTCTTGCAAGCACTATTCGG 457
||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 423 TGTGAGGCGGCTTGCTGAAGAGGAGCAAACTGTGCTTAGTTTCTTGCAAGCGCTATTCGG 482
Query 458 CAGTAAAATCGCTGATTATATGATCGTTGTTTTTACCGGTGGGGATGAGTTGGAAGAGAA 517
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 483 CAGTAAGATCGCTGACTATATGATCGTTGTTTTTACCGGTGGCGATGAGTTGGAAGAGAA 542
Query 518 TGAGGAGACATTGGAGGAGTATTTGGCTGACTTTTGCCCTGAGTTTCTGAAAGAAATTCT 577
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 543 TGAGGAGACATTGGAGGAGTATTTGGCTGACTATTGCCCTGAGTTTCTTAAAGAAATTCT 602
Query 578 TGGGATATGTGACAATCGGGTGGTCTTGTTTAATAACAAGACTACTGATAAGGTGAAGAA 637
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 603 TGGGATATGTGACAATCGGTTGGTGTTGTTTAATAACAAGACTACTGATAAGGTGAAGAA 662
Query 638 AGCTGAGCAAGTTCAGAAGCTTCTCTTGCTTGTTGAATCCATTGTCAAAC-GAAACAACG 696
|||||||||||||||||||||||||| ||||||||||| |||| |||| ||| ||| |
Sbjct 663 AGCTGAGCAAGTTCAGAAGCTTCTCTCACTTGTTGAATCTGTTGTTAAACAGAA-CAATG 721
Query 697 GAAAACCGTATACAGATGAGTTGTTCCATGAGCTACAGGAAGAGGCTATTAAGCTAAGGG 756
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 722 GAAAACCGTATTCAGATGAGTTGTTCCATGAGCTACAGGAAGAGGCTATCAAGCTAAGGG 781
Query 757 GCCAGAAAAAGGAGGTTGAAGCG-CTGAAGGGTTACTCAAATATTGAGATATCTGAGTTC 815
|||||||||||||||||| | || |||||||||| |||| ||||||| |||||||
Sbjct 782 ACCAGAAAAAGGAGGTTGA-GTTACTTCAGGGTTACTCTAATAATGAGATAGATGAGTTC 840
Query 816 AAGAAGCAGATTGATATGTCCTATGACCGGCAACTTAGCCGCATCACAGAGATGGTTGAG 875
|||||||| || |||||||||||||| |||| |||||||||||||| |||||||| |||
Sbjct 841 AAGAAGCAAATCGATATGTCCTATGATAGGCAGCTTAGCCGCATCACCGAGATGGTGGAG 900
Query 876 ACTAAGCTGAGAGAAACAGCCAAGAGGCTGGAGCAGCAACTGGGTGAAGAGCAAGCCGCA 935
|||||||||||||| || || ||||| || ||||||||||| |||||||||||||| |||
Sbjct 901 ACTAAGCTGAGAGACACTGCTAAGAGACTAGAGCAGCAACTAGGTGAAGAGCAAGCTGCA 960
Query 936 AGAATTGAAGCGGAAAAGAAGGTAAACGAAGTTCAGAAACGGTCGAGCGATGAGATTAAG 995
||| |||||||||| |||| || ||||||||||||||| |||||||||||||||||||||
Sbjct 961 AGACTTGAAGCGGAGAAGAGGGCAAACGAAGTTCAGAAGCGGTCGAGCGATGAGATTAAG 1020
Query 996 AAGCTCAGGGAGAATCTGGAGAGGGCTGAAAAAGAGACAAAGGAGCTCCAGAAAAAACTG 1055
|||||||| ||||||||||||||||| ||||||||||| ||||| || ||||||||||||
Sbjct 1021 AAGCTCAGAGAGAATCTGGAGAGGGCGGAAAAAGAGACGAAGGAACTTCAGAAAAAACTG 1080
Query 1056 GGAAAGTGCATCAATCTGTGAT--GCTGAGAC-T-GAAGCTTCAGTGAAATCTGATAAG 1110
||||||||||||||||| |||| | ||||| | | |||| |||||||||||||||||
Sbjct 1081 GGAAAGTGCATCAATCTATGATATGTTGAGATGTTGTAGCTCCAGTGAAATCTGATAAG 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58182431655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5